{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T19:07:48Z","timestamp":1772910468165,"version":"3.50.1"},"reference-count":57,"publisher":"Institute of Electrical and Electronics Engineers (IEEE)","issue":"3","license":[{"start":{"date-parts":[[2019,5,1]],"date-time":"2019-05-01T00:00:00Z","timestamp":1556668800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/ieeexplore.ieee.org\/Xplorehelp\/downloads\/license-information\/IEEE.html"},{"start":{"date-parts":[[2019,5,1]],"date-time":"2019-05-01T00:00:00Z","timestamp":1556668800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2019,5,1]],"date-time":"2019-05-01T00:00:00Z","timestamp":1556668800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/doi.org\/10.15223\/policy-037"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61402190"],"award-info":[{"award-number":["61402190"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61532008"],"award-info":[{"award-number":["61532008"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["61602309"],"award-info":[{"award-number":["61602309"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["IEEE\/ACM Trans. Comput. Biol. and Bioinf."],"published-print":{"date-parts":[[2019,5,1]]},"DOI":"10.1109\/tcbb.2018.2834529","type":"journal-article","created":{"date-parts":[[2018,5,9]],"date-time":"2018-05-09T18:50:24Z","timestamp":1525891824000},"page":"1042-1048","source":"Crossref","is-referenced-by-count":8,"title":["Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data"],"prefix":"10.1109","volume":"16","author":[{"ORCID":"https:\/\/2.zoppoz.workers.dev:443\/https\/orcid.org\/0000-0002-7912-6030","authenticated-orcid":false,"given":"Jia-Juan","family":"Tu","sequence":"first","affiliation":[{"name":"Central China Normal University, Wuhan, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/2.zoppoz.workers.dev:443\/https\/orcid.org\/0000-0003-4007-4568","authenticated-orcid":false,"given":"Le","family":"Ou-Yang","sequence":"additional","affiliation":[{"name":"Shenzhen University, Shenzhen, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaohua","family":"Hu","sequence":"additional","affiliation":[{"name":"Central China Normal University, Wuhan, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/2.zoppoz.workers.dev:443\/https\/orcid.org\/0000-0002-5052-9725","authenticated-orcid":false,"given":"Xiao-Fei","family":"Zhang","sequence":"additional","affiliation":[{"name":"Central China Normal University, Wuhan, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"263","reference":[{"key":"ref39","first-page":"1432","article-title":"Stability approach to regularization selection (StARS) for high dimensional graphical models","author":"liu","year":"2010","journal-title":"Proc Int Conf Neural Inf Process"},{"key":"ref38","doi-asserted-by":"publisher","DOI":"10.1561\/2400000003"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12918-016-0255-6","article-title":"Integrating mutation and gene expression cross-sectional data to infer cancer progression","volume":"10","author":"fleck","year":"2016","journal-title":"BMC Syst Biol"},{"key":"ref32","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms6901"},{"key":"ref31","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2764"},{"key":"ref30","doi-asserted-by":"publisher","DOI":"10.1214\/09-AOS691"},{"key":"ref37","article-title":"One-step sparse estimates in nonconcave penalized likelihood models","volume":"36","author":"zou","year":"2008","journal-title":"Ann Statist"},{"key":"ref36","article-title":"A note on the group lasso and a sparse group lasso","author":"friedman","year":"2010"},{"key":"ref35","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asq060"},{"key":"ref34","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asp020"},{"key":"ref28","first-page":"2281","article-title":"Generalized direct change estimation in Ising model structure","author":"fazayeli","year":"2016","journal-title":"Proc Int Conf Mach