{"id":"https://openalex.org/W2066507577","doi":"https://doi.org/10.1002/jcc.21968","title":"SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles","display_name":"SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles","publication_year":2011,"publication_date":"2011-11-02","ids":{"openalex":"https://openalex.org/W2066507577","doi":"https://doi.org/10.1002/jcc.21968","mag":"2066507577","pmid":"https://pubmed.ncbi.nlm.nih.gov/22045506"},"language":"en","primary_location":{"id":"doi:10.1002/jcc.21968","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.21968","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.21968","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.21968","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069081626","display_name":"Eshel Faraggi","orcid":"https://orcid.org/0000-0001-5629-4800"},"institutions":[{"id":"https://openalex.org/I4210164117","display_name":"Walker (United States)","ror":"https://ror.org/05hgh7849","country_code":"US","type":"company","lineage":["https://openalex.org/I4210164117"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eshel Faraggi","raw_affiliation_strings":["School of Informatics, Indiana University Purdue University, Indianapolis, Indiana, USA","Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","School of Informatics, Indiana University Purdue University, Indianapolis, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Indiana University Purdue University, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics, Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100665426","display_name":"Tuo Zhang","orcid":"https://orcid.org/0000-0003-3256-5930"},"institutions":[{"id":"https://openalex.org/I4210164117","display_name":"Walker (United States)","ror":"https://ror.org/05hgh7849","country_code":"US","type":"company","lineage":["https://openalex.org/I4210164117"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tuo Zhang","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","School of Informatics, Indiana University Purdue University, Indianapolis, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics, Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I4210164117","display_name":"Walker (United States)","ror":"https://ror.org/05hgh7849","country_code":"US","type":"company","lineage":["https://openalex.org/I4210164117"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","School of Informatics, Indiana University Purdue University, Indianapolis, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics, Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I4210164117","display_name":"Walker (United States)","ror":"https://ror.org/05hgh7849","country_code":"US","type":"company","lineage":["https://openalex.org/I4210164117"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Alberta, Edmonton, Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032724151","display_name":"Yaoqi Zhou","orcid":"https://orcid.org/0000-0002-9958-5699"},"institutions":[{"id":"https://openalex.org/I4210164117","display_name":"Walker (United States)","ror":"https://ror.org/05hgh7849","country_code":"US","type":"company","lineage":["https://openalex.org/I4210164117"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yaoqi Zhou","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","School of Informatics, Indiana University Purdue University, Indianapolis, Indiana"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, 719 Indiana Ave Ste 319, Walker Plaza Building, Indianapolis, Indiana 46202","institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics, Indiana University Purdue University, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032724151"],"corresponding_institution_ids":["https://openalex.org/I4210164117","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":6.199,"has_fulltext":true,"cited_by_count":254,"citation_normalized_percentile":{"value":0.97511639,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"33","issue":"3","first_page":"259","last_page":"267"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/casp","display_name":"CASP","score":0.8624299764633179},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.7371651530265808},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.649008572101593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5124254822731018},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47555774450302124},{"id":"https://openalex.org/keywords/torsion","display_name":"Torsion (gastropod)","score":0.4637053608894348},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4602135717868805},{"id":"https://openalex.org/keywords/ab-initio","display_name":"Ab initio","score":0.4434855580329895},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4359338879585266},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.41154617071151733},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.320483922958374},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2959740161895752},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23263856768608093},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.12948817014694214},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12188342213630676}],"concepts":[{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.8624299764633179},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.7371651530265808},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.649008572101593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5124254822731018},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47555774450302124},{"id":"https://openalex.org/C77461463","wikidata":"https://www.wikidata.org/wiki/Q7827201","display_name":"Torsion (gastropod)","level":2,"score":0.4637053608894348},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4602135717868805},{"id":"https://openalex.org/C2781442258","wikidata":"https://www.wikidata.org/wiki/Q46310","display_name":"Ab initio","level":2,"score":0.4434855580329895},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4359338879585266},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.41154617071151733},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.320483922958374},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2959740161895752},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23263856768608093},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.12948817014694214},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12188342213630676},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1002/jcc.21968","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.21968","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.21968","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},{"id":"pmid:22045506","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22045506","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational