{"id":"https://openalex.org/W2531919408","doi":"https://doi.org/10.1109/tcbb.2016.2616469","title":"Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs","display_name":"Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs","publication_year":2016,"publication_date":"2016-10-11","ids":{"openalex":"https://openalex.org/W2531919408","doi":"https://doi.org/10.1109/tcbb.2016.2616469","mag":"2531919408","pmid":"https://pubmed.ncbi.nlm.nih.gov/27740495"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2016.2616469","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2616469","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029914279","display_name":"Jun Hu","orcid":"https://orcid.org/0000-0001-9202-7515"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Hu","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100421528","display_name":"Yang Li","orcid":"https://orcid.org/0000-0002-4838-5275"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100447231","display_name":"Ming Zhang","orcid":"https://orcid.org/0000-0001-9181-5739"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]},{"id":"https://openalex.org/I4210096899","display_name":"Jiangsu University of Science and Technology","ror":"https://ror.org/00tyjp878","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210096899"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Jiangsu University of Science and Technology, Zhenjiang, China","School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Jiangsu University of Science and Technology, Zhenjiang, China","institution_ids":["https://openalex.org/I4210096899"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing, China","institution_ids":["https://openalex.org/I36399199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030350248","display_name":"Xibei Yang","orcid":"https://orcid.org/0000-0001-9708-1027"},"institutions":[{"id":"https://openalex.org/I4210096899","display_name":"Jiangsu University of Science and Technology","ror":"https://ror.org/00tyjp878","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210096899"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xibei Yang","raw_affiliation_strings":["School of Computer Science and Engineering, Jiangsu University of Science and Technology, Zhenjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Jiangsu University of Science and Technology, Zhenjiang, China","institution_ids":["https://openalex.org/I4210096899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076024045","display_name":"Hong\u2010Bin Shen","orcid":"https://orcid.org/0000-0002-4029-3325"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong-Bin Shen","raw_affiliation_strings":["Department of Automation, Shanghai Jiao Tong University","Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Shanghai Jiao Tong University","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China, Shanghai, China","institution_ids":["https://openalex.org/I1327237609"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008960436","display_name":"Dong\u2010Jun Yu","orcid":"https://orcid.org/0000-0002-6786-8053"},"institutions":[{"id":"https://openalex.org/I36399199","display_name":"Nanjing University of Science and Technology","ror":"https://ror.org/00xp9wg62","country_code":"CN","type":"education","lineage":["https://openalex.org/I36399199"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong-Jun Yu","raw_affiliation_strings":["Key Laboratory of Intelligent Perception and Systems for High-Dimensional Information of Ministry of Education, Nanjing University of Science and Technology, Nanjing, P.R. China"],"raw_orcid":"https://orcid.org/0000-0002-6786-8053","affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Perception and Systems for High-Dimensional Information of Ministry of Education, Nanjing University of Science and Technology, Nanjing, P.R. China","institution_ids":["https://openalex.org/I36399199"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.0085,"has_fulltext":false,"cited_by_count":108,"citation_normalized_percentile":{"value":0.94286487,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"14","issue":"6","first_page":"1389","last_page":"1398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.778037428855896},{"id":"https://openalex.org/keywords/boosting","display_name":"Boosting (machine learning)","score":0.7091872692108154},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5136460661888123},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5104143023490906},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5019252300262451},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48739367723464966},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4765527844429016},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4746863543987274},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.4640452265739441},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4386865496635437},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4100492298603058},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3645256757736206},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26464372873306274},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16910967230796814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16488909721374512},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.08578506112098694}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.778037428855896},{"id":"https://openalex.org/C46686674","wikidata":"https://www.wikidata.org/wiki/Q466303","display_name":"Boosting (machine learning)","level":2,"score":0.7091872692108154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5136460661888123},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5104143023490906},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5019252300262451},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48739367723464966},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4765527844429016},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4746863543987274},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4640452265739441},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4386865496635437},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4100492298603058},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3645256757736206},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26464372873306274},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16910967230796814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16488909721374512},