{"id":"https://openalex.org/W2117911302","doi":"https://doi.org/10.1186/1471-2105-11-72","title":"Bias correction and Bayesian analysis of aggregate counts in SAGE libraries","display_name":"Bias correction and Bayesian analysis of aggregate counts in SAGE libraries","publication_year":2010,"publication_date":"2010-02-03","ids":{"openalex":"https://openalex.org/W2117911302","doi":"https://doi.org/10.1186/1471-2105-11-72","mag":"2117911302","pmid":"https://pubmed.ncbi.nlm.nih.gov/20128916"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-72","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-72","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-72","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-72","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090733785","display_name":"Russell Zaretzki","orcid":"https://orcid.org/0000-0001-9769-4894"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell L Zaretzki","raw_affiliation_strings":["Department of Statistics, Operations, and Management Science, The University of Tennessee, 331 Stokely Management Center, Knoxville, TN 37996, USA. rzaretzk@utk.edu","Department of Statistics, Operations and Management Science, The University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Operations, and Management Science, The University of Tennessee, 331 Stokely Management Center, Knoxville, TN 37996, USA. rzaretzk@utk.edu","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Department of Statistics, Operations and Management Science, The University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080011508","display_name":"Michael A. Gilchrist","orcid":"https://orcid.org/0000-0002-6936-0771"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A Gilchrist","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, The University of Tennessee, Knoxville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, The University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066514476","display_name":"William M. Briggs","orcid":"https://orcid.org/0000-0001-8260-8244"},"institutions":[{"id":"https://openalex.org/I1341523491","display_name":"NewYork\u2013Presbyterian Brooklyn Methodist Hospital","ror":"https://ror.org/04929s478","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1340179700","https://openalex.org/I1341523491"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William M Briggs","raw_affiliation_strings":["Department of Emergency Medicine, Methodist Hospital, Brooklyn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, Methodist Hospital, Brooklyn, USA","institution_ids":["https://openalex.org/I1341523491"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034408150","display_name":"Artin Armagan","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Artin Armagan","raw_affiliation_strings":["Department of Statistical Science, Duke University, Durham, USA","Department of Statistical Science (Duke University), Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistical Science, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Statistical Science (Duke University), Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.7479,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.69836857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"11","issue":"1","first_page":"72","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6549000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.6549000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.04100000113248825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.03750000149011612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/univariate","display_name":"Univariate","score":0.6659655570983887},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6536053419113159},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6121346354484558},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6025348901748657},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5561171174049377},{"id":"https://openalex.org/keywords/aggregate","display_name":"Aggregate (composite)","score":0.4722708463668823},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.46238911151885986},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.41012537479400635},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3981534540653229},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.37700966000556946},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3448777198791504},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32555657625198364},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2338539958000183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22712412476539612},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1491745412349701},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0958099365234375},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08508861064910889}],"concepts":[{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.6659655570983887},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6536053419113159},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6121346354484558},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6025348901748657},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5561171174049377},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.4722708463668823},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.46238911151885986},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.41012537479400635},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3981534540653229},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.37700966000556946},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3448777198791504},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32555657625198364},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2338539958000183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22712412476539612},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1491745412349701},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0958099365234375},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08508861064910889},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-11-72","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-72","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-72","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20128916","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20128916","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:1909324","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2829012","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0395c91de9fd43069b3f84629be27bd6","is_oa":false,"landing_page_url":"https://doaj.org/article/0395c91de9fd43069b3f84629be27bd6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 