chemistry","raw_type":null},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/49706","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/49706","pdf_url":"https://scholarworks.indianapolis.iu.edu/bitstreams/49ea6823-ad89-4742-8cd9-76138d13d4f7/download","source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2555074","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3240697","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:d8de35c","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/90013","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/90013","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1002/jcc.21968","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.21968","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.21968","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1476557043","display_name":null,"funder_award_id":"GM067168","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1938510025","display_name":null,"funder_award_id":"R01 GM085003","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2856827823","display_name":null,"funder_award_id":"R01 GM 067168","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G625523221","display_name":null,"funder_award_id":"GM 085003","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2066507577.pdf","grobid_xml":"https://content.openalex.org/works/W2066507577.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W198082522","https://openalex.org/W1605300833","https://openalex.org/W1606410455","https://openalex.org/W1976005460","https://openalex.org/W1981132436","https://openalex.org/W1981387027","https://openalex.org/W1985204165","https://openalex.org/W1987171646","https://openalex.org/W2008708467","https://openalex.org/W2013734705","https://openalex.org/W2014110528","https://openalex.org/W2019949712","https://openalex.org/W2024035237","https://openalex.org/W2046192291","https://openalex.org/W2057289558","https://openalex.org/W2060178110","https://openalex.org/W2064281058","https://openalex.org/W2068976016","https://openalex.org/W2084281591","https://openalex.org/W2091518964","https://openalex.org/W2092920038","https://openalex.org/W2098464924","https://openalex.org/W2100697211","https://openalex.org/W2101802117","https://openalex.org/W2122468718","https://openalex.org/W2124462621","https://openalex.org/W2127261350","https://openalex.org/W2129312340","https://openalex.org/W2130161623","https://openalex.org/W2130479394","https://openalex.org/W2135079066","https://openalex.org/W2141915739","https://openalex.org/W2141920771","https://openalex.org/W2146084306","https://openalex.org/W2147209844","https://openalex.org/W2147905080","https://openalex.org/W2148557779","https://openalex.org/W2151960293","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2158714788","https://openalex.org/W2159862550","https://openalex.org/W2159940018","https://openalex.org/W2162040082","https://openalex.org/W2201713963"],"related_works":["https://openalex.org/W2928838901","https://openalex.org/W2946599741","https://openalex.org/W2147472674","https://openalex.org/W2561391236","https://openalex.org/W1888349473","https://openalex.org/W2136856901","https://openalex.org/W3165545667","https://openalex.org/W4225106352","https://openalex.org/W47248631","https://openalex.org/W3171039768"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,25,52,54,138,150,220,227,233],"of":[2,20,55,76,89,118,126,136,143,160,195,202],"protein":[3,120],"secondary":[4,23,50,176],"structure":[5,13,24,51,137,177],"is":[6,108,152,169,189],"essential":[7],"for":[8,85,157,200],"accurate":[9,219,232],"sequence":[10,80],"alignment,":[11],"three-dimensional":[12],"modeling,":[14],"and":[15,58,91,129,146,185,197,238,247],"function":[16],"prediction.":[17],"The":[18,149],"accuracy":[19,95,104,142,151],"ab":[21],"initio":[22],"from":[26,32],"sequence,":[27],"however,":[28],"has":[29],"only":[30],"increased":[31],"around":[33],"77":[34],"to":[35,73,155,181,206],"80%":[36],"over":[37,226,239],"the":[38,86,158,164,182],"past":[39],"decade.":[40],"Here,":[41],"we":[42],"developed":[43],"a":[44,74,93,122,172],"multistep":[45],"neural-network":[46],"algorithm":[47],"by":[48,105,111,171,208,242],"coupling":[49],"with":[53,140],"solvent":[56],"accessibility":[57],"backbone":[59],"torsion":[60],"angles":[61],"in":[62,221,234],"an":[63,113,141],"iterative":[64],"manner.":[65],"Our":[66],"method":[67],"called":[68],"SPINE":[69,90,106,191,214,244],"X":[70,107,192,215,245],"was":[71],"applied":[72],"dataset":[75,117,125,159],"2640":[77,161],"proteins":[78,128,162],"(25%":[79],"identity":[81],"cutoff)":[82],"previously":[83],"built":[84,115,124],"first":[87],"version":[88],"achieved":[92],"82.0%":[94],"based":[96],"on":[97],"10-fold":[98],"cross":[99],"validation":[100],"(Q(3)).":[101],"Surpassing":[102],"81%":[103],"further":[109,153,211],"confirmed":[110],"employing":[112],"independently":[114],"test":[116],"1833":[119,203],"chains,":[121],"recently":[123],"1975":[127],"117":[130],"CASP":[131],"9":[132],"targets":[133],"(critical":[134],"assessment":[135],"techniques)":[139],"81.3%,":[144],"82.3%":[145],"81.8%,":[147],"respectively.":[148],"improved":[154],"83.8%":[156],"if":[163],"DSSP":[165],"assignment":[166,178],"used":[167],"above":[168],"replaced":[170],"more":[173,218,231],"consistent":[174],"consensus":[175],"method.":[179],"Comparison":[180],"popular":[183],"PSIPRED":[184,229],"CASP-winning":[186],"structure-prediction":[187],"techniques":[188],"made.":[190],"predicts":[193,240],"number":[194],"helices":[196],"sheets":[198],"correctly":[199],"21.0%":[201],"proteins,":[204],"compared":[205],"17.6%":[207],"PSIPRED.":[209],"It":[210],"shows":[212],"that":[213],"consistently":[216],"makes":[217,230],"helical":[222],"residues":[223,236],"(6%)":[224],"without":[225],"while":[228],"coil":[235],"(3-5%)":[237],"them":[241],"7%.":[243],"Server":[246],"its":[248],"training/test":[249],"datasets":[250],"are":[251],"available":[252],"at":[253],"http://sparks.informatics.iupui.edu/":[254]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":24},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":36},{"year":2015,"cited_by_count":28},{"year":2014,"cited_by_count":32},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
