{"id":"https://openalex.org/W3197524792","doi":"https://doi.org/10.1093/bioinformatics/btab637","title":"A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors","display_name":"A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors","publication_year":2021,"publication_date":"2021-09-06","ids":{"openalex":"https://openalex.org/W3197524792","doi":"https://doi.org/10.1093/bioinformatics/btab637","mag":"3197524792","pmid":"https://pubmed.ncbi.nlm.nih.gov/34487148"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab637","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab637","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060692/pdf/btab637.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018744658","display_name":"Kevin A. Murgas","orcid":"https://orcid.org/0000-0001-8634-2893"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin A Murgas","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University School of Medicine , Stony Brook, NY 11794, USA"],"raw_orcid":"https://orcid.org/0000-0001-8634-2893","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University School of Medicine , Stony Brook, NY 11794, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090837645","display_name":"Yanlin Ma","orcid":"https://orcid.org/0000-0001-9668-0204"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanlin Ma","raw_affiliation_strings":["Center for Public Health Genomics, University of Virginia , Charlottesville, VA 22903, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Public Health Genomics, University of Virginia , Charlottesville, VA 22903, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077699186","display_name":"Lidea Shahidi","orcid":"https://orcid.org/0000-0003-1369-6011"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lidea K Shahidi","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Duke University , Durham, NC 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University , Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014241799","display_name":"Sayan Mukherjee","orcid":"https://orcid.org/0000-0002-6715-3920"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sayan Mukherjee","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, Duke University , Durham, NC 27710, USA","Department of Computer Science, Duke University , Durham, NC 27708, USA","Department of Mathematics, Duke University , Durham, NC 27708, USA","Department of Statistical Science, Duke University , Durham, NC 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, Duke University , Durham, NC 27710, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University , Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Mathematics, Duke University , Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Statistical Science, Duke University , Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026198048","display_name":"Andrew S. Allen","orcid":"https://orcid.org/0000-0002-7232-2143"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew S Allen","raw_affiliation_strings":["Department of Bioinformatics and Biostatistics, Duke University , Durham, NC 27710, USA","Duke Center for Statistical Genetics and Genomics, Duke University , Durham, NC 27710, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Biostatistics, Duke University , Durham, NC 27710, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Duke Center for Statistical Genetics and Genomics, Duke University , Durham, NC 27710, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026666281","display_name":"Darryl Shibata","orcid":"https://orcid.org/0000-0002-4567-1639"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Darryl Shibata","raw_affiliation_strings":["Department of Pathology, Keck School of Medicine, University of Southern California , Los Angeles, CA 90033, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Keck School of Medicine, University of Southern California , Los Angeles, CA 90033, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010686005","display_name":"Marc D. Ryser","orcid":"https://orcid.org/0000-0002-4990-0849"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marc D Ryser","raw_affiliation_strings":["Department of Mathematics, Duke University , Durham, NC 27708, USA","Department of Population Health Sciences, Duke University Medical Center , Durham, NC 27701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Duke University , Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Population Health Sciences, Duke University Medical Center , Durham, NC 27701, USA","institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210126298","https://openalex.org/I4210153043"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5010686005","https://openalex.org/A5026666281"],"corresponding_institution_ids":["https://openalex.org/I1174212","https://openalex.org/I170897317","https://openalex.org/I4210126298","https://openalex.org/I4210153043"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3942,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.49752382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"38","issue":"1","first_page":"22","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.3221000134944916,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.3221000134944916,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.20029999315738678,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.1177000030875206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7592217922210693},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.6612383127212524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5654067993164062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5597648024559021},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.4522361159324646},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4239524006843567},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3726434111595154},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19231277704238892}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7592217922210693},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.6612383127212524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5654067993164062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5597648024559021},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.4522361159324646},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4239524006843567},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3726434111595154},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19231277704238892}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab637","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab637","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34487148","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34487148","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10060692","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060692","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060692/pdf/btab637.