Learn"},{"key":"ref27","doi-asserted-by":"publisher","DOI":"10.1162\/NECO_a_00589"},{"key":"ref29","doi-asserted-by":"publisher","DOI":"10.1214\/16-AOS1470"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1038\/nature08454"},{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1038\/nrg2918"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asu009"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asx049"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw581"},{"key":"ref24","doi-asserted-by":"publisher","DOI":"10.1039\/C6MB00619A"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.1016\/j.compbiolchem.2017.03.010"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-40991-2_38"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btx208"},{"key":"ref50","doi-asserted-by":"publisher","DOI":"10.1038\/nrc2761"},{"key":"ref51","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.200900537"},{"key":"ref57","doi-asserted-by":"publisher","DOI":"10.1214\/16-AOAS998"},{"key":"ref56","doi-asserted-by":"publisher","DOI":"10.1080\/10618600.2016.1237362"},{"key":"ref55","doi-asserted-by":"publisher","DOI":"10.1111\/rssb.12168"},{"key":"ref54","doi-asserted-by":"publisher","DOI":"10.1080\/10618600.2014.900500"},{"key":"ref53","doi-asserted-by":"publisher","DOI":"10.3727\/096504009789954672"},{"key":"ref52","doi-asserted-by":"publisher","DOI":"10.1016\/j.trsl.2006.06.001"},{"key":"ref10","author":"anzai","year":"2012","journal-title":"Pattern Recognition and Machine Learning"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1561\/2200000001","article-title":"Graphical models, exponential families, and variational inference","volume":"1","author":"wainwright","year":"2008","journal-title":"Foundations & Trends in Mach Learn"},{"key":"ref40","doi-asserted-by":"publisher","DOI":"10.1038\/nrc4019"},{"key":"ref12","doi-asserted-by":"publisher","DOI":"10.1093\/biomet\/asm018"},{"key":"ref13","doi-asserted-by":"publisher","DOI":"10.1093\/biostatistics\/kxm045"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1214\/08-EJS176"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1111\/rssb.12033"},{"key":"ref16","first-page":"445","article-title":"Node-based learning of multiple gaussian graphical models","volume":"15","author":"mohan","year":"2014","journal-title":"J Mach Learn Res"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1004888"},{"key":"ref18","doi-asserted-by":"publisher","DOI":"10.1038\/srep34112"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1016\/j.ymeth.2017.05.014"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv406"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-15-335"},{"key":"ref6","article-title":"DiffGraph: An R package for identifying gene network rewiring using differential graphical models","author":"zhang","year":"2017","journal-title":"Bioinf"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1016\/j.tig.2010.05.001"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1126\/science.1094068"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-8-S6-S5"},{"key":"ref49","doi-asserted-by":"publisher","DOI":"10.1097\/PAS.0000000000000553"},{"key":"ref9","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198522195.001.0001","author":"lauritzen","year":"1996","journal-title":"Graphical Models"},{"key":"ref46","doi-asserted-by":"publisher","DOI":"10.18632\/oncotarget.6935"},{"key":"ref45","doi-asserted-by":"publisher","DOI":"10.1038\/nm.2658"},{"key":"ref48","doi-asserted-by":"publisher","DOI":"10.1007\/s13277-015-4282-5"},{"key":"ref47","article-title":"Prognostic value of SATB2 expression in patients with esophageal squamous cell carcinoma","volume":"8","author":"geng","year":"2015","journal-title":"Int J Clin Exp Pathol"},{"key":"ref42","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv677"},{"key":"ref41","article-title":"Integrated genomic analyses of ovarian carcinoma","volume":"474","author":"network","year":"2011","journal-title":"Nature"},{"key":"ref44","doi-asserted-by":"publisher","DOI":"10.1186\/s12859-015-0591-3"},{"key":"ref43","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btv634"}],"container-title":["IEEE\/ACM Transactions on Computational Biology and Bioinformatics"],"original-title":[],"link":[{"URL":"https:\/\/2.zoppoz.workers.dev:443\/http\/xplorestaging.ieee.org\/ielx7\/8857\/8730459\/08356577.pdf?arnumber=8356577","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,6]],"date-time":"2024-07-06T17:07:55Z","timestamp":1720285675000},"score":1,"resource":{"primary":{"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/ieeexplore.ieee.org\/document\/8356577\/"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,5,1]]},"references-count":57,"journal-issue":{"issue":"3"},"URL":"https:\/\/2.zoppoz.workers.dev:443\/https\/doi.org\/10.1109\/tcbb.2018.2834529","relation":{},"ISSN":["1545-5963","1557-9964","2374-0043"],"issn-type":[{"value":"1545-5963","type":"print"},{"value":"1557-9964","type":"electronic"},{"value":"2374-0043","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,5,1]]}}}