{"id":"https://openalex.org/W3214635477","doi":"https://doi.org/10.1093/bioinformatics/btab763","title":"A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification","display_name":"A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification","publication_year":2021,"publication_date":"2021-11-09","ids":{"openalex":"https://openalex.org/W3214635477","doi":"https://doi.org/10.1093/bioinformatics/btab763","mag":"3214635477","pmid":"https://pubmed.ncbi.nlm.nih.gov/34788787"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1022/42319091/btab763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1022/42319091/btab763.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090489810","display_name":"Pontus Eriksson","orcid":"https://orcid.org/0000-0003-3317-865X"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Pontus Eriksson","raw_affiliation_strings":["Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden"],"raw_orcid":"https://orcid.org/0000-0003-3317-865X","affiliations":[{"raw_affiliation_string":"Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072519615","display_name":"Nour\u2010Al\u2010Dain Marzouka","orcid":"https://orcid.org/0000-0002-9029-3702"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Nour-al-dain Marzouka","raw_affiliation_strings":["Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-9029-3702","affiliations":[{"raw_affiliation_string":"Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075804863","display_name":"Gottfrid Sj\u00f6dahl","orcid":"https://orcid.org/0000-0002-7869-0473"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]},{"id":"https://openalex.org/I4210137844","display_name":"Sk\u00e5ne University Hospital","ror":"https://ror.org/02z31g829","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I4210137844"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Gottfrid Sj\u00f6dahl","raw_affiliation_strings":["Urology - urothelial cancer, Department of Translational Medicine, Lund University, Sk\u00e5ne University Hospital , Malm\u00f6, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Urology - urothelial cancer, Department of Translational Medicine, Lund University, Sk\u00e5ne University Hospital , Malm\u00f6, Sweden","institution_ids":["https://openalex.org/I187531555","https://openalex.org/I4210137844"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003446918","display_name":"Carina Bernardo","orcid":"https://orcid.org/0000-0002-1667-6510"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Carina Bernardo","raw_affiliation_strings":["Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-1667-6510","affiliations":[{"raw_affiliation_string":"Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025024372","display_name":"Fredrik Liedberg","orcid":"https://orcid.org/0000-0001-8193-0370"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]},{"id":"https://openalex.org/I4210137844","display_name":"Sk\u00e5ne University Hospital","ror":"https://ror.org/02z31g829","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I4210137844"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Fredrik Liedberg","raw_affiliation_strings":["Urology - urothelial cancer, Department of Translational Medicine, Lund University, Sk\u00e5ne University Hospital , Malm\u00f6, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Urology - urothelial cancer, Department of Translational Medicine, Lund University, Sk\u00e5ne University Hospital , Malm\u00f6, Sweden","institution_ids":["https://openalex.org/I187531555","https://openalex.org/I4210137844"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031028431","display_name":"Mattias H\u00f6glund","orcid":"https://orcid.org/0000-0001-9283-4421"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Mattias H\u00f6glund","raw_affiliation_strings":["Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Oncology, Department of Clinical Sciences, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090489810"],"corresponding_institution_ids":["https://openalex.org/I187531555"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7002,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.85042105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"38","issue":"4","first_page":"1022","last_page":"1029"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8973000049591064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8973000049591064,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.03889999911189079,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.018799999728798866,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.8008225560188293},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.7437400817871094},{"id":"https://openalex.org/keywords/centroid","display_name":"Centroid","score":0.7035827040672302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6281510591506958},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5691140294075012},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.566194474697113},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4955974817276001},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4639880657196045},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.44818994402885437},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4454421401023865},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.4214734733104706},{"id":"https://openalex.org/keywords/binary-classification","display_name":"Binary classification","score":0.4114510118961334},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3836801052093506},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.31493380665779114},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23277226090431213}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.8008225560188293},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.7437400817871094},{"id":"https://openalex.org/C146599234","wikidata":"https://www.wikidata.org/wiki/Q511093","display_name":"Centroid","level":2,"score":0.7035827040672302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6281510591506958},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5691140294075012},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.566194474697113},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4955974817276001},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4639880657196045},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.44818994402885437},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4454421401023865},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.4214734733104706},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.4114510118961334},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3836801052093506},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.31493380665779114},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23277226090431213},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1022/42319091/btab763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34788787","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34788787","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8796360","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8796360","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:lup.lub.lu.se:5592dfb0-d273-4a4b-a541-4fab264c0b79","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/5592dfb0-d273-4a4b-a541-4fab264c0b79","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab763","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab763","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1022/42319091/btab763.