{"id":"https://openalex.org/W4411042689","doi":"https://doi.org/10.1093/bib/bbaf238","title":"RLEAAI: improving antibody\u2013antigen interaction prediction using protein language model and sequence order information","display_name":"RLEAAI: improving antibody\u2013antigen interaction prediction using protein language model and sequence order information","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4411042689","doi":"https://doi.org/10.1093/bib/bbaf238","pmid":"https://pubmed.ncbi.nlm.nih.gov/40462512"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaf238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf238","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf238/63431150/bbaf238.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf238/63431150/bbaf238.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029914279","display_name":"Jun Hu","orcid":"https://orcid.org/0000-0001-9202-7515"},"institutions":[{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]},{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Hu","raw_affiliation_strings":["Center for AI and Computational Biology, Suzhou Institute of Systems Medicine , 100 Chongwen Road, Suzhou 215123 ,","College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,"],"raw_orcid":"https://orcid.org/0000-0001-9202-7515","affiliations":[{"raw_affiliation_string":"Center for AI and Computational Biology, Suzhou Institute of Systems Medicine , 100 Chongwen Road, Suzhou 215123 ,","institution_ids":["https://openalex.org/I4210122727"]},{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,","institution_ids":["https://openalex.org/I55712492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016175345","display_name":"Yu Zhou","orcid":"https://orcid.org/0000-0003-4188-9953"},"institutions":[{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhou","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,","institution_ids":["https://openalex.org/I55712492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5118983695","display_name":"Wenyi Zhang","orcid":"https://orcid.org/0000-0002-8850-5235"},"institutions":[{"id":"https://openalex.org/I3133055985","display_name":"Westlake University","ror":"https://ror.org/05hfa4n20","country_code":"CN","type":"education","lineage":["https://openalex.org/I3133055985"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen-Yi Zhang","raw_affiliation_strings":["Westlake AI Therapeutics Lab, Westlake Laboratory of Life Sciences and Biomedicine , 18 Shilongshan Road, Hangzhou, Zhejiang 310024 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Westlake AI Therapeutics Lab, Westlake Laboratory of Life Sciences and Biomedicine , 18 Shilongshan Road, Hangzhou, Zhejiang 310024 ,","institution_ids":["https://openalex.org/I3133055985"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023785113","display_name":"Xiaogen Zhou","orcid":"https://orcid.org/0000-0001-6839-1923"},"institutions":[{"id":"https://openalex.org/I55712492","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08","country_code":"CN","type":"education","lineage":["https://openalex.org/I55712492"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao-Gen Zhou","raw_affiliation_strings":["College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,"],"raw_orcid":"https://orcid.org/0000-0001-6839-1923","affiliations":[{"raw_affiliation_string":"College of Information Engineering, Zhejiang University of Technology , 288 Liuhe Road, Liuxia Street, Xihu District, Hangzhou 310023 ,","institution_ids":["https://openalex.org/I55712492"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.8981,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85349675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"26","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7483727335929871},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6125706434249878},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5406747460365295},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5256142020225525},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5210268497467041},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5201042890548706},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.5110915303230286},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5097929835319519},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.5090610384941101},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4391523003578186},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3827606439590454},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3266575336456299},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07490146160125732}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7483727335929871},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6125706434249878},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5406747460365295},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5256142020225525},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5210268497467041},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5201042890548706},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.5110915303230286},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5097929835319519},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.5090610384941101},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4391523003578186},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3827606439590454},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3266575336456299},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07490146160125732},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaf238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf238","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf238/63431150/bbaf238.