72 (2010)","raw_type":"article"},{"id":"pmh:oai:dukespace.lib.duke.edu:10161/4340","is_oa":true,"landing_page_url":"http://hdl.handle.net/10161/4340","pdf_url":null,"source":{"id":"https://openalex.org/S4306400687","display_name":"DukeSpace (Duke University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170897317","host_organization_name":"Duke University","host_organization_lineage":["https://openalex.org/I170897317"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-72","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-72","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-72","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117911302.pdf","grobid_xml":"https://content.openalex.org/works/W2117911302.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W128740895","https://openalex.org/W176623880","https://openalex.org/W964041640","https://openalex.org/W1483561623","https://openalex.org/W1497616403","https://openalex.org/W1509684938","https://openalex.org/W1512751546","https://openalex.org/W1549060837","https://openalex.org/W1973919039","https://openalex.org/W1977216123","https://openalex.org/W2010888033","https://openalex.org/W2024315245","https://openalex.org/W2045656233","https://openalex.org/W2073883677","https://openalex.org/W2100448568","https://openalex.org/W2112627990","https://openalex.org/W2116166762","https://openalex.org/W2121599969","https://openalex.org/W2122889787","https://openalex.org/W2125821742","https://openalex.org/W2131446214","https://openalex.org/W2133203904","https://openalex.org/W2133636765","https://openalex.org/W2151253576","https://openalex.org/W4213265720","https://openalex.org/W4213387068","https://openalex.org/W4232383088","https://openalex.org/W4248415074"],"related_works":["https://openalex.org/W2049578243","https://openalex.org/W1828158523","https://openalex.org/W2122079181","https://openalex.org/W2000145235","https://openalex.org/W3122045730","https://openalex.org/W1985848810","https://openalex.org/W2889939530","https://openalex.org/W2399195672","https://openalex.org/W3121881699","https://openalex.org/W2748838164"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tag-based":[1],"techniques,":[2],"such":[3],"as":[4,187],"SAGE,":[5],"are":[6,127,135,158,174,209],"commonly":[7],"used":[8,104,159],"to":[9,30,102,106,142,160,188,233,270],"sample":[10,59],"the":[11,21,52,61,76,87,99,121,146,162,165,177,212,236,247,261],"mRNA":[12,36],"pool":[13],"of":[14,40,60,86,98,155,164,170,179,218,223,239,246,256],"an":[15],"organism's":[16],"transcriptome.":[17],"Incomplete":[18],"digestion":[19],"during":[20],"tag":[22,43,54,79,124,147,171,206,273],"formation":[23,125,172,207,274],"process":[24],"may":[25,139],"allow":[26,96],"for":[27,120,205,263,280],"multiple":[28],"tags":[29],"be":[31,70,103,140,193],"generated":[32],"from":[33],"a":[34,42,50,57,83,118,227,240],"given":[35,186,241],"transcript.":[37],"The":[38,168,221,243],"probability":[39],"forming":[41],"varies":[44],"with":[45,211],"its":[46],"relative":[47],"location.":[48],"As":[49],"result,":[51],"observed":[53,88],"counts":[55],"represent":[56],"biased":[58],"actual":[62],"transcript":[63],"pool.":[64],"In":[65],"SAGE":[66],"this":[67,91],"bias":[68,92,173],"can":[69,192],"avoided":[71],"by":[72],"ignoring":[73],"all":[74],"but":[75,80],"3'":[77],"most":[78],"will":[81],"discard":[82],"large":[84],"fraction":[85],"data.":[89],"Taking":[90],"into":[93],"account":[94,204],"should":[95],"more":[97],"available":[100],"data":[101,157],"leading":[105],"increased":[107],"statistical":[108],"power.":[109],"RESULTS:":[110],"Three":[111],"new":[112],"hierarchical":[113],"models,":[114],"which":[115],"directly":[116],"embed":[117],"model":[119],"variation":[122,271],"in":[123,176,195,272],"probability,":[126],"proposed":[128],"and":[129,148,153,253,266],"their":[130],"associated":[131],"Bayesian":[132,200],"inference":[133,201],"algorithms":[134,191,202],"developed.":[136],"These":[137],"models":[138],"applied":[141,194],"libraries":[143],"at":[144],"both":[145,251],"aggregate":[149],"level.":[150],"Simulation":[151],"experiments":[152],"analysis":[154],"real":[156],"contrast":[161],"accuracy":[163,222],"various":[166],"methods.":[167],"consequences":[169],"discussed":[175],"context":[178],"testing":[180,279],"differential":[181,257,281],"expression.":[182,258,282],"A":[183],"description":[184],"is":[185,231],"how":[189],"these":[190],"that":[196,203],"context.":[197],"CONCLUSIONS:":[198],"Several":[199],"effects":[208],"compared":[210],"DPB":[213],"algorithm":[214],"providing":[215],"clear":[216],"evidence":[217],"superior":[219],"performance.":[220],"inferences":[224],"when":[225,278],"using":[226],"particular":[228],"non-informative":[229],"prior":[230],"found":[232],"depend":[234],"on":[235],"expression":[237],"level":[238],"gene.":[242],"multivariate":[244],"nature":[245],"approach":[248],"easily":[249],"allows":[250],"univariate":[252],"joint":[254],"tests":[255],"Calculations":[259],"demonstrate":[260],"potential":[262],"false":[264],"positive":[265],"negative":[267],"findings":[268],"due":[269],"probabilities":[275],"across":[276],"samples":[277]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
