{"id":"https://openalex.org/W3184554417","doi":"https://doi.org/10.1093/bioinformatics/btab542","title":"Ranked choice voting for representative transcripts with TRaCE","display_name":"Ranked choice voting for representative transcripts with TRaCE","publication_year":2021,"publication_date":"2021-07-22","ids":{"openalex":"https://openalex.org/W3184554417","doi":"https://doi.org/10.1093/bioinformatics/btab542","mag":"3184554417","pmid":"https://pubmed.ncbi.nlm.nih.gov/34297055"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/261/41891237/btab542.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/261/41891237/btab542.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089477212","display_name":"Andrew Olson","orcid":"https://orcid.org/0000-0003-4946-9021"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew J Olson","raw_affiliation_strings":["Plant Biology, Cold Spring Harbor Laboratory , Cold Spring Harbor, NY 11768, USA"],"raw_orcid":"https://orcid.org/0000-0003-4946-9021","affiliations":[{"raw_affiliation_string":"Plant Biology, Cold Spring Harbor Laboratory , Cold Spring Harbor, NY 11768, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077105419","display_name":"Doreen Ware","orcid":"https://orcid.org/0000-0002-8125-3821"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I4210142299","display_name":"Robert W. Holley Center for Agriculture & Health","ror":"https://ror.org/050z40a57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210138094","https://openalex.org/I4210142299"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doreen Ware","raw_affiliation_strings":["Plant Biology, Cold Spring Harbor Laboratory , Cold Spring Harbor, NY 11768, USA","USDA ARS Robert W. Holley Center for Agriculture and Health Cornell University , Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology, Cold Spring Harbor Laboratory , Cold Spring Harbor, NY 11768, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"USDA ARS Robert W. Holley Center for Agriculture and Health Cornell University , Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210142299"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5089477212"],"corresponding_institution_ids":["https://openalex.org/I2750212522"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3696,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.55189151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"1","first_page":"261","last_page":"264"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13920000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13920000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.13529999554157257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.08410000056028366,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/voting","display_name":"Voting","score":0.7861559987068176},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.722486674785614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4653080105781555},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.342867374420166},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21599683165550232},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.17258504033088684}],"concepts":[{"id":"https://openalex.org/C520049643","wikidata":"https://www.wikidata.org/wiki/Q189760","display_name":"Voting","level":3,"score":0.7861559987068176},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.722486674785614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4653080105781555},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.342867374420166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21599683165550232},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.17258504033088684},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011057","descriptor_name":"Politics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011057","descriptor_name":"Politics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011057","descriptor_name":"Politics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011057","descriptor_name":"Politics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/261/41891237/btab542.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34297055","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34297055","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:40304","is_oa":false,"landing_page_url":"https://repository.cshl.edu/id/eprint/40304/1/2021.Olson.Ranked_choice_transcripts.pdf","pdf_url":"https://repository.cshl.edu/id/eprint/40304/1/2021.Olson.Ranked_choice_transcripts.pdf","source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Paper"},{"id":"pmh:oai:pubmedcentral.nih.gov:8696091","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696091","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab542","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab542","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/261/41891237/btab542.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5199999809265137,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4639187575","display_name":null,"funder_award_id":"1907-21000-030-00D","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3184554417.pdf","grobid_xml":"https://content.openalex.org/works/W3184554417.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W626692","https://openalex.org/W1494284268","https://openalex.org/W2026370517","https://openalex.org/W2052337103","https://openalex.org/W2109936378","https://openalex.org/W2141165178","https://openalex.org/W2154139219","https://openalex.org/W2281531600","https://openalex.org/W2463761386","https://openalex.org/W2510875395","https://openalex.org/W2766459919","https://openalex.org/W2784823578","https://openalex.org/W2895075169","https://openalex.org/W2898598946","https://openalex.org/W2907489510","https://openalex.org/W2941629467","https://openalex.org/W2981398720","https://openalex.org/W3104343176","https://openalex.org/W3189525949","https://openalex.org/W4210702584","https://openalex.org/W4244872081","https://openalex.org/W4247412012","https://openalex.org/W6799786356"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2131958170","https://openalex.org/W2530322880"],"abstract_inverted_index":{"SUMMARY:":[0],"Genome":[1],"sequencing":[2],"projects":[3],"annotate":[4],"protein-coding":[5],"gene":[6,31],"models":[7],"with":[8,71],"multiple":[9,95],"transcripts,":[10,42],"aiming":[11],"to":[12,99],"represent":[13],"all":[14,101],"of":[15,56,97,110],"the":[16,36,87,91,102,108,117],"available":[17,152],"transcript":[18,29],"evidence.":[19],"However,":[20],"downstream":[21],"analyses":[22],"often":[23],"operate":[24],"on":[25,107,143],"only":[26],"one":[27],"representative":[28],"per":[30],"locus,":[32],"sometimes":[33],"known":[34],"as":[35,75,86],"canonical":[37,41,88],"transcript.":[38],"To":[39],"choose":[40],"Transcript":[43,137],"Ranking":[44],"and":[45,78],"Canonical":[46],"Election":[47],"(TRaCE)":[48],"holds":[49],"an":[50],"'election'":[51],"in":[52,131],"which":[53],"a":[54,122],"set":[55,109],"RNA-seq":[57],"samples":[58],"rank":[59],"transcripts":[60,103,129],"by":[61,104],"annotation":[62],"edit":[63],"distance.":[64],"These":[65],"sample-specific":[66],"votes":[67],"are":[68,151],"tallied":[69],"along":[70],"other":[72],"criteria":[73],"such":[74],"protein":[76],"length":[77],"InterPro":[79],"domain":[80],"coverage.":[81],"The":[82],"winner":[83],"is":[84],"selected":[85],"transcript,":[89],"but":[90],"election":[92],"proceeds":[93],"through":[94],"rounds":[96],"voting":[98],"order":[100],"relevance.":[105],"Based":[106],"expression":[111,124],"data":[112,150],"provided,":[113],"TRaCE":[114],"can":[115,140],"identify":[116],"most":[118],"common":[119],"isoforms":[120],"from":[121],"broad":[123],"atlas":[125],"or":[126],"prioritize":[127],"alternative":[128],"expressed":[130],"specific":[132],"contexts.":[133],"AVAILABILITY":[134],"AND":[135],"IMPLEMENTATION:":[136],"ranking":[138],"code":[139],"be":[141],"found":[142],"GitHub":[144],"at":[145,153],"{{https://github.com/warelab/TRaCE}}.":[146],"SUPPLEMENTARY":[147],"INFORMATION:":[148],"Supplementary":[149],"Bioinformatics":[154],"online.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
