{"id":"https://openalex.org/W2112935370","doi":"https://doi.org/10.1109/dexa.2006.20","title":"A Tool for Collaborative Construction of Large Biological Ontologies","display_name":"A Tool for Collaborative Construction of Large Biological Ontologies","publication_year":2006,"publication_date":"2006-10-24","ids":{"openalex":"https://openalex.org/W2112935370","doi":"https://doi.org/10.1109/dexa.2006.20","mag":"2112935370"},"language":"en","primary_location":{"id":"doi:10.1109/dexa.2006.20","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2006.20","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"17th International Conference on Database and Expert Systems Applications (DEXA'06)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060363706","display_name":"Jie Bao","orcid":"https://orcid.org/0000-0002-5642-1993"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Bao","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","Iowa State Univ., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","institution_ids":[]},{"raw_affiliation_string":"Iowa State Univ., USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075065037","display_name":"Zhi\u2010Liang Hu","orcid":"https://orcid.org/0000-0002-6704-7538"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiliang Hu","raw_affiliation_strings":["Department of Animal Science, Iowa State University, Ames, IA, USA","Iowa State Univ., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State Univ., USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067341711","display_name":"Doina Caragea","orcid":"https://orcid.org/0000-0002-6440-0914"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Caragea","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","Iowa State Univ., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","institution_ids":[]},{"raw_affiliation_string":"Iowa State Univ., USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037000551","display_name":"James M. Reecy","orcid":"https://orcid.org/0000-0003-4602-0990"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Reecy","raw_affiliation_strings":["Department of Animal Science, Iowa State University, Ames, IA, USA","Iowa State Univ., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State Univ., USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004737962","display_name":"Vasant Honavar","orcid":"https://orcid.org/0000-0001-5399-3489"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V.G. Honavar","raw_affiliation_strings":["Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","Iowa State Univ., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Laboratory, Department of Computer Science, Center for Computational Intelligence","institution_ids":[]},{"raw_affiliation_string":"Iowa State Univ., USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":6.6694,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.9674821,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"191","last_page":"195"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6838942766189575},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3707726001739502}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6838942766189575},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3707726001739502}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/dexa.2006.20","is_oa":false,"landing_page_url":"https://doi.org/10.1109/dexa.2006.20","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"17th International Conference on Database and Expert Systems Applications (DEXA'06)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.147.872","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.147.872","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.cis.ksu.edu/~dcaragea/papers/bao-bidm-2006.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.73.5219","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.73.5219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.iastate.edu/~honavar/Papers/BaoBIDM2006.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W207792691","https://openalex.org/W2004365372","https://openalex.org/W2061282752","https://openalex.org/W2102033455","https://openalex.org/W2112479620","https://openalex.org/W4285719527","https://openalex.org/W4322574978","https://openalex.org/W6608422882"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"In":[0],"order":[1,94],"for":[2,41,117],"ontologies":[3,30,81,115],"to":[4,8,14,85],"be":[5],"broadly":[6],"useful":[7],"the":[9,26,58,77,110,114],"scientific":[10],"community,":[11],"they":[12],"need":[13],"capture":[15],"knowledge":[16],"and":[17,22,89,103,120],"expertise":[18],"of":[19,28,60,79,92,107,112,124],"multiple":[20],"experts":[21,36],"research":[23,38],"groups.":[24,39],"Consequently,":[25],"construction":[27],"such":[29,42],"necessarily":[31],"requires":[32],"collaboration":[33,43],"among":[34],"individual":[35],"or":[37],"Support":[40],"is":[44],"largely":[45],"lacking":[46],"in":[47,109],"existing":[48],"ontology":[49,63,70,83],"development":[50,59,64],"environments.":[51],"We":[52],"describe":[53,68],"some":[54],"initial":[55],"steps":[56],"towards":[57],"a":[61],"collaborative":[62,90],"environment.":[65],"Specifically,":[66],"we":[67],"an":[69],"editing":[71,91],"tool":[72],"COB":[73,98],"Editor":[74,99],"which":[75],"exploits":[76],"notion":[78],"modular":[80],"(or":[82],"packages)":[84],"support":[86],"sharing,":[87],"reuse,":[88],"partial":[93],"(i.e.,":[95],"DAG-structured)":[96],"ontologies.":[97],"can":[100],"engage":[101],"diverse":[102,122],"relatively":[104],"autonomous":[105],"communities":[106],"biologists":[108],"process":[111],"creating":[113],"needed":[116],"annotating,":[118],"integrating,":[119],"analyzing":[121],"sources":[123],"\u2019omics\u2019":[125],"data.":[126]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