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.08578506112098694},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2016.2616469","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2016.2616469","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27740495","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27740495","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3067877348","display_name":"\u57fa\u4e8e\u5206\u5b50\u663e\u5fae\u56fe\u50cf\u590d\u6742\u6a21\u5f0f\u7406\u89e3\u7684\u86cb\u767d\u8d28\u4e9a\u7ec6\u80de\u5b9a\u4f4d\u53ca\u4f4d\u7f6e\u52a8\u6001\u8f6c\u79fb\u68c0\u6d4b\u7814\u7a76","funder_award_id":"61671288","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4492961534","display_name":"\u57fa\u4e8e\u591a\u7c92\u5ea6\u4fe1\u606f\u7c92\u5316\u7684\u6570\u636e\u5206\u6790\u65b9\u6cd5\u53ca\u5176\u5e94\u7528\u7814\u7a76","funder_award_id":"61572242","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4667377601","display_name":null,"funder_award_id":"BK20141403","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G4790578379","display_name":null,"funder_award_id":"201606840087","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G4975541918","display_name":"\u86cb\u767d\u8d28-\u914d\u4f53\u7ed1\u5b9a\u533a\u57df\u9884\u6d4b\u7684\u7279\u5f81\u62bd\u53d6\u53ca\u5b66\u4e60\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61373062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5396060342","display_name":null,"funder_award_id":"30916011327","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7829283020","display_name":null,"funder_award_id":"16JC1404300","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1019830208","https://openalex.org/W1491553314","https://openalex.org/W1607931568","https://openalex.org/W1925336368","https://openalex.org/W1964880253","https://openalex.org/W1971894358","https://openalex.org/W1973356821","https://openalex.org/W1977628834","https://openalex.org/W1978987398","https://openalex.org/W1994122295","https://openalex.org/W2003144438","https://openalex.org/W2004360551","https://openalex.org/W2009926290","https://openalex.org/W2014069437","https://openalex.org/W2019971393","https://openalex.org/W2032690714","https://openalex.org/W2038670706","https://openalex.org/W2043638247","https://openalex.org/W2053709912","https://openalex.org/W2076063813","https://openalex.org/W2080099205","https://openalex.org/W2089716128","https://openalex.org/W2096986143","https://openalex.org/W2097220641","https://openalex.org/W2099485600","https://openalex.org/W2111705855","https://openalex.org/W2112832917","https://openalex.org/W2116139800","https://openalex.org/W2118978333","https://openalex.org/W2119948329","https://openalex.org/W2128533758","https://openalex.org/W2131675589","https://openalex.org/W2131994815","https://openalex.org/W2133312664","https://openalex.org/W2136886948","https://openalex.org/W2141149420","https://openalex.org/W2145023212","https://openalex.org/W2145429131","https://openalex.org/W2147580225","https://openalex.org/W2148603752","https://openalex.org/W2149997286","https://openalex.org/W2152856869","https://openalex.org/W2153635508","https://openalex.org/W2154477800","https://openalex.org/W2155201844","https://openalex.org/W2156125289","https://openalex.org/W2156136208","https://openalex.org/W2157122545","https://openalex.org/W2158261944","https://openalex.org/W2170441710","https://openalex.org/W2198630282","https://openalex.org/W2216669303","https://openalex.org/W2260093441","https://openalex.org/W2314115072","https://openalex.org/W2413731729","https://openalex.org/W2414597686","https://openalex.org/W4213149192","https://openalex.org/W6610017368","https://openalex.org/W6638543776"],"related_works":["https://openalex.org/W2073883415","https://openalex.org/W1986279376","https://openalex.org/W2135470984","https://openalex.org/W2159663778","https://openalex.org/W2015809665","https://openalex.org/W2065993463","https://openalex.org/W2935275081","https://openalex.org/W2082535576","https://openalex.org/W1568877569","https://openalex.org/W2348674368"],"abstract_inverted_index":{"Protein-DNA":[0],"interactions":[1],"are":[2,110,185],"ubiquitous":[3],"in":[4,33],"a":[5,51,66,81,114,166],"wide":[6],"variety":[7],"of":[8,40,124,139],"biological":[9],"processes.":[10],"Correctly":[11],"locating":[12],"DNA-binding":[13,140],"residues":[14,60],"solely":[15],"from":[16,61],"protein":[17,26,41],"sequences":[18,42],"is":[19,126,148],"an":[20],"important":[21],"but":[22],"challenging":[23],"task":[24],"for":[25,56,91,190],"function":[27],"annotations":[28],"and":[29,70,79,141,170,183],"drug":[30],"discovery,":[31],"especially":[32],"the":[34,89,94,99,119,122,130,137,152,162],"post-genomic":[35],"era":[36],"where":[37],"large":[38],"volumes":[39],"have":[43],"quickly":[44],"accumulated.":[45],"In":[46],"this":[47],"study,":[48],"we":[49],"report":[50],"new":[52],"predictor,":[53],"named":[54],"TargetDNA,":[55],"targeting":[57],"protein-DNA":[58,175],"binding":[59,176],"primary":[62],"sequences.":[63],"TargetDNA":[64,164,180],"uses":[65],"protein's":[67],"evolutionary":[68],"information":[69],"its":[71],"predicted":[72],"solvent":[73],"accessibility":[74],"as":[75,108],"two":[76,95],"base":[77],"features":[78],"employs":[80],"centered":[82],"linear":[83],"kernel":[84],"alignment":[85],"algorithm":[86],"to":[87,118,127],"learn":[88],"weights":[90],"weightedly":[92,100],"combining":[93],"features.":[96],"Based":[97],"on":[98],"combined":[101],"feature,":[102],"multiple":[103,153],"initial":[104],"predictors":[105],"with":[106,129],"SVM":[107],"classifiers":[109],"trained":[111,155],"by":[112,150],"applying":[113],"random":[115],"under-sampling":[116],"technique":[117],"original":[120],"dataset,":[121],"purpose":[123],"which":[125],"cope":[128],"severe":[131],"imbalance":[132],"phenomenon":[133],"that":[134,161],"exists":[135],"between":[136],"number":[138],"non-binding":[142],"residues.":[143],"The":[144,179],"final":[145],"ensembled":[146],"predictor":[147],"obtained":[149],"boosting":[151],"initially":[154],"predictors.":[156,178],"Experimental":[157],"simulation":[158],"results":[159],"demonstrate":[160],"proposed":[163],"achieves":[165],"high":[167],"prediction":[168],"performance":[169],"outperforms":[171],"many":[172],"existing":[173],"sequence-based":[174],"residue":[177],"web":[181],"server":[182],"datasets":[184],"freely":[186],"available":[187],"at":[188],"http://csbio.njust.edu.cn/bioinf/TargetDNA/":[189],"academic":[191],"use.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
