{"id":"https://openalex.org/W2071395250","doi":"https://doi.org/10.1109/mc.2002.1016900","title":"The emerging landscape of bioinformatics software systems","display_name":"The emerging landscape of bioinformatics software systems","publication_year":2002,"publication_date":"2002-07-01","ids":{"openalex":"https://openalex.org/W2071395250","doi":"https://doi.org/10.1109/mc.2002.1016900","mag":"2071395250"},"language":"en","primary_location":{"id":"doi:10.1109/mc.2002.1016900","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mc.2002.1016900","pdf_url":null,"source":{"id":"https://openalex.org/S178916657","display_name":"Computer","issn_l":"0018-9162","issn":["0018-9162","1558-0814"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L.S. Heath","raw_affiliation_strings":["Virginia Tech","[Department of Computer Science, Virginia Technology, Blacksburg, VA, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"[Department of Computer Science, Virginia Technology, Blacksburg, VA, USA]","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035052603","display_name":"Naren Ramakrishnan","orcid":"https://orcid.org/0000-0002-1821-9743"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Ramakrishnan","raw_affiliation_strings":["Virginia Tech","[Department of Computer Science, Virginia Technology, Blacksburg, VA, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"[Department of Computer Science, Virginia Technology, Blacksburg, VA, USA]","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":1.3742,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.80175102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"7","first_page":"41","last_page":"45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7851155996322632},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6472527384757996},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6162331104278564},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6117278933525085},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5004429817199707},{"id":"https://openalex.org/keywords/software-analytics","display_name":"Software analytics","score":0.4729204773902893},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.42609208822250366},{"id":"https://openalex.org/keywords/closing","display_name":"Closing (real estate)","score":0.4194129407405853},{"id":"https://openalex.org/keywords/software-system","display_name":"Software system","score":0.3993581533432007},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.3449910879135132},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32703477144241333},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32398220896720886},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.2531178593635559}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7851155996322632},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6472527384757996},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6162331104278564},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6117278933525085},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5004429817199707},{"id":"https://openalex.org/C171981572","wikidata":"https://www.wikidata.org/wiki/Q7554239","display_name":"Software analytics","level":5,"score":0.4729204773902893},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.42609208822250366},{"id":"https://openalex.org/C2778775528","wikidata":"https://www.wikidata.org/wiki/Q5135432","display_name":"Closing (real estate)","level":2,"score":0.4194129407405853},{"id":"https://openalex.org/C149091818","wikidata":"https://www.wikidata.org/wiki/Q2429814","display_name":"Software system","level":3,"score":0.3993581533432007},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.3449910879135132},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32703477144241333},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32398220896720886},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.2531178593635559},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/mc.2002.1016900","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mc.2002.1016900","pdf_url":null,"source":{"id":"https://openalex.org/S178916657","display_name":"Computer","issn_l":"0018-9162","issn":["0018-9162","1558-0814"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.5299999713897705,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1486453207","https://openalex.org/W1981309637","https://openalex.org/W2086590865","https://openalex.org/W2113024448","https://openalex.org/W2166865790","https://openalex.org/W4253880200"],"related_works":["https://openalex.org/W4288754496","https://openalex.org/W1574055964","https://openalex.org/W2323909273","https://openalex.org/W2953976309","https://openalex.org/W3162943795","https://openalex.org/W4283656801","https://openalex.org/W2134678736","https://openalex.org/W3209087738","https://openalex.org/W2115070704","https://openalex.org/W4211114646"],"abstract_inverted_index":{"Fusing":[0],"computing":[1],"and":[2,13,27,54,58,68,70],"biology":[3],"expertise,":[4],"bioinformatics":[5,34],"software":[6,35],"provides":[7],"a":[8],"powerful":[9],"tool":[10],"for":[11],"organizing":[12],"mining":[14],"the":[15,46,72],"vast":[16],"amounts":[17],"of":[18,48],"data":[19,51,64],"genetics":[20],"researchers":[21],"are":[22],"accumulating.":[23],"As":[24],"life":[25],"scientists":[26,29],"computational":[28,56],"interact":[30],"to":[31],"create":[32],"useful":[33],"systems,":[36],"several":[37],"themes":[38],"or":[39],"lessons":[40],"recur.":[41],"We":[42],"identify":[43],"seven":[44],"themes:":[45],"nature":[47],"biological":[49],"data;":[50],"storage,":[52],"analysis":[53],"retrieval;":[55],"modeling":[57],"simulation;":[59],"biologically":[60],"meaningful":[61],"information":[62],"integration;":[63],"mining;":[65],"image":[66],"processing":[67],"visualization;":[69],"closing":[71],"loop.":[73]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
