{"id":"https://openalex.org/W2136292095","doi":"https://doi.org/10.1093/nar/gkn304","title":"RSAT: regulatory sequence analysis tools","display_name":"RSAT: regulatory sequence analysis tools","publication_year":2008,"publication_date":"2008-05-19","ids":{"openalex":"https://openalex.org/W2136292095","doi":"https://doi.org/10.1093/nar/gkn304","mag":"2136292095","pmid":"https://pubmed.ncbi.nlm.nih.gov/18495751"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkn304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn304","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkn304","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065934968","display_name":"Morgane Thomas\u2010Chollier","orcid":"https://orcid.org/0000-0003-2608-476X"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"M. Thomas-Chollier","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263. Bld du Triomphe, B-1050 Bruxelles, Belgium","Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263. Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]},{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058216043","display_name":"Olivier Sand","orcid":"https://orcid.org/0000-0003-1465-1640"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"O. Sand","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108189338","display_name":"J.-V. Turatsinze","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"J.-V. Turatsinze","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054447627","display_name":"Rekin\u2019s Janky","orcid":"https://orcid.org/0000-0001-5135-2469"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"R. Janky","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067483013","display_name":"Matthieu Defrance","orcid":"https://orcid.org/0000-0002-3090-3142"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"M. Defrance","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107791710","display_name":"E. Vervisch","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"E. Vervisch","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108093533","display_name":"S. Broh\u00e9e","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"S. Brohee","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056821549","display_name":"Jacques van Helden","orcid":"https://orcid.org/0000-0002-8799-8584"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"J. van Helden","raw_affiliation_strings":["Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium","institution_ids":["https://openalex.org/I132053463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I132053463"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":13.9108,"has_fulltext":false,"cited_by_count":278,"citation_normalized_percentile":{"value":0.99377487,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"36","issue":"Web Server","first_page":"W119","last_page":"W127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5544273257255554},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5169607996940613},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4945349395275116},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49096205830574036},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4551515579223633},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4439815580844879},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.439090758562088},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4264181852340698},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3565855920314789},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3127537965774536},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.154770165681839},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13574713468551636},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10860335826873779}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5544273257255554},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5169607996940613},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4945349395275116},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49096205830574036},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4551515579223633},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4439815580844879},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.439090758562088},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4264181852340698},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3565855920314789},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3127537965774536},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.154770165681839},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13574713468551636},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10860335826873779},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkn304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn304","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18495751","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18495751","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2447775","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2447775","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01624302v1","is_oa":true,"landing_page_url":"https://amu.hal.science/hal-01624302","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2008, 36, pp.W119--W127. &#x27E8;10.1093/nar/gkn304&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/134340","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/134340","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, 36 (Web Server issue","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.mpg.de:item_1583460","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0010-792A-C","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkn304","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkn304","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321454","display_name":"Belgian Federal Science Policy Office","ror":"https://ror.org/01fapfv42"},{"id":"https://openalex.org/F4320322634","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04"},{"id":"https://openalex.org/F4320334840","display_name":"Fonds pour la Formation \u00e0 la Recherche dans l\u2019Industrie et dans l\u2019Agriculture","ror":"https://ror.org/03q83t159"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W73887164","https://openalex.org/W850008768","https://openalex.org/W1214546200","https://openalex.org/W1975924111","https://openalex.org/W2003967338","https://openalex.org/W2032231928","https://openalex.org/W2071952037","https://openalex.org/W2072152345","https://openalex.org/W2072517037","https://openalex.org/W2073850887","https://openalex.org/W2097396311","https://openalex.org/W2106542976","https://openalex.org/W2110455321","https://openalex.org/W2113833510","https://openalex.org/W2116628377","https://openalex.org/W2116672274","https://openalex.org/W2117549173","https://openalex.org/W2119867444","https://openalex.org/W2123490534","https://openalex.org/W2124281279","https://openalex.org/W2137653635","https://openalex.org/W2142946358","https://openalex.org/W2145091349","https://openalex.org/W2145295592","https://openalex.org/W2146368849","https://openalex.org/W2147055980","https://openalex.org/W2150612336","https://openalex.org/W2155340806","https://openalex.org/W2157485293","https://openalex.org/W2158314946","https://openalex.org/W2158714788","https://openalex.org/W2158962723","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W1511772879","https://openalex.org/W4379115841","https://openalex.org/W4200340037","https://openalex.org/W608917066","https://openalex.org/W4283652261","https://openalex.org/W585424826","https://openalex.org/W564602992"],"abstract_inverted_index":{"The":[0,28,113],"regulatory":[1],"sequence":[2,33],"analysis":[3],"tools":[4,18,76,86,137,170],"(RSAT,":[5],"http://rsat.ulb.ac.be/rsat/)":[6],"is":[7],"a":[8,13,64,83],"software":[9],"suite":[10,29],"that":[11,104],"integrates":[12],"wide":[14],"collection":[15],"of":[16,22,66,85,90,102,177],"modular":[17],"for":[19,32,87],"the":[20,72,131,136,169,182],"detection":[21,89],"cis-regulatory":[23],"elements":[24],"in":[25,108,147],"genome":[26,42,156],"sequences.":[27],"includes":[30],"programs":[31],"retrieval,":[34],"pattern":[35,40],"discovery,":[36],"phylogenetic":[37],"footprint":[38],"detection,":[39],"matching,":[41],"scanning":[43,111],"and":[44,78,159,161,192],"feature":[45],"map":[46],"drawing.":[47],"Random":[48],"controls":[49],"can":[50,123],"be":[51,124],"performed":[52],"with":[53,93,187],"random":[54,60],"gene":[55],"selections":[56],"or":[57,128],"by":[58,174],"generating":[59],"sequences":[61],"according":[62],"to":[63,130],"variety":[65],"background":[67,98],"models":[68],"(Bernoulli,":[69],"Markov).":[70],"Beyond":[71],"original":[73,95],"word-based":[74],"pattern-discovery":[75],"(oligo-analysis":[77],"dyad-analysis),":[79],"we":[80],"recently":[81],"added":[82],"battery":[84],"matrix-based":[88,110],"cis-acting":[91],"elements,":[92],"some":[94],"features":[96],"(adaptive":[97],"models,":[99],"Markov-chain":[100],"estimation":[101],"P-values)":[103],"do":[105],"not":[106],"exist":[107],"other":[109,132],"tools.":[112,133],"web":[114,142],"server":[115],"offers":[116],"an":[117],"intuitive":[118],"interface,":[119],"where":[120],"each":[121],"program":[122],"accessed":[125],"either":[126],"separately":[127],"connected":[129],"In":[134],"addition,":[135],"are":[138,151,164],"now":[139],"available":[140],"as":[141],"services,":[143],"enabling":[144],"their":[145],"integration":[146],"programmatic":[148],"workflows.":[149],"Genomes":[150],"regularly":[152],"updated":[153],"from":[154,179],"various":[155],"repositories":[157],"(NCBI":[158],"EnsEMBL)":[160],"682":[162],"organisms":[163],"currently":[165],"supported.":[166],"Since":[167],"1998,":[168],"have":[171],"been":[172],"used":[173],"several":[175],"hundreds":[176],"researchers":[178],"all":[180],"over":[181],"world.":[183],"Several":[184],"predictions":[185],"made":[186],"RSAT":[188],"were":[189],"validated":[190],"experimentally":[191],"published.":[193]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":36}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