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40462512","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40462512","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12133683","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12133683","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaf238","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaf238","pdf_url":"https://academic.oup.com/bib/article-pdf/26/3/bbaf238/63431150/bbaf238.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"},{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G571753479","display_name":null,"funder_award_id":"61902352","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7271978295","display_name":null,"funder_award_id":"62203389","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322927","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884"},{"id":"https://openalex.org/F4320325031","display_name":"Zhejiang University of Technology","ror":"https://ror.org/02djqfd08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411042689.pdf","grobid_xml":"https://content.openalex.org/works/W4411042689.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1568693476","https://openalex.org/W1591801644","https://openalex.org/W1832693441","https://openalex.org/W1989639228","https://openalex.org/W1995129977","https://openalex.org/W2017158341","https://openalex.org/W2099753515","https://openalex.org/W2102461176","https://openalex.org/W2152084880","https://openalex.org/W2255466643","https://openalex.org/W2474760928","https://openalex.org/W2559258718","https://openalex.org/W2608823051","https://openalex.org/W2748772622","https://openalex.org/W2782661480","https://openalex.org/W2808491442","https://openalex.org/W2910384850","https://openalex.org/W2948035163","https://openalex.org/W2957436444","https://openalex.org/W3013449264","https://openalex.org/W3035163373","https://openalex.org/W3048406079","https://openalex.org/W3049166744","https://openalex.org/W3088521725","https://openalex.org/W3096510866","https://openalex.org/W3122210777","https://openalex.org/W3146135000","https://openalex.org/W3177500196","https://openalex.org/W4214886481","https://openalex.org/W4245488313","https://openalex.org/W4255957063","https://openalex.org/W4307432689","https://openalex.org/W4308432368","https://openalex.org/W4312187703","https://openalex.org/W4327550249","https://openalex.org/W4366998330","https://openalex.org/W4378714914","https://openalex.org/W4381327801","https://openalex.org/W4391618879","https://openalex.org/W4391967190","https://openalex.org/W4392747647","https://openalex.org/W4396721167","https://openalex.org/W4404106711","https://openalex.org/W4406766910","https://openalex.org/W4407370087"],"related_works":["https://openalex.org/W4225394202","https://openalex.org/W4298287631","https://openalex.org/W2953061907","https://openalex.org/W1847088711","https://openalex.org/W3036642985","https://openalex.org/W3032952384","https://openalex.org/W3017902212","https://openalex.org/W2964335273","https://openalex.org/W2982145560","https://openalex.org/W2966686650"],"abstract_inverted_index":{"Antibody-antigen":[0],"interactions":[1],"(AAIs)":[2],"are":[3,11,124],"a":[4,51,66,90,156],"pervasive":[5],"phenomenon":[6],"in":[7,13],"the":[8,14,20,30,40,59,85,101,162,167,183],"natural":[9],"and":[10,119,145,158],"instrumental":[12],"design":[15],"of":[16,22,32,36,42,62,73,138,143,153,175,182,190],"antibody-based":[17],"drugs.":[18],"Despite":[19],"emergence":[21],"various":[23],"deep":[24,53],"learning-based":[25,54],"methods":[26],"aimed":[27],"at":[28,195],"enhancing":[29],"accuracy":[31,142],"AAIs":[33],"predictions,":[34],"most":[35],"these":[37],"approaches":[38],"overlook":[39],"significance":[41],"sequence":[43,67],"order":[44,68,96],"information.":[45],"In":[46,64,95],"this":[47],"study,":[48],"we":[49],"propose":[50],"new":[52],"method":[55,164,185],"RLEAAI,":[56,65],"to":[57,80,97],"improve":[58],"prediction":[60],"performance":[61],"AAIs.":[63],"extraction":[69],"strategy,":[70],"called":[71],"Composition":[72],"K-Spaced":[74],"Amino":[75],"Acid":[76],"Pairs,":[77],"is":[78,136,177,192],"employed":[79],"generate":[81],"feature":[82,86],"representation":[83],"from":[84,104],"embedding":[87],"outputted":[88],"by":[89],"pre-trained":[91],"protein":[92],"language":[93],"model.":[94],"fully":[98],"dig":[99],"out":[100],"discrimination":[102],"information":[103],"features,":[105],"three":[106],"neural":[107,112],"network":[108,118],"modules,":[109],"i.e.":[110],"convolutional":[111],"network,":[113],"bidirectional":[114],"long":[115],"short-term":[116],"memory":[117],"recurrent":[120],"criss-cross":[121],"attention":[122],"mechanism,":[123],"integrated.":[125],"Benchmarked":[126],"results":[127],"on":[128,173],"two":[129],"independent":[130],"test":[131],"sets":[132],"demonstrate":[133],"that":[134,181],"RLEAAI":[135,176,191],"capable":[137],"achieving":[139],"an":[140,146],"average":[141,147],"0.7787":[144],"Matthews's":[148],"correlation":[149],"coefficient":[150],"(MCC)":[151],"value":[152,171],"0.5552,":[154],"representing":[155],"5.2%":[157],"15.8%":[159],"improvement":[160],"over":[161],"start-of-the-art":[163],"DeepAAI.":[165,186],"Furthermore,":[166],"complementary":[168],"determining":[169],"regions-sensitivity":[170],"calculated":[172],"MCC":[174],"216.4%":[178],"higher":[179],"than":[180],"state-of-the-art":[184],"The":[187],"standalone":[188],"package":[189],"freely":[193],"available":[194],"https://github.com/zhouyu9931/RLEAAI.git.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
