{"id":"https://openalex.org/W3017657949","doi":"https://doi.org/10.1021/acs.jcim.9b01207","title":"SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network","display_name":"SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network","publication_year":2020,"publication_date":"2020-04-27","ids":{"openalex":"https://openalex.org/W3017657949","doi":"https://doi.org/10.1021/acs.jcim.9b01207","mag":"3017657949","pmid":"https://pubmed.ncbi.nlm.nih.gov/32338512"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.9b01207","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01207","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090158129","display_name":"Mingcai Chen","orcid":"https://orcid.org/0000-0001-7822-4651"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming-Cai Chen","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100645670","display_name":"Yang Li","orcid":"https://orcid.org/0000-0003-2480-1972"},"institutions":[{"id":"https://openalex.org/I199037182","display_name":"Washtenaw Community College","ror":"https://ror.org/03k77wm53","country_code":"US","type":"education","lineage":["https://openalex.org/I199037182"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Washtenaw 100, Ann Arbor, Michigan 48109-2218, United States","School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Washtenaw 100, Ann Arbor, Michigan 48109-2218, United States","institution_ids":["https://openalex.org/I199037182","https://openalex.org/I27837315"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052610760","display_name":"Yiheng Zhu","orcid":"https://orcid.org/0000-0002-3857-1533"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi-Heng Zhu","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059460328","display_name":"Fang Ge","orcid":"https://orcid.org/0000-0001-5792-5379"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Ge","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008960436","display_name":"Dong\u2010Jun Yu","orcid":"https://orcid.org/0000-0002-6786-8053"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dong-Jun Yu","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China"],"raw_orcid":"https://orcid.org/0000-0002-6786-8053","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Xiaolingwei 200, Nanjing 210094, P. R. China","institution_ids":["https://openalex.org/I36399199"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5008960436"],"corresponding_institution_ids":["https://openalex.org/I36399199"],"apc_list":null,"apc_paid":null,"fwci":0.5964,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.63003771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"60","issue":"6","first_page":"3295","last_page":"3303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7142511606216431},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5883891582489014},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5796785950660706},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5670979022979736},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.549449622631073},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.47500741481781006},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45681771636009216},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.41621094942092896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35077595710754395},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.20004823803901672},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12520098686218262},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08644494414329529}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7142511606216431},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5883891582489014},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5796785950660706},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5670979022979736},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.549449622631073},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.47500741481781006},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45681771636009216},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.41621094942092896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35077595710754395},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.20004823803901672},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12520098686218262},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08644494414329529},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.9b01207","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.9b01207","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:32338512","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32338512","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4975541918","display_name":"\u86cb\u767d\u8d28-\u914d\u4f53\u7ed1\u5b9a\u533a\u57df\u9884\u6d4b\u7684\u7279\u5f81\u62bd\u53d6\u53ca\u5b66\u4e60\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61373062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7660853887","display_name":null,"funder_award_id":"61876072","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8848677886","display_name":null,"funder_award_id":"KJ2018A0572","funder_id":"https://openalex.org/F4320334897","funder_display_name":"Natural