{"id":"https://openalex.org/W4214695631","doi":"https://doi.org/10.1089/cmb.2021.0351","title":"Comparing Phylogenetic Trees Side by Side Through iPhyloC, a New Interactive Web-Based Framework","display_name":"Comparing Phylogenetic Trees Side by Side Through iPhyloC, a New Interactive Web-Based Framework","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4214695631","doi":"https://doi.org/10.1089/cmb.2021.0351","pmid":"https://pubmed.ncbi.nlm.nih.gov/35230147"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2021.0351","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2021.0351","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016138306","display_name":"Muhsen Hammoud","orcid":"https://orcid.org/0000-0002-9460-3085"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Muhsen Hammoud","raw_affiliation_strings":["Centro de Matem\u00e1tica, Computa\u00e7\u00e3o e Cogni\u00e7\u00e3o, Universidade Federal do ABC, Santo Andr\u00e9, Brasil"],"raw_orcid":"https://orcid.org/0000-0002-9460-3085","affiliations":[{"raw_affiliation_string":"Centro de Matem\u00e1tica, Computa\u00e7\u00e3o e Cogni\u00e7\u00e3o, Universidade Federal do ABC, Santo Andr\u00e9, Brasil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061285429","display_name":"Charles Morphy D. Santos","orcid":"https://orcid.org/0000-0001-5577-0799"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Charles Morphy D. Santos","raw_affiliation_strings":["Centro de Ci\u00eancias Naturais e Humanas, Laborat\u00f3rio de Sistem\u00e1tica e Diversidade, Universidade Federal do ABC, Santo Andr\u00e9, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ci\u00eancias Naturais e Humanas, Laborat\u00f3rio de Sistem\u00e1tica e Diversidade, Universidade Federal do ABC, Santo Andr\u00e9, Brasil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059881766","display_name":"Jo\u00e3o Paulo Gois","orcid":"https://orcid.org/0000-0002-9437-6943"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Paulo Gois","raw_affiliation_strings":["Centro de Matem\u00e1tica, Computa\u00e7\u00e3o e Cogni\u00e7\u00e3o, Universidade Federal do ABC, Santo Andr\u00e9, Brasil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Matem\u00e1tica, Computa\u00e7\u00e3o e Cogni\u00e7\u00e3o, Universidade Federal do ABC, Santo Andr\u00e9, Brasil","institution_ids":["https://openalex.org/I71715416"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5016138306"],"corresponding_institution_ids":["https://openalex.org/I71715416"],"apc_list":null,"apc_paid":null,"fwci":0.4189,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72187618,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"29","issue":"3","first_page":"292","last_page":"303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12001","display_name":"Fossil Insects in Amber","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/supertree","display_name":"Supertree","score":0.9091613292694092},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.813727617263794},{"id":"https://openalex.org/keywords/cladistics","display_name":"Cladistics","score":0.6334921717643738},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5132453441619873},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4937640130519867},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48195263743400574},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4604542553424835},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.4180849492549896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38272324204444885},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.19769224524497986},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18505683541297913},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.12686339020729065},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.0801565945148468}],"concepts":[{"id":"https://openalex.org/C55919133","wikidata":"https://www.wikidata.org/wiki/Q7644297","display_name":"Supertree","level":4,"score":0.9091613292694092},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.813727617263794},{"id":"https://openalex.org/C20822588","wikidata":"https://www.wikidata.org/wiki/Q192210","display_name":"Cladistics","level":4,"score":0.6334921717643738},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5132453441619873},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4937640130519867},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48195263743400574},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4604542553424835},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.4180849492549896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38272324204444885},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.19769224524497986},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18505683541297913},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.12686339020729065},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.0801565945148468},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1089/cmb.2021.0351","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2021.0351","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443","https://openalex.org/P4310320017"],"host_organization_lineage_names":["Mary Ann Liebert, Inc.","SAGE Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:35230147","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35230147","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W62347558","https://openalex.org/W1586687549","https://openalex.org/W1605984840","https://openalex.org/W1979065931","https://openalex.org/W1994589056","https://openalex.org/W2060425093","https://openalex.org/W2064657914","https://openalex.org/W2072349242","https://openalex.org/W2074494141","https://openalex.org/W2144320230","https://openalex.org/W2151409320","https://openalex.org/W2157701114","https://openalex.org/W2207526553","https://openalex.org/W2287520872","https://openalex.org/W2321544600","https://openalex.org/W2342577284","https://openalex.org/W2423687995","https://openalex.org/W2475481088","https://openalex.org/W2513727910","https://openalex.org/W2534136192","https://openalex.org/W2883315617","https://openalex.org/W2913767699","https://openalex.org/W2921633248","https://openalex.org/W4214535465","https://openalex.org/W4232804470","https://openalex.org/W4250329948","https://openalex.org/W4252937468"],"related_works":["https://openalex.org/W2145844324","https://openalex.org/W3111214985","https://openalex.org/W70956880","https://openalex.org/W4233205955","https://openalex.org/W2086288781","https://openalex.org/W2570931575","https://openalex.org/W2267686374","https://openalex.org/W2168234145","https://openalex.org/W2092356299","https://openalex.org/W2245513124"],"abstract_inverted_index":{"Current":[0],"frameworks":[1],"of":[2,42,69],"side-by-side":[3],"phylogenetic":[4,60,103],"trees":[5,14,21,38,61,97],"comparison":[6,77],"face":[7],"two":[8],"issues:":[9],"(1)":[10],"accepting":[11],"mainly":[12],"binary":[13],"as":[15,110],"input":[16,20,75],"and":[17,89,98],"(2)":[18],"assuming":[19],"having":[22],"identical":[23],"or":[24],"highly":[25],"overlapping":[26],"taxa.":[27,43],"However,":[28],"cladistic":[29],"comparative":[30],"studies":[31],"often":[32],"lead":[33],"with":[34,39],"multiple":[35],"nontotally":[36],"resolved":[37],"nonidentical":[40],"sets":[41],"We":[44],"tackle":[45],"these":[46],"issues":[47],"in":[48,73],"this":[49],"study,":[50],"presenting":[51],"the":[52,70,74,102,106],"iPhyloC,":[53],"an":[54],"interactive":[55],"web-based":[56],"framework":[57],"for":[58],"comparing":[59],"side":[62],"by":[63],"side.":[64],"iPhyloC":[65,92],"supports":[66],"automatic":[67],"identification":[68],"common":[71],"taxa":[72],"trees,":[76,88],"options":[78],"between":[79],"them,":[80],"intuitive":[81],"design,":[82],"high":[83],"usability,":[84],"scalability":[85],"to":[86],"large":[87],"cross-platform":[90],"support.":[91],"was":[93],"tested":[94],"using":[95],"different":[96],"a":[99],"supertree":[100],"depicting":[101],"relationships":[104],"within":[105],"insect":[107],"order":[108],"Diptera":[109],"examples.":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-15T07:11:24.734988","created_date":"2025-10-10T00:00:00"}
