{"id":"https://openalex.org/W2126072631","doi":"https://doi.org/10.1093/database/bas001","title":"CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations","display_name":"CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2126072631","doi":"https://doi.org/10.1093/database/bas001","mag":"2126072631","pmid":"https://pubmed.ncbi.nlm.nih.gov/22434836"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas001/16728543/bas001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas001/16728543/bas001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032700223","display_name":"Julie Park","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Julie Park","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009147827","display_name":"Maria C. Costanzo","orcid":"https://orcid.org/0000-0001-9043-693X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria C. Costanzo","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056119656","display_name":"Rama Balakrishnan","orcid":"https://orcid.org/0000-0003-2468-9933"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rama Balakrishnan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058567429","display_name":"J. Michael Cherry","orcid":"https://orcid.org/0000-0001-9163-5180"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Michael Cherry","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032016778","display_name":"Eurie L. Hong","orcid":"https://orcid.org/0000-0002-1775-4998"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eurie L. Hong","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5032700223"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.8052,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.7194106,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2012","issue":null,"first_page":"bas001","last_page":"bas001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7968329191207886},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.7285465002059937},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7029268741607666},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.6741818189620972},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5907169580459595},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5512068867683411},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.534163773059845},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5182792544364929},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4574335217475891},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.42572319507598877},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3384981155395508},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32773470878601074},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2704717516899109},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22881990671157837},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10528546571731567}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7968329191207886},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.7285465002059937},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7029268741607666},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.6741818189620972},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5907169580459595},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5512068867683411},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.534163773059845},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5182792544364929},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4574335217475891},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.42572319507598877},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3384981155395508},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32773470878601074},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2704717516899109},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22881990671157837},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10528546571731567},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas001/16728543/bas001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:22434836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22434836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3308158","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3308158","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas001/16728543/bas001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G5004258832","display_name":null,"funder_award_id":"HG001315","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5860850044","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6414905909","display_name":null,"funder_award_id":"HG0022","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G839285823","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126072631.pdf","grobid_xml":"https://content.openalex.org/works/W2126072631.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1236321187","https://openalex.org/W1597538863","https://openalex.org/W1968537328","https://openalex.org/W1973712872","https://openalex.org/W1993119069","https://openalex.org/W2023805910","https://openalex.org/W2042493200","https://openalex.org/W2045729458","https://openalex.org/W2048623398","https://openalex.org/W2091978351","https://openalex.org/W2095956310","https://openalex.org/W2096939566","https://openalex.org/W2101674614","https://openalex.org/W2102221598","https://openalex.org/W2102812693","https://openalex.org/W2103017472","https://openalex.org/W2110857277","https://openalex.org/W2116423958","https://openalex.org/W2117663476","https://openalex.org/W2120423098","https://openalex.org/W2124320575","https://openalex.org/W2130253098","https://openalex.org/W2146486983","https://openalex.org/W2147461734","https://openalex.org/W2148130205","https://openalex.org/W2150261709","https://openalex.org/W2152871646","https://openalex.org/W2157611936","https://openalex.org/W2171815113","https://openalex.org/W2525259537","https://openalex.org/W4246066782"],"related_works":["https://openalex.org/W2376314740","https://openalex.org/W1584628001","https://openalex.org/W2393185060","https://openalex.org/W2120460904","https://openalex.org/W2036641180","https://openalex.org/W2046177308","https://openalex.org/W170487852","https://openalex.org/W2347278957","https://openalex.org/W2106813246","https://openalex.org/W2140593394"],"abstract_inverted_index":{"The":[0],"set":[1],"of":[2,15,45,58,72,79,134,138,166,175,209,259],"annotations":[3,47,81,88,125,143,157],"at":[4,85],"the":[5,12,42,75,99,117,164,167,207,257,267],"Saccharomyces":[6],"Genome":[7],"Database":[8],"(SGD)":[9],"that":[10,106,179,185,204,222,231,265],"classifies":[11],"cellular":[13],"function":[14],"S.":[16],"cerevisiae":[17],"gene":[18,63,214],"products":[19],"using":[20],"Gene":[21],"Ontology":[22],"(GO)":[23],"terms":[24,169],"has":[25],"become":[26],"an":[27,190],"important":[28,191],"resource":[29],"for":[30,49,173,243,269],"facilitating":[31],"experimental":[32,40,96],"analysis.":[33],"In":[34],"addition":[35],"to":[36,66,69,110,196,216,252,262],"capturing":[37],"and":[38,77,121,128,162,256],"summarizing":[39],"results,":[41],"structured":[43],"nature":[44],"GO":[46,87,124,152,156,160,268],"allows":[48],"functional":[50,59,112],"comparison":[51,133],"across":[52],"organisms":[53],"as":[54,56],"well":[55],"propagation":[57],"predictions":[60,161],"between":[61,119],"related":[62],"products.":[64],"Due":[65],"their":[67],"relevance":[68],"many":[70],"areas":[71],"research,":[73],"ensuring":[74],"accuracy":[76],"quality":[78],"these":[80,135,244],"is":[82],"a":[83,130],"priority":[84],"SGD.":[86],"are":[89,223,233],"assigned":[90],"either":[91],"manually,":[92],"by":[93,238],"biocurators":[94],"extracting":[95],"evidence":[97],"from":[98],"scientific":[100],"literature,":[101],"or":[102],"through":[103],"automated":[104],"methods":[105],"leverage":[107],"computational":[108,159],"algorithms":[109],"predict":[111],"information.":[113],"Here,":[114],"we":[115,201,248],"discuss":[116,249],"relationship":[118,165],"literature-based":[120,155],"computationally":[122],"predicted":[123],"in":[126,211,218],"SGD":[127],"extend":[129],"strategy":[131],"whereby":[132],"two":[136,168],"types":[137],"annotation":[139,187],"identifies":[140],"genes":[141,184,221],"whose":[142],"need":[144],"review.":[145,199],"Our":[146],"method,":[147],"CvManGO":[148,210],"(Computational":[149],"versus":[150],"Manual":[151],"annotations),":[153],"pairs":[154],"with":[158],"evaluates":[163],"within":[170],"GO,":[171],"looking":[172],"instances":[174],"discrepancy.":[176],"We":[177],"found":[178,230],"this":[180,254,260],"method":[181,261],"will":[182],"identify":[183],"require":[186],"updates,":[188],"taking":[189],"step":[192],"towards":[193],"finding":[194],"ways":[195,251],"prioritize":[197],"literature":[198],"Additionally,":[200],"explored":[202],"factors":[203],"may":[205],"influence":[206],"effectiveness":[208],"identifying":[212],"relevant":[213],"targets":[215],"find":[217],"particular":[219],"those":[220],"missing":[224],"literature-supported":[225],"annotations,":[226],"but":[227],"our":[228],"survey":[229],"there":[232],"no":[234],"immediately":[235],"identifiable":[236],"criteria":[237],"which":[239],"one":[240],"could":[241],"enrich":[242],"under-annotated":[245],"genes.":[246],"Finally,":[247],"possible":[250],"improve":[253],"strategy,":[255],"applicability":[258],"other":[263],"projects":[264],"use":[266],"curation.":[270],"DATABASE":[271],"URL:":[272],"http://www.yeastgenome.org.":[273]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