Science Foundation of Anhui Province"},{"id":"https://openalex.org/G8879126380","display_name":"\u5927\u89c4\u6a21\u591a\u6e90\u5f02\u8d28\u86cb\u767d\u8d28\u6570\u636e\u6316\u6398\u4e2d\u7684\u82e5\u5e72\u5173\u952e\u95ee\u9898\u7814\u7a76","funder_award_id":"61772273","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334897","display_name":"Natural Science Foundation of Anhui Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1551915691","https://openalex.org/W1985854865","https://openalex.org/W1987134040","https://openalex.org/W2013425283","https://openalex.org/W2039359544","https://openalex.org/W2051210555","https://openalex.org/W2051925784","https://openalex.org/W2053411993","https://openalex.org/W2066283432","https://openalex.org/W2075867170","https://openalex.org/W2087300028","https://openalex.org/W2109109045","https://openalex.org/W2114340287","https://openalex.org/W2117515038","https://openalex.org/W2132555912","https://openalex.org/W2132813792","https://openalex.org/W2136280642","https://openalex.org/W2136989186","https://openalex.org/W2137965757","https://openalex.org/W2143210482","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2159409048","https://openalex.org/W2166701319","https://openalex.org/W2171641243","https://openalex.org/W2194775991","https://openalex.org/W2385735394","https://openalex.org/W2534596046","https://openalex.org/W2600704321","https://openalex.org/W2605650084","https://openalex.org/W2765742208","https://openalex.org/W2780845733","https://openalex.org/W2898210859","https://openalex.org/W2898320067","https://openalex.org/W2910754286","https://openalex.org/W2944535254","https://openalex.org/W2949867299","https://openalex.org/W2962734576","https://openalex.org/W2968295962","https://openalex.org/W2977360892","https://openalex.org/W3105405267","https://openalex.org/W3136918052","https://openalex.org/W4210702584","https://openalex.org/W4210958064"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3167935049","https://openalex.org/W3029198973","https://openalex.org/W4399254932"],"abstract_inverted_index":{"There":[0],"has":[1],"been":[2],"a":[3,68,154,159],"significant":[4],"improvement":[5],"in":[6,11,20],"protein":[7,62],"residue":[8],"contact":[9,22,58,72,150],"prediction":[10,23,77,151],"recent":[12,134],"years.":[13],"Nevertheless,":[14],"state-of-the-art":[15],"methods":[16,31],"still":[17],"show":[18,49],"deficiencies":[19],"the":[21,79,88,104,109,127,146,179],"of":[24,103,148,185],"proteins":[25],"with":[26,46,86,131],"low-homology":[27],"information.":[28,96],"These":[29],"top":[30],"depend":[32],"largely":[33],"on":[34,126,140,178],"statistical":[35],"features":[36],"that":[37,50,75,119],"derived":[38],"from":[39],"homologous":[40],"sequences,":[41],"but":[42],"previous":[43],"studies,":[44],"along":[45],"our":[47],"analyses,":[48],"they":[51],"are":[52],"insufficient":[53],"for":[54,60,170],"inferencing":[55],"an":[56],"accurate":[57,123],"map":[59],"nonhomology":[61,141,180],"targets.":[63,142,181],"To":[64],"compensate,":[65],"we":[66,144],"proposed":[67,98,166],"brand":[69],"new":[70],"single-sequence-based":[71,149],"predictor":[73],"(SSCpred)":[74],"performs":[76],"through":[78],"deep":[80],"fully":[81],"convolutional":[82],"network":[83],"(Deep":[84],"FCN)":[85],"only":[87],"target":[89,105],"sequence":[90,106],"itself,":[91],"i.e.,":[92],"without":[93,157],"additional":[94],"homology":[95],"The":[97,165,182],"pipeline":[99,156],"makes":[100],"good":[101],"use":[102],"by":[107],"utilizing":[108],"pair-wise":[110],"encoding":[111],"technique":[112],"and":[113,152,161,174],"Deep":[114],"FCN.":[115],"Experimental":[116],"results":[117],"demonstrated":[118],"SSCpred":[120,136,167,186],"can":[121,168],"produce":[122],"predictions":[124],"based":[125],"efficient":[128],"pipeline.":[129],"Compared":[130],"several":[132],"most":[133],"methods,":[135],"achieves":[137,175],"completive":[138],"performance":[139,177],"Overall,":[143],"explored":[145],"possibilities":[147],"designed":[153],"novel":[155],"using":[158],"complex":[160],"redundant":[162],"feature":[163],"set.":[164],"compensate":[169],"current":[171],"methods'":[172],"disadvantages":[173],"better":[176],"web":[183],"server":[184],"is":[187],"freely":[188],"available":[189],"at":[190],"http://csbio.njust.edu.cn/bioinf/sscpred/.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
