{"id":"https://openalex.org/W4379600439","doi":"https://doi.org/10.1093/database/baad039","title":"IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2)","display_name":"IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2)","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4379600439","doi":"https://doi.org/10.1093/database/baad039","pmid":"https://pubmed.ncbi.nlm.nih.gov/37279783"},"language":"en","primary_location":{"id":"doi:10.1093/database/baad039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad039/50519292/baad039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad039/50519292/baad039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020107848","display_name":"Abhishek Khatri","orcid":"https://orcid.org/0000-0002-6299-056X"},"institutions":[{"id":"https://openalex.org/I4210128326","display_name":"Institute of Himalayan Bioresource Technology","ror":"https://ror.org/03xcn0p72","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210128326","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Abhishek Khatri","raw_affiliation_strings":["Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India","institution_ids":["https://openalex.org/I4210128326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101213729","display_name":"Aman Thakur","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128326","display_name":"Institute of Himalayan Bioresource Technology","ror":"https://ror.org/03xcn0p72","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210128326","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aman Thakur","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India","institution_ids":["https://openalex.org/I4210128326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047399749","display_name":"Ayush Lepcha","orcid":"https://orcid.org/0000-0001-6363-8819"},"institutions":[{"id":"https://openalex.org/I4210128326","display_name":"Institute of Himalayan Bioresource Technology","ror":"https://ror.org/03xcn0p72","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210128326","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ayush Lepcha","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India","institution_ids":["https://openalex.org/I4210128326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045990750","display_name":"Vishal Acharya","orcid":"https://orcid.org/0000-0003-2175-9799"},"institutions":[{"id":"https://openalex.org/I4210128326","display_name":"Institute of Himalayan Bioresource Technology","ror":"https://ror.org/03xcn0p72","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210128326","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vishal Acharya","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India","institution_ids":["https://openalex.org/I4210128326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089849993","display_name":"Rakshak Kumar","orcid":"https://orcid.org/0000-0002-6982-2454"},"institutions":[{"id":"https://openalex.org/I4210128326","display_name":"Institute of Himalayan Bioresource Technology","ror":"https://ror.org/03xcn0p72","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210128326","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Rakshak Kumar","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India"],"raw_orcid":"https://orcid.org/0000-0002-6982-2454","affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology , Palampur, Himachal Pradesh 176061, India","institution_ids":["https://openalex.org/I4210128326"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089849993"],"corresponding_institution_ids":["https://openalex.org/I4210128326","https://openalex.org/I99364266"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.1856,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.45141909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"2023","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7718604803085327},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.7236080169677734},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6825276613235474},{"id":"https://openalex.org/keywords/16s-ribosomal-rna","display_name":"16S ribosomal RNA","score":0.5391945838928223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4447861313819885},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42484235763549805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.386523962020874},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3584267497062683},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34707170724868774},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32151180505752563},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.16914102435112},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11688688397407532},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.11637723445892334},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.09955200552940369},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08967497944831848}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7718604803085327},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.7236080169677734},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6825276613235474},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.5391945838928223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4447861313819885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42484235763549805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.386523962020874},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3584267497062683},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34707170724868774},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32151180505752563},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.16914102435112},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11688688397407532},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.11637723445892334},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.09955200552940369},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08967497944831848},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/baad039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad039/50519292/baad039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:37279783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37279783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10243898","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10243898","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10243898/pdf/baad039.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baad039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baad039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baad039/50519292/baad039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3047277430","display_name":null,"funder_award_id":"3/1/2","funder_id":"https://openalex.org/F4320320720","funder_display_name":"Indian Council of Medical Research"}],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320320720","display_name":"Indian Council of Medical Research","ror":"https://ror.org/0492wrx28"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4379600439.pdf"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2036897871","https://openalex.org/W2069666772","https://openalex.org/W2097750439","https://openalex.org/W2765730173","https://openalex.org/W2766749118","https://openalex.org/W2775281841","https://openalex.org/W2909472692","https://openalex.org/W2963276645","https://openalex.org/W3011372919","https://openalex.org/W3037671057","https://openalex.org/W3097052362","https://openalex.org/W3129297913","https://openalex.org/W3139306529","https://openalex.org/W3179960659","https://openalex.org/W3204969735","https://openalex.org/W4200063439","https://openalex.org/W4200282970","https://openalex.org/W4282924112","https://openalex.org/W4285092447","https://openalex.org/W4304775287","https://openalex.org/W6839456466"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W3044162010"],"abstract_inverted_index":{"Indian":[0,26],"Himalayan":[1,27],"metagenome":[2],"database":[3,8,121],"(IHM-DB)":[4],"is":[5,134],"a":[6],"web-based":[7],"consisting":[9],"of":[10,130],"information":[11,41,76],"on":[12],"metagenomic":[13,65],"datasets":[14],"from":[15,24,67],"various":[16],"databases":[17],"and":[18,96,113,116,141],"publications":[19,66],"that":[20],"are":[21],"specifically":[22],"reported":[23],"the":[25,39,43,50,60,64,68,78,94,118,131],"Region":[28],"(IHR).":[29],"The":[30,53,127],"online":[31],"interface":[32],"allows":[33,90],"users":[34,61,91],"to":[35,49,62,77,92],"view":[36],"or":[37,47],"download":[38],"dataset-specific":[40],"for":[42,59,105,124],"respective":[44],"states,":[45],"category-wise,":[46],"according":[48],"hypervariable":[51],"region.":[52],"IHM-DB":[54],"also":[55],"provides":[56,101],"an":[57,81,102],"opportunity":[58],"access":[63],"IHR":[69],"as":[70,72,109],"well":[71],"upload":[73],"their":[74],"microbiome":[75],"website.":[79],"Additionally,":[80],"open-source":[82],"16S":[83],"rRNA":[84],"amplicon-based":[85],"automated":[86,103],"bioinformatics":[87],"pipeline,":[88],"AutoQii2,":[89],"analyze":[93],"single-end":[95],"paired-end":[97],"raw":[98],"reads.":[99],"AutoQii2":[100,132],"approach":[104],"performing":[106],"analysis":[107],"such":[108],"quality":[110],"check,":[111],"adapter":[112],"chimera":[114],"removal":[115],"exploits":[117],"latest":[119],"ribosomal":[120],"project":[122],"classifier":[123],"taxonomic":[125],"assignments.":[126],"source":[128],"code":[129],"pipeline":[133],"available":[135],"at":[136],"https://gitlab.com/khatriabhi2319/autoqii2.":[137],"Database":[138],"URL":[139],"https://ham.ihbt.res.in/ihmdb":[140],"https://fgcsl.ihbt.res.in/ihmdb.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
