{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,31]],"date-time":"2026-03-31T18:35:04Z","timestamp":1774982104132,"version":"3.50.1"},"reference-count":22,"publisher":"Oxford University Press (OUP)","issue":"W1","license":[{"start":{"date-parts":[[2016,11,10]],"date-time":"2016-11-10T00:00:00Z","timestamp":1478736000000},"content-version":"vor","delay-in-days":899,"URL":"https:\/\/2.zoppoz.workers.dev:443\/http\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,7,1]]},"DOI":"10.1093\/nar\/gku377","type":"journal-article","created":{"date-parts":[[2014,5,27]],"date-time":"2014-05-27T02:37:57Z","timestamp":1401158277000},"page":"W478-W484","source":"Crossref","is-referenced-by-count":161,"title":["Enhancing UCSF Chimera through web services"],"prefix":"10.1093","volume":"42","author":[{"given":"Conrad C.","family":"Huang","sequence":"first","affiliation":[]},{"given":"Elaine C.","family":"Meng","sequence":"additional","affiliation":[]},{"given":"John H.","family":"Morris","sequence":"additional","affiliation":[]},{"given":"Eric F.","family":"Pettersen","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/2.zoppoz.workers.dev:443\/https\/orcid.org\/0000-0001-6227-0637","authenticated-orcid":false,"given":"Thomas E.","family":"Ferrin","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2014,5,26]]},"reference":[{"key":"key\n\t\t\t\t20171012003110_B1","doi-asserted-by":"crossref","first-page":"473","DOI":"10.1016\/j.str.2005.01.006","article-title":"Software extensions to UCSF chimera for interactive visualization of large molecular assemblies","volume":"13","author":"Goddard","year":"2005","journal-title":"Structure"},{"key":"key\n\t\t\t\t20171012003110_B2","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1186\/1471-2105-7-339","article-title":"Tools for integrated sequence-structure analysis with UCSF Chimera","volume":"7","author":"Meng","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"key\n\t\t\t\t20171012003110_B3","doi-asserted-by":"crossref","first-page":"1605","DOI":"10.1002\/jcc.20084","article-title":"UCSF Chimera\u2014a visualization system for exploratory research and analysis","volume":"25","author":"Pettersen","year":"2004","journal-title":"J. Comput. Chem."},{"key":"key\n\t\t\t\t20171012003110_B4","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B5","doi-asserted-by":"crossref","first-page":"D114","DOI":"10.1093\/nar\/gkt980","article-title":"The Nucleic Acid Database: new features and capabilities","volume":"42","author":"Coimbatore Narayanan","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B6","doi-asserted-by":"crossref","first-page":"D456","DOI":"10.1093\/nar\/gkq880","article-title":"EMDataBank.org: unified data resource for CryoEM","volume":"39","author":"Lawson","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B7","doi-asserted-by":"crossref","first-page":"W724","DOI":"10.1093\/nar\/gkq503","article-title":"Opal web services for biomedical applications","volume":"38","author":"Ren","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B8","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/msb.2011.75","article-title":"Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega","volume":"7","author":"Sievers","year":"2011","journal-title":"Mol. Syst. Biol."},{"key":"key\n\t\t\t\t20171012003110_B9","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B10","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171012003110_B11","doi-asserted-by":"crossref","DOI":"10.1002\/0471140864.ps0209s50","article-title":"Comparative protein structure modeling using MODELLER","author":"Eswar","year":"2007","journal-title":"Curr. Protoc. Protein Sci."},{"key":"key\n\t\t\t\t20171012003110_B12","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1016\/j.jsb.2011.09.006","article-title":"UCSF Chimera, MODELLER, and IMP: an integrated modeling system","volume":"179","author":"Yang","year":"2012","journal-title":"J. Struct. Biol."},{"key":"key\n\t\t\t\t20171012003110_B13","doi-asserted-by":"crossref","first-page":"W540","DOI":"10.1093\/nar\/gkq461","article-title":"FoXS: a web server for rapid computation and fitting of SAXS profiles","volume":"38","author":"Schneidman-Duhovny","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B14","doi-asserted-by":"crossref","first-page":"1488","DOI":"10.1002\/jcc.21720","article-title":"Web servers and services for electrostatics calculations with APBS and PDB2PQR","volume":"32","author":"Unni","year":"2011","journal-title":"J. Comput. Chem."},{"key":"key\n\t\t\t\t20171012003110_B15","doi-asserted-by":"crossref","first-page":"W522","DOI":"10.1093\/nar\/gkm276","article-title":"PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations","volume":"35","author":"Dolinsky","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B16","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1002\/jcc.21334","article-title":"AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading","volume":"31","author":"Trott","year":"2010","journal-title":"J. Comput. Chem."},{"key":"key\n\t\t\t\t20171012003110_B17","doi-asserted-by":"crossref","first-page":"D191","DOI":"10.1093\/nar\/gkt1140","article-title":"Activities at the Universal Protein Resource (UniProt)","volume":"42","author":"UniProt","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"key\n\t\t\t\t20171012003110_B18","doi-asserted-by":"crossref","first-page":"9950","DOI":"10.1021\/bi201312u","article-title":"The Enzyme Function Initiative","volume":"50","author":"Gerlt","year":"2011","journal-title":"Biochemistry"},{"key":"key\n\t\t\t\t20171012003110_B19","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1208\/ps010202","article-title":"The Venus flytrap of periplasmic binding proteins: an ancient protein module present in multiple drug receptors","volume":"1","author":"Felder","year":"1999","journal-title":"AAPS PharmSci."},{"key":"key\n\t\t\t\t20171012003110_B20","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1016\/j.jmb.2009.07.043","article-title":"Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate","volume":"392","author":"Akiyama","year":"2009","journal-title":"J. Mol. Biol."},{"key":"key\n\t\t\t\t20171012003110_B21","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1186\/1472-6807-7-11","article-title":"Crystal structures of an Extracytoplasmic Solute Receptor from a TRAP transporter in its open and closed forms reveal a helix-swapped dimer requiring a cation for alpha-keto acid binding","volume":"7","author":"Gonin","year":"2007","journal-title":"BMC Struct. Biol."},{"key":"key\n\t\t\t\t20171012003110_B22","doi-asserted-by":"crossref","first-page":"9475","DOI":"10.1021\/bi8006719","article-title":"1.55 A structure of the ectoine binding protein TeaA of the osmoregulated TRAP-transporter TeaABC from Halomonas elongata","volume":"47","author":"Kuhlmann","year":"2008","journal-title":"Biochemistry"}],"container-title":["Nucleic Acids Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/2.zoppoz.workers.dev:443\/http\/academic.oup.com\/nar\/article-pdf\/42\/W1\/W478\/17423041\/gku377.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,27]],"date-time":"2024-05-27T00:56:57Z","timestamp":1716771417000},"score":1,"resource":{"primary":{"URL":"https:\/\/2.zoppoz.workers.dev:443\/http\/academic.oup.com\/nar\/article\/42\/W1\/W478\/2436413\/Enhancing-UCSF-Chimera-through-web-services"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,5,26]]},"references-count":22,"journal-issue":{"issue":"W1","published-online":{"date-parts":[[2014,5,26]]},"published-print":{"date-parts":[[2014,7,1]]}},"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/doi.org\/10.1093\/nar\/gku377","relation":{},"ISSN":["1362-4962","0305-1048"],"issn-type":[{"value":"1362-4962","type":"electronic"},{"value":"0305-1048","type":"print"}],"subject":[],"published-other":{"date-parts":[[2014,7,1]]},"published":{"date-parts":[[2014,5,26]]}}}