{"id":"https://openalex.org/W3211487237","doi":"https://doi.org/10.1093/bioinformatics/btab784","title":"TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics","display_name":"TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics","publication_year":2021,"publication_date":"2021-11-15","ids":{"openalex":"https://openalex.org/W3211487237","doi":"https://doi.org/10.1093/bioinformatics/btab784","mag":"3211487237","pmid":"https://pubmed.ncbi.nlm.nih.gov/34792554"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab784","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1136/42319511/btab784.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1136/42319511/btab784.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036508362","display_name":"Jonathan Dhenin","orcid":"https://orcid.org/0000-0001-6615-2363"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jonathan Dhenin","raw_affiliation_strings":["Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France","Universit\u00e9 de Paris, Sorbonne Paris Cit\u00e9 , Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-6615-2363","affiliations":[{"raw_affiliation_string":"Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"]},{"raw_affiliation_string":"Universit\u00e9 de Paris, Sorbonne Paris Cit\u00e9 , Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011606492","display_name":"Diogo Borges Lima","orcid":"https://orcid.org/0000-0001-6056-0825"},"institutions":[{"id":"https://openalex.org/I4210099563","display_name":"Leibniz-Forschungsinstitut f\u00fcr Molekulare Pharmakologie","ror":"https://ror.org/010s54n03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099563"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Diogo Borges Lima","raw_affiliation_strings":["Leibniz-Forschungsinstitut f\u00fcr Molekulare Pharmakologie , Berlin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6056-0825","affiliations":[{"raw_affiliation_string":"Leibniz-Forschungsinstitut f\u00fcr Molekulare Pharmakologie , Berlin, Germany","institution_ids":["https://openalex.org/I4210099563"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023086946","display_name":"Mathieu Dupr\u00e9","orcid":"https://orcid.org/0000-0002-1845-0048"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathieu Dupr\u00e9","raw_affiliation_strings":["Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-1845-0048","affiliations":[{"raw_affiliation_string":"Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052238020","display_name":"Julia Chamot\u2010Rooke","orcid":"https://orcid.org/0000-0002-9427-543X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Julia Chamot-Rooke","raw_affiliation_strings":["Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-9427-543X","affiliations":[{"raw_affiliation_string":"Mass Spectrometry for Biology Unit, Institut Pasteur, Universit\u00e9 de Paris, CNRS USR2000, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052238020"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2836,"currency":"EUR","value_usd":3058},"fwci":0.2914,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48106518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"38","issue":"4","first_page":"1136","last_page":"1138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8601999878883362,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.8601999878883362,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.13179999589920044,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12166","display_name":"Ion-surface interactions and analysis","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7042916417121887},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6971452236175537},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5045474767684937},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44434037804603577},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3480989336967468},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.140462726354599},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0850309431552887}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7042916417121887},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6971452236175537},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5045474767684937},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44434037804603577},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3480989336967468},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.140462726354599},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0850309431552887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab784","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1136/42319511/btab784.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34792554","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34792554","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:zenodo.org:7602658","is_oa":true,"landing_page_url":"https://zenodo.org/record/7602658","pdf_url":"https://zenodo.org/record/7602658","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8796372","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8796372","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:pasteur-03441695v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-03441695","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2021, pp.btab784. &#x27E8;10.1093/bioinformatics/btab784&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab784","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab784","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1136/42319511/btab784.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2130030074","display_name":"European Proteomics Infrastructure Consortium providing Access","funder_award_id":"823839","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4101752260","display_name":"Next generation precision antibody profiling - from science fiction to reality","funder_award_id":"829157","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3211487237.pdf","grobid_xml":"https://content.openalex.org/works/W3211487237.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1977291445","https://openalex.org/W1983285663","https://openalex.org/W2100682149","https://openalex.org/W2170177203","https://openalex.org/W2790214985","https://openalex.org/W2808336234","https://openalex.org/W3046987053"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W1488408180","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3124914020","https://openalex.org/W2382290278","https://openalex.org/W2350741829"],"abstract_inverted_index":{"MOTIVATION:":[0],"We":[1,51],"present":[2],"a":[3,15,81],"new":[4],"software-tool":[5],"allowing":[6],"an":[7],"easy":[8],"visualization":[9],"of":[10,18,34,68,71],"fragment":[11,47],"ions":[12],"and":[13,46,84],"thus":[14,98],"rapid":[16],"evaluation":[17],"key":[19],"experimental":[20,59],"parameters":[21,61],"on":[22],"the":[23,28,58,66,101],"sequence":[24],"coverage":[25],"obtained":[26,42],"for":[27,90],"MS/MS":[29],"(tandem":[30],"mass":[31],"spectrometry)":[32],"analysis":[33],"intact":[35,69],"proteins.":[36],"Our":[37],"tool":[38],"can":[39,55],"process":[40],"data":[41,96,109],"from":[43,100],"various":[44,72],"deconvolution":[45],"assignment":[48],"software.":[49],"RESULTS:":[50],"demonstrate":[52],"that":[53,62],"TDFragMapper":[54],"rapidly":[56],"highlight":[57],"fragmentation":[60],"are":[63,87,97,110],"critical":[64],"to":[65],"characterization":[67],"proteins":[70],"size":[73],"using":[74],"top-down":[75],"proteomics.":[76],"AVAILABILITY":[77],"AND":[78],"IMPLEMENTATION:":[79],"TDFragMapper,":[80],"demonstration":[82],"video":[83],"user":[85],"tutorial":[86],"freely":[88],"available":[89,99,111],"academic":[91],"use":[92],"at":[93,112],"https://msbio.pasteur.fr/tdfragmapper;":[94],"all":[95],"ProteomeXchange":[102],"consortium":[103],"(identifier":[104],"PXD024643).":[105],"SUPPLEMENTARY":[106],"INFORMATION:":[107],"Supplementary":[108],"Bioinformatics":[113],"online.":[114]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
