{"id":"https://openalex.org/W2143625941","doi":"https://doi.org/10.1109/cisis.2011.88","title":"An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures","display_name":"An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures","publication_year":2011,"publication_date":"2011-06-01","ids":{"openalex":"https://openalex.org/W2143625941","doi":"https://doi.org/10.1109/cisis.2011.88","mag":"2143625941"},"language":"en","primary_location":{"id":"doi:10.1109/cisis.2011.88","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisis.2011.88","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 International Conference on Complex, Intelligent, and Software Intensive Systems","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628812","display_name":"Tomoya Mori","orcid":"https://orcid.org/0000-0003-3483-0056"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomoya Mori","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041203895","display_name":"Takeyuki Tamura","orcid":"https://orcid.org/0000-0003-1596-901X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeyuki Tamura","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009391489","display_name":"Daiji Fukagawa","orcid":null},"institutions":[{"id":"https://openalex.org/I133984924","display_name":"Doshisha University","ror":"https://ror.org/01fxdkm29","country_code":"JP","type":"education","lineage":["https://openalex.org/I133984924"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daiji Fukagawa","raw_affiliation_strings":["Faculty of Culture and Information Science, Doshisha University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Culture and Information Science, Doshisha University, Kyoto, Japan","institution_ids":["https://openalex.org/I133984924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087434029","display_name":"Atsuhiro Takasu","orcid":"https://orcid.org/0000-0002-9061-7949"},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Atsuhiro Takasu","raw_affiliation_strings":["National Institute of Information, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Information, Tokyo, Japan","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102321735","display_name":"Etsuji Tomita","orcid":null},"institutions":[{"id":"https://openalex.org/I20529979","display_name":"University of Electro-Communications","ror":"https://ror.org/02x73b849","country_code":"JP","type":"education","lineage":["https://openalex.org/I20529979"]},{"id":"https://openalex.org/I96679780","display_name":"Chuo University","ror":"https://ror.org/03qvqb743","country_code":"JP","type":"education","lineage":["https://openalex.org/I96679780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Etsuji Tomita","raw_affiliation_strings":["Research and Development Initiative, Chuo University, Tokyo, Japan","University of Electro-Communications, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research and Development Initiative, Chuo University, Tokyo, Japan","institution_ids":["https://openalex.org/I96679780"]},{"raw_affiliation_string":"University of Electro-Communications, Tokyo, Japan","institution_ids":["https://openalex.org/I20529979"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":10.5821,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.98517996,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"536","last_page":"540"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clique-problem","display_name":"Clique problem","score":0.7976821660995483},{"id":"https://openalex.org/keywords/clique","display_name":"Clique","score":0.6818703413009644},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.6558846235275269},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.5713055729866028},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5154379606246948},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.49384409189224243},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45743873715400696},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.45683926343917847},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4447581171989441},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4303273558616638},{"id":"https://openalex.org/keywords/search-tree","display_name":"Search tree","score":0.4187765419483185},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3648359179496765},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.23991915583610535},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.15702584385871887},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.14647111296653748},{"id":"https://openalex.org/keywords/chordal-graph","display_name":"Chordal graph","score":0.06448918581008911}],"concepts":[{"id":"https://openalex.org/C150997102","wikidata":"https://www.wikidata.org/wiki/Q1196873","display_name":"Clique problem","level":5,"score":0.7976821660995483},{"id":"https://openalex.org/C2777035058","wikidata":"https://www.wikidata.org/wiki/Q1662634","display_name":"Clique","level":2,"score":0.6818703413009644},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.6558846235275269},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.5713055729866028},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5154379606246948},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.49384409189224243},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45743873715400696},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.45683926343917847},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4447581171989441},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4303273558616638},{"id":"https://openalex.org/C207024777","wikidata":"https://www.wikidata.org/wiki/Q621673","display_name":"Search tree","level":3,"score":0.4187765419483185},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3648359179496765},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.23991915583610535},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.15702584385871887},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.14647111296653748},{"id":"https://openalex.org/C160446614","wikidata":"https://www.wikidata.org/wiki/Q1322892","display_name":"Chordal graph","level":3,"score":0.06448918581008911},{"id":"https://openalex.org/C102192266","wikidata":"https://www.wikidata.org/wiki/Q4545823","display_name":"1-planar graph","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cisis.2011.88","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisis.2011.88","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 International Conference on Complex, Intelligent, and Software Intensive Systems","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1572019214","https://openalex.org/W1594785451","https://openalex.org/W1975009259","https://openalex.org/W1978478796","https://openalex.org/W2008288996","https://openalex.org/W2030893619","https://openalex.org/W2042498858","https://openalex.org/W2057294899","https://openalex.org/W2062691914","https://openalex.org/W2064168756","https://openalex.org/W2090070826","https://openalex.org/W2100505346","https://openalex.org/W2118782734","https://openalex.org/W2138453342","https://openalex.org/W2171437346","https://openalex.org/W2171643895","https://openalex.org/W2575049328"],"related_works":["https://openalex.org/W2165678151","https://openalex.org/W1796509207","https://openalex.org/W2082603400","https://openalex.org/W3203939381","https://openalex.org/W2140498717","https://openalex.org/W2500614220","https://openalex.org/W858234464","https://openalex.org/W2162082186","https://openalex.org/W2005991213","https://openalex.org/W2042498858"],"abstract_inverted_index":{"The":[0],"tree":[1,15,39,67,79],"edit":[2,40,68,80],"distance":[3,41,69,81],"is":[4,35,43,50,83,101,120],"one":[5],"of":[6,14,24,77,88,130,148,158],"the":[7,38,66,78,89,117,131,146,149],"most":[8,169],"widely":[9],"used":[10,21],"measures":[11],"for":[12,22,45,54,64],"comparison":[13,157],"structured":[16],"data":[17],"and":[18,30,95],"has":[19],"been":[20],"analysis":[23],"RNA":[25],"secondary":[26],"structures,":[27,29,161],"glycan":[28,160],"vascular":[31],"trees.":[32,56],"However,":[33],"it":[34,49],"known":[36],"that":[37,126],"problem":[42,82,94,136],"NP-hard":[44],"unordered":[46,71],"trees":[47,72],"while":[48],"polynomial":[51],"time":[52],"solvable":[53],"ordered":[55],"We":[57],"have":[58],"recently":[59],"proposed":[60],"a":[61,122],"clique-based":[62,110],"method":[63,119,164],"computing":[65],"between":[70],"in":[73,168],"which":[74,142],"each":[75],"instance":[76,87],"transformed":[84],"into":[85],"an":[86,97,108],"maximum":[90,132],"vertex":[91,133],"weighted":[92,134],"clique":[93,99,135],"then":[96],"existing":[98],"algorithm":[100,125],"applied.":[102],"In":[103],"this":[104],"paper,":[105],"we":[106],"propose":[107],"improved":[109,118,163],"method.":[111],"Different":[112],"from":[113],"our":[114,162],"previous":[115],"method,":[116],"basically":[121],"dynamic":[123],"programming":[124],"repeatedly":[127],"solves":[128],"instances":[129],"as":[137],"sub-problems.":[138],"Other":[139],"heuristic":[140],"techniques,":[141],"do":[143],"not":[144],"violate":[145],"optimality":[147],"solution,":[150],"are":[151],"also":[152],"introduced.":[153],"When":[154],"applied":[155],"to":[156],"large":[159],"showed":[165],"significant":[166],"speed-up":[167],"cases.":[170]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
