{"id":"https://openalex.org/W2276356438","doi":"https://doi.org/10.1109/tcbb.2016.2522421","title":"RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots","display_name":"RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots","publication_year":2016,"publication_date":"2016-02-19","ids":{"openalex":"https://openalex.org/W2276356438","doi":"https://doi.org/10.1109/tcbb.2016.2522421","mag":"2276356438","pmid":"https://pubmed.ncbi.nlm.nih.gov/26915129"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2016.2522421","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2522421","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026395089","display_name":"Boris Shabash","orcid":"https://orcid.org/0000-0002-3359-5915"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Boris Shabash","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC","\u2020 School of Computing Science, Simon Fraser University, Burnaby, BC"],"raw_orcid":"https://orcid.org/0000-0002-3359-5915","affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"\u2020 School of Computing Science, Simon Fraser University, Burnaby, BC","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049270004","display_name":"Kay C. Wiese","orcid":"https://orcid.org/0000-0003-4507-1892"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kay C. Wiese","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC","\u2020 School of Computing Science, Simon Fraser University, Burnaby, BC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"\u2020 School of Computing Science, Simon Fraser University, Burnaby, BC","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":null,"apc_paid":null,"fwci":1.2828,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.79749452,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"14","issue":"3","first_page":"696","last_page":"712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.861129641532898},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7326030135154724},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6924797296524048},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5971080660820007},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5918651223182678},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.583338737487793},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5080559253692627},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.49424365162849426},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4678780734539032},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.42627543210983276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2595827579498291},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1725715696811676},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12560710310935974}],"concepts":[{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.861129641532898},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7326030135154724},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6924797296524048},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5971080660820007},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5918651223182678},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.583338737487793},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5080559253692627},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.49424365162849426},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4678780734539032},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.42627543210983276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2595827579498291},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1725715696811676},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12560710310935974},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059370","descriptor_name":"RNA Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2016.2522421","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2522421","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26915129","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26915129","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7194732308","display_name":null,"funder_award_id":"611362","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W258887590","https://openalex.org/W315636989","https://openalex.org/W1497672938","https://openalex.org/W1504401263","https://openalex.org/W1559663063","https://openalex.org/W1565992881","https://openalex.org/W1605915073","https://openalex.org/W1606890949","https://openalex.org/W1661638276","https://openalex.org/W1919550323","https://openalex.org/W1964400019","https://openalex.org/W1972855007","https://openalex.org/W1977685739","https://openalex.org/W1983806762","https://openalex.org/W1989933096","https://openalex.org/W1991394186","https://openalex.org/W1992492061","https://openalex.org/W2003004847","https://openalex.org/W2003956388","https://openalex.org/W2007550449","https://openalex.org/W2010923753","https://openalex.org/W2011271395","https://openalex.org/W2012192331","https://openalex.org/W2013261319","https://openalex.org/W2023996174","https://openalex.org/W2026311919","https://openalex.org/W2028512329","https://openalex.org/W2029281319","https://openalex.org/W2029282611","https://openalex.org/W2034762276","https://openalex.org/W2040843640","https://openalex.org/W2044326807","https://openalex.org/W2051231236","https://openalex.org/W2059329364","https://openalex.org/W2075906950","https://openalex.org/W2079611888","https://openalex.org/W2091617512","https://openalex.org/W2091705944","https://openalex.org/W2092853022","https://openalex.org/W2094670694","https://openalex.org/W2096327663","https://openalex.org/W2103848900","https://openalex.org/W2105916282","https://openalex.org/W2106099297","https://openalex.org/W2107334084","https://openalex.org/W2107424892","https://openalex.org/W2108789556","https://openalex.org/W2112326638","https://openalex.org/W2112911320","https://openalex.org/W2112937295","https://openalex.org/W2114403289","https://openalex.org/W2119863995","https://openalex.org/W2123184175","https://openalex.org/W2127077041","https://openalex.org/W2128000932","https://openalex.org/W2130263042","https://openalex.org/W2136085935","https://openalex.org/W2136353426","https://openalex.org/W2138336530","https://openalex.org/W2143407915","https://openalex.org/W2145773259","https://openalex.org/W2148510296","https://openalex.org/W2152635855","https://openalex.org/W2155869782","https://openalex.org/W2157483415","https://openalex.org/W2162224067","https://openalex.org/W2163880078","https://openalex.org/W2165520641","https://openalex.org/W2170030776","https://openalex.org/W2172030723","https://openalex.org/W2617372835","https://openalex.org/W6609701964"],"related_works":["https://openalex.org/W2159621058","https://openalex.org/W2148725278","https://openalex.org/W2954092143","https://openalex.org/W1583489351","https://openalex.org/W1999060916","https://openalex.org/W2141351700","https://openalex.org/W2135373808","https://openalex.org/W1997175692","https://openalex.org/W2105081912","https://openalex.org/W2796011749"],"abstract_inverted_index":{"RNA":[0,13,25,34,47,94,128,137,143,155],"visualization":[1,95],"is":[2,158],"crucial":[3],"in":[4,30,46,69,90,96,99,127],"order":[5],"to":[6,41,67,170,172],"understand":[7],"the":[8,21,31,84,91,100,133,164,176],"relationship":[9],"that":[10,86],"exists":[11],"between":[12,56],"structure":[14,26,38],"and":[15,124,141,149,167,180],"its":[16],"function,":[17],"as":[18,20,73],"well":[19],"development":[22],"of":[23,33,61,93,112,120,154,163],"better":[24],"prediction":[27],"algorithms.":[28],"However,":[29],"context":[32],"visualization,":[35],"one":[36],"key":[37],"remains":[39],"difficult":[40],"visualize:":[42],"Pseudoknots.":[43],"Pseudoknots":[44],"occur":[45],"folding":[48],"when":[49],"two":[50,102],"secondary":[51],"structural":[52,138],"components":[53,63],"form":[54],"base-pairs":[55],"them.":[57],"The":[58,104],"three-dimensional":[59],"nature":[60],"these":[62],"makes":[64],"them":[65],"challenging":[66],"visualize":[68,173],"two-dimensional":[70,97],"media,":[71],"such":[72],"print":[74],"media":[75,98],"or":[76],"screens.":[77],"In":[78],"this":[79],"review,":[80],"we":[81,131],"focus":[82],"on":[83],"advancements":[85],"have":[87],"been":[88],"made":[89],"field":[92],"past":[101],"decades.":[103],"review":[105],"aims":[106],"at":[107],"presenting":[108],"all":[109],"relevant":[110],"aspects":[111],"pseudoknot":[113],"visualization.":[114],"We":[115],"start":[116],"with":[117],"an":[118],"overview":[119],"several":[121],"pseudoknotted":[122,148],"structures":[123],"their":[125],"relevance":[126],"function.":[129],"Next,":[130],"discuss":[132],"theoretical":[134],"basis":[135],"for":[136,146],"topology":[139],"classification":[140,144,156],"present":[142],"systems":[145],"both":[147],"non-pseudoknotted":[150],"RNAs.":[151],"Each":[152],"description":[153],"system":[157],"followed":[159],"by":[160],"a":[161],"discussion":[162],"software":[165],"tools":[166],"algorithms":[168],"developed":[169],"date":[171],"RNA,":[174],"comparing":[175],"different":[177],"tools'":[178],"strengths":[179],"shortcomings.":[181]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