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10060692","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060692","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060692/pdf/btab637.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2255748187","display_name":"Mathematical Analysis of Spatial Cancer Models","funder_award_id":"1614838","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2518323659","display_name":null,"funder_award_id":"T32\u2010GM008444","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3197524792.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1510695270","https://openalex.org/W1940241680","https://openalex.org/W1989277387","https://openalex.org/W1994126734","https://openalex.org/W2010457001","https://openalex.org/W2010873488","https://openalex.org/W2017502278","https://openalex.org/W2018115135","https://openalex.org/W2043033879","https://openalex.org/W2056040742","https://openalex.org/W2059172245","https://openalex.org/W2101870168","https://openalex.org/W2107079238","https://openalex.org/W2110065044","https://openalex.org/W2117247812","https://openalex.org/W2117515556","https://openalex.org/W2123491442","https://openalex.org/W2125154191","https://openalex.org/W2130826348","https://openalex.org/W2137462740","https://openalex.org/W2148521032","https://openalex.org/W2171346943","https://openalex.org/W2172388735","https://openalex.org/W2180291937","https://openalex.org/W2472461999","https://openalex.org/W2529024004","https://openalex.org/W2577537660","https://openalex.org/W2746672093","https://openalex.org/W2803156653","https://openalex.org/W2898789672","https://openalex.org/W2901675869","https://openalex.org/W2921051283","https://openalex.org/W2944944066","https://openalex.org/W2996041871","https://openalex.org/W3007178344","https://openalex.org/W3102147110","https://openalex.org/W3211402536","https://openalex.org/W4206037526","https://openalex.org/W4231254854","https://openalex.org/W6760353796","https://openalex.org/W6806115372","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W1455488868","https://openalex.org/W2902329290","https://openalex.org/W2052355316","https://openalex.org/W2128056428","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W1998349112","https://openalex.org/W2054863651"],"abstract_inverted_index":{"MOTIVATION:":[0],"Conservation":[1],"is":[2,232],"broadly":[3],"used":[4,24,180],"to":[5,25,32,92,101,108,141,165,181,200],"identify":[6,26,93,142,182],"biologically":[7],"important":[8],"(epi)genomic":[9],"regions.":[10],"In":[11],"the":[12,33,49,106,138,197,201,220],"case":[13],"of":[14,19,28,38,51,69,95,128,153,203],"tumor":[15,83],"growth,":[16],"preferential":[17,135,175],"conservation":[18,40,90,177],"DNA":[20],"methylation":[21,39,52,70,98,110,148,176],"can":[22],"be":[23,179],"areas":[27],"particular":[29],"functional":[30],"importance":[31],"tumor.":[34],"However,":[35],"reliable":[36],"assessment":[37],"based":[41,146],"on":[42,71,147],"multiple":[43,55],"tissue":[44,76],"samples":[45],"per":[46],"patient":[47],"requires":[48],"decomposition":[50,68],"variation":[53,80,99],"at":[54,234,242],"levels.":[56],"RESULTS:":[57],"We":[58,85,104],"developed":[59],"a":[60,88,120],"Bayesian":[61],"hierarchical":[62],"model":[63,107,198],"that":[64,174,186],"allows":[65],"for":[66],"variance":[67],"three":[72],"levels:":[73],"between-patient":[74,78,102],"normal":[75],"variation,":[77],"tumor-effect":[79],"and":[81,162,168],"within-patient":[82],"variation.":[84,103],"then":[86],"defined":[87],"model-based":[89],"score":[91],"loci":[94],"reduced":[96],"within-tumor":[97],"relative":[100],"fit":[105],"multi-sample":[109,206],"array":[111],"data":[112,207,213,239],"from":[113],"21":[114],"colorectal":[115],"cancer":[116],"(CRC)":[117],"patients":[118],"using":[119],"Monte":[121],"Carlo":[122],"Markov":[123],"Chain":[124],"algorithm":[125],"(Stan).":[126],"Sets":[127],"genes":[129,145,156],"implicated":[130,157],"in":[131,191,219],"CRC":[132,159],"tumorigenesis":[133],"exhibited":[134],"conservation,":[136],"demonstrating":[137],"model's":[139],"ability":[140],"functionally":[143],"relevant":[144,160],"conservation.":[149],"A":[150],"pathway":[151],"analysis":[152,202,230],"preferentially":[154],"conserved":[155],"several":[158],"pathways":[161,163],"related":[164],"neoantigen":[166],"presentation":[167],"immune":[169],"evasion.":[170],"Our":[171],"findings":[172],"suggest":[173],"may":[178],"novel":[183],"gene":[184],"targets":[185],"are":[187,217,240],"not":[188],"consistently":[189],"mutated":[190],"CRC.":[192],"The":[193,212,228],"flexible":[194],"structure":[195],"makes":[196],"amenable":[199],"more":[204],"complex":[205],"structures.":[208],"AVAILABILITY":[209],"AND":[210],"IMPLEMENTATION:":[211],"underlying":[214],"this":[215],"article":[216],"available":[218,233,241],"NCBI":[221],"GEO":[222],"Database,":[223],"under":[224],"accession":[225],"code":[226,231],"GSE166212.":[227],"R":[229],"https://github.com/kevin-murgas/DNAmethylation-hierarchicalmodel.":[235],"SUPPLEMENTARY":[236],"INFORMATION:":[237],"Supplementary":[238],"Bioinformatics":[243],"online.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
