{"id":"https://openalex.org/W3210392179","doi":"https://doi.org/10.1093/bioinformatics/btab742","title":"SigTools: exploratory visualization for genomic signals","display_name":"SigTools: exploratory visualization for genomic signals","publication_year":2021,"publication_date":"2021-10-25","ids":{"openalex":"https://openalex.org/W3210392179","doi":"https://doi.org/10.1093/bioinformatics/btab742","mag":"3210392179","pmid":"https://pubmed.ncbi.nlm.nih.gov/34718413"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab742","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab742","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037604464","display_name":"Shohre Masoumi","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shohre Masoumi","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016115107","display_name":"Maxwell W. Libbrecht","orcid":"https://orcid.org/0000-0003-2502-0262"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Maxwell W Libbrecht","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049270004","display_name":"Kay C. Wiese","orcid":"https://orcid.org/0000-0003-4507-1892"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kay C Wiese","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada"],"raw_orcid":"https://orcid.org/0000-0003-4507-1892","affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037604464"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1586,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48790739,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"4","first_page":"1126","last_page":"1128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.24490000307559967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.24490000307559967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1597999930381775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11999999731779099,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7437622547149658},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7301863431930542},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.5729941725730896},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5117759108543396},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44809606671333313},{"id":"https://openalex.org/keywords/autocorrelation","display_name":"Autocorrelation","score":0.42369532585144043},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4029375910758972},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.375460684299469},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15706422924995422}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7437622547149658},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7301863431930542},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5729941725730896},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5117759108543396},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44809606671333313},{"id":"https://openalex.org/C5297727","wikidata":"https://www.wikidata.org/wiki/Q786970","display_name":"Autocorrelation","level":2,"score":0.42369532585144043},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4029375910758972},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.375460684299469},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15706422924995422},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab742","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab742","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34718413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34718413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2040909468","https://openalex.org/W2076154138","https://openalex.org/W2128016314","https://openalex.org/W2135993011","https://openalex.org/W2158019017","https://openalex.org/W2169497879","https://openalex.org/W2259938310","https://openalex.org/W2336957559","https://openalex.org/W2341539131","https://openalex.org/W2768013244","https://openalex.org/W2769438273","https://openalex.org/W2947060454","https://openalex.org/W2950199265","https://openalex.org/W2980904816","https://openalex.org/W3000121346","https://openalex.org/W4246717325"],"related_works":["https://openalex.org/W747394405","https://openalex.org/W178231042","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W1987236514","https://openalex.org/W174653542","https://openalex.org/W2808360891","https://openalex.org/W1932132538"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,39,45,56,59,119],"advancement":[3],"of":[4,17,47,58,122,137],"sequencing":[5],"technologies,":[6],"genomic":[7,27,30,67,78,102],"data":[8,19,24],"sets":[9],"are":[10,33,128],"constantly":[11],"being":[12],"expanded":[13],"by":[14,93,105],"high":[15],"volumes":[16],"different":[18],"types.":[20],"One":[21],"recently":[22],"introduced":[23],"type":[25],"in":[26,81],"science":[28],"is":[29,64,150],"signals,":[31],"which":[32],"usually":[34],"short-read":[35],"coverage":[36],"measurements":[37],"over":[38],"genome.":[40],"To":[41],"understand":[42,53],"and":[43,54,91,96,108,148],"evaluate":[44],"results":[46],"such":[48],"studies,":[49],"one":[50],"needs":[51],"to":[52,76,83,100,125],"analyze":[55],"characteristics":[57],"input":[60],"data.":[61],"RESULTS:":[62],"SigTools":[63,143],"an":[65],"R-based":[66],"signals":[68,79,103],"visualization":[69],"package":[70],"developed":[71],"with":[72,132],"two":[73],"objectives:":[74],"(i)":[75],"facilitate":[77],"exploration":[80],"order":[82],"uncover":[84],"insights":[85],"for":[86],"later":[87],"model":[88],"training,":[89],"refinement":[90],"development":[92],"including":[94,106],"distribution":[95],"autocorrelation":[97],"plots;":[98],"(ii)":[99],"enable":[101],"interpretation":[104],"correlation":[107],"aggregation":[109],"plots.":[110],"In":[111],"addition,":[112],"our":[113],"corresponding":[114],"web":[115],"application,":[116],"SigTools-Shiny,":[117],"extends":[118],"accessibility":[120],"scope":[121],"these":[123],"modules":[124],"people":[126],"who":[127],"more":[129],"comfortable":[130],"working":[131],"graphical":[133],"user":[134],"interfaces":[135],"instead":[136],"command-line":[138],"tools.":[139],"AVAILABILITY":[140],"AND":[141],"IMPLEMENTATION:":[142],"source":[144],"code,":[145],"installation":[146],"guide":[147],"manual":[149],"freely":[151],"available":[152],"on":[153],"http://github.com/shohre73.":[154]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