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G1467115074","display_name":null,"funder_award_id":"CAN 2020/709","funder_id":"https://openalex.org/F4320321491","funder_display_name":"Cancerfonden"},{"id":"https://openalex.org/G3771302966","display_name":null,"funder_award_id":"2019/51","funder_id":"https://openalex.org/F4320321491","funder_display_name":"Cancerfonden"},{"id":"https://openalex.org/G6265702644","display_name":null,"funder_award_id":"2019-","funder_id":"https://openalex.org/F4320321491","funder_display_name":"Cancerfonden"},{"id":"https://openalex.org/G8558859493","display_name":null,"funder_award_id":"REGSKANE-821461","funder_id":"https://openalex.org/F4320313624","funder_display_name":"Sk\u00e5ne County Council's Research and Development Foundation"}],"funders":[{"id":"https://openalex.org/F4320313624","display_name":"Sk\u00e5ne County Council's Research and Development Foundation","ror":null},{"id":"https://openalex.org/F4320321491","display_name":"Cancerfonden","ror":"https://ror.org/0527jb766"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3214635477.pdf","grobid_xml":"https://content.openalex.org/works/W3214635477.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1546709038","https://openalex.org/W2007615926","https://openalex.org/W2053520154","https://openalex.org/W2114754216","https://openalex.org/W2119589567","https://openalex.org/W2138550913","https://openalex.org/W2142595214","https://openalex.org/W2150022898","https://openalex.org/W2156665896","https://openalex.org/W2157168213","https://openalex.org/W2157395790","https://openalex.org/W2157840751","https://openalex.org/W2171528238","https://openalex.org/W2185207072","https://openalex.org/W2410597368","https://openalex.org/W2588621824","https://openalex.org/W2599565316","https://openalex.org/W2606715885","https://openalex.org/W2763670669","https://openalex.org/W2770698352","https://openalex.org/W2791111208","https://openalex.org/W2792135005","https://openalex.org/W2795989238","https://openalex.org/W2809514549","https://openalex.org/W2911964244","https://openalex.org/W2912573440","https://openalex.org/W2969909201","https://openalex.org/W2975497362","https://openalex.org/W2993894543","https://openalex.org/W3080717832","https://openalex.org/W3102027041","https://openalex.org/W3104999573","https://openalex.org/W3128152036","https://openalex.org/W3153221280","https://openalex.org/W6748685817"],"related_works":["https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W1987896487","https://openalex.org/W4229853287","https://openalex.org/W1535483699","https://openalex.org/W2333832190","https://openalex.org/W2068445477"],"abstract_inverted_index":{"MOTIVATION:":[0],"Gene":[1],"expression-based":[2,177],"multiclass":[3,106,277],"prediction,":[4,263],"such":[5],"as":[6,40,223],"tumor":[7,152],"subtyping,":[8],"is":[9,97,256],"a":[10,35,57,121,236,240],"non-trivial":[11],"bioinformatic":[12],"problem.":[13],"Most":[14],"classifier":[15],"methods":[16,45,182],"operate":[17],"by":[18],"comparing":[19],"expression":[20,32,89,136,157],"levels":[21],"relative":[22],"to":[23,48,56,85,129,279],"other":[24],"samples.":[25,197],"Methods":[26],"that":[27,141,169,243],"base":[28],"predictions":[29],"on":[30,109,175,229],"the":[31,49,102,139,267,280],"pattern":[33],"within":[34],"sample":[36,58,67],"have":[37,146,220],"been":[38,221],"proposed":[39],"an":[41,142,161,213],"alternative.":[42],"As":[43],"these":[44],"are":[46,289],"invariant":[47],"cohort":[50],"composition":[51],"and":[52,82,94,120,126,159,192,202,259,264,274],"can":[53,62],"be":[54,64,74,83,154],"applied":[55],"in":[59,151,184,194],"isolation,":[60],"they":[61],"collectively":[63],"termed":[65],"single":[66],"predictors":[68,71],"(SSP).":[69],"Such":[70],"could":[72],"potentially":[73],"used":[75],"for":[76],"preprocessing-free":[77],"classification":[78,178,209],"of":[79,104,189],"new":[80,122,237],"samples":[81],"built":[84,131],"function":[86],"across":[87,156],"different":[88],"platforms":[90,158],"where":[91],"proper":[92],"batch":[93],"dataset":[95,238],"normalization":[96],"challenging.":[98],"Here,":[99],"we":[100],"evaluate":[101],"behavior":[103,193],"several":[105],"SSPs":[107,171,219],"based":[108],"binary":[110],"gene-pair":[111,268],"rules":[112],"(k-Top":[113],"Scoring":[114,200],"Pairs,":[115],"Absolute":[116],"Intrinsic":[117],"Molecular":[118],"Subtyping":[119],"Random":[123,203,270],"Forest":[124,204,271],"approach)":[125],"compare":[127],"them":[128],"centroids":[130],"with":[132,138,235],"centered":[133],"or":[134],"raw":[135],"values,":[137],"criteria":[140],"optimal":[143],"predictor":[144],"should":[145],"high":[147,208],"accuracy,":[148],"overcome":[149],"differences":[150],"purity,":[153],"robust":[155],"provide":[160],"informative":[162,214],"prediction":[163,185,215],"output":[164],"score.":[165,216],"RESULTS:":[166],"We":[167],"found":[168],"gene-pair-based":[170,218],"showed":[172],"excellent":[173],"performance":[174],"many":[176],"tasks.":[179],"The":[180,198],"three":[181],"differed":[183],"score":[186],"output,":[187],"handling":[188],"tied":[190],"scores":[191],"low":[195],"purity":[196],"k-Top":[199],"Pairs":[201,283],"approach":[205],"both":[206],"achieved":[207],"accuracy":[210],"while":[211],"providing":[212],"Although":[217],"touted":[222],"being":[224],"cross-platform":[225],"compatible":[226],"(through":[227],"training":[228],"mixed":[230],"platform":[231],"data),":[232],"out-of-the-box":[233],"compatibility":[234],"remains":[239],"potential":[241],"issue":[242],"warrants":[244],"cohort-to-cohort":[245],"verification.":[246],"AVAILABILITY":[247],"AND":[248],"IMPLEMENTATION:":[249],"Our":[250],"R":[251],"package":[252],"'multiclassPairs'":[253],"(https://cran.r-project.org/package=multiclassPairs)":[254],"(https://doi.org/10.1093/bioinformatics/btab088)":[255],"freely":[257],"available":[258,290],"enables":[260],"easy":[261],"training,":[262],"visualization":[265],"using":[266],"rule-based":[269],"SSP":[272],"method":[273],"provides":[275],"additional":[276],"functionalities":[278],"switchBox":[281],"k-Top-Scoring":[282],"package.":[284],"SUPPLEMENTARY":[285],"INFORMATION:":[286],"Supplementary":[287],"data":[288],"at":[291],"Bioinformatics":[292],"online.":[293]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":12}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
