{"id":"https://openalex.org/W3205544549","doi":"https://doi.org/10.1089/cmb.2021.0273","title":"MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples","display_name":"MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples","publication_year":2021,"publication_date":"2021-10-19","ids":{"openalex":"https://openalex.org/W3205544549","doi":"https://doi.org/10.1089/cmb.2021.0273","mag":"3205544549","pmid":"https://pubmed.ncbi.nlm.nih.gov/34665648"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2021.0273","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2021.0273","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110787381","display_name":"Gustavo Arango-Argoty","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gustavo A. Arango-argoty","raw_affiliation_strings":["Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lenwood S. Heath","raw_affiliation_strings":["Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA"],"raw_orcid":"https://orcid.org/0000-0003-1608-431X","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046181665","display_name":"Amy Pruden","orcid":"https://orcid.org/0000-0002-3191-6244"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy Pruden","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075592885","display_name":"Peter J. Vikesland","orcid":"https://orcid.org/0000-0003-2654-5132"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter J. Vikesland","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061868278","display_name":"Liqing Zhang","orcid":"https://orcid.org/0000-0003-4660-9199"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liqing Zhang","raw_affiliation_strings":["Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA"],"raw_orcid":"https://orcid.org/0000-0003-4660-9199","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Virginia Tech, Blacksburg, Virginia, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5061868278"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":0.3172,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.55744386,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"11","first_page":"1063","last_page":"1074"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8877855539321899},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6792227029800415},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4641854166984558},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4378758668899536},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4200442433357239},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3814576268196106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24424469470977783},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1814737617969513},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09773552417755127}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8877855539321899},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6792227029800415},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4641854166984558},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4378758668899536},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4200442433357239},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3814576268196106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24424469470977783},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1814737617969513},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09773552417755127}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1089/cmb.2021.0273","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2021.0273","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:34665648","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34665648","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1558365920","https://openalex.org/W1579534339","https://openalex.org/W2003347102","https://openalex.org/W2040805829","https://openalex.org/W2045204781","https://openalex.org/W2055043387","https://openalex.org/W2089499735","https://openalex.org/W2093931624","https://openalex.org/W2121873871","https://openalex.org/W2122210493","https://openalex.org/W2124351063","https://openalex.org/W2135621733","https://openalex.org/W2136145671","https://openalex.org/W2158714788","https://openalex.org/W2159954944","https://openalex.org/W2171963266","https://openalex.org/W2187089797","https://openalex.org/W2194172909","https://openalex.org/W2528399578","https://openalex.org/W2528511189","https://openalex.org/W2592811885","https://openalex.org/W2610513867","https://openalex.org/W2728028487","https://openalex.org/W2761430568","https://openalex.org/W2791796577","https://openalex.org/W2950150251","https://openalex.org/W2951274106","https://openalex.org/W2955167895"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W2033914206","https://openalex.org/W2042327336","https://openalex.org/W2049864679"],"abstract_inverted_index":{"The":[0],"functional":[1,26,35,122],"profile":[2,51,121],"of":[3,9,18,88,157,163],"metagenomic":[4,52],"samples":[5,53],"enables":[6,130],"improved":[7],"understanding":[8],"microbial":[10],"populations":[11],"in":[12,80,187],"the":[13,164],"environment.":[14],"Such":[15],"analysis":[16],"consists":[17],"assigning":[19],"short":[20],"sequencing":[21],"reads":[22,158,186],"to":[23,50,120,138,151,172],"a":[24,100,113,135,153,191],"particular":[25],"category.":[27],"Normally,":[28],"manually":[29],"curated":[30,55],"databases":[31],"are":[32,39],"used":[33,49],"for":[34],"assignment,":[36],"and":[37,63,111,144,179],"genes":[38],"arranged":[40],"into":[41],"different":[42],"classes.":[43],"Sequence":[44],"alignment":[45,167],"has":[46],"been":[47,78],"widely":[48],"against":[54],"databases.":[56],"However,":[57],"this":[58,93],"method":[59,103],"is":[60,124,149,195],"time":[61],"consuming":[62],"requires":[64],"high":[65],"computational":[66],"resources.":[67],"While":[68],"several":[69],"alignment-free":[70],"methods":[71],"based":[72],"on":[73,190],"k":[74,146],"-mer":[75],"composition":[76],"have":[77],"developed":[79],"recent":[81],"years,":[82],"they":[83],"still":[84],"require":[85],"large":[86],"amounts":[87],"computer":[89],"main":[90],"memory.":[91],"In":[92],"article,":[94],"MetaMLP":[95,129,148,182],"(Metagenomics":[96],"Machine":[97],"Learning":[98],"Profiler),":[99],"machine":[101],"learning":[102],"that":[104],"represents":[105],"sequences":[106],"as":[107,169,171],"numerical":[108],"vectors":[109],"(embeddings)":[110],"uses":[112],"simple":[114],"one":[115],"hidden":[116],"layer":[117],"neural":[118],"network":[119],"categories,":[123],"developed.":[125],"Unlike":[126],"other":[127],"methods,":[128],"partial":[131,145],"matching":[132],"by":[133],"using":[134],"reduced":[136],"alphabet":[137],"build":[139],"sequence":[140,166],"embeddings":[141],"from":[142],"full":[143],"-mers.":[147],"able":[150],"identify":[152],"slightly":[154],"larger":[155],"number":[156],"compared":[159],"with":[160,176],"DIAMOND":[161],"(one":[162],"fastest":[165],"methods),":[168],"well":[170],"perform":[173],"accurate":[174],"predictions":[175],"0.99":[177,180],"precision":[178],"recall.":[181],"can":[183],"process":[184],"100M":[185],"\u223c10":[188],"minutes":[189],"laptop":[192],"computer,":[193],"which":[194],"50":[196],"times":[197],"faster":[198],"than":[199],"DIAMOND.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
