{"id":"https://openalex.org/W3092689327","doi":"https://doi.org/10.1186/s12859-020-03806-w","title":"oposSOM-Browser: an interactive tool to explore omics data landscapes in health science","display_name":"oposSOM-Browser: an interactive tool to explore omics data landscapes in health science","publication_year":2020,"publication_date":"2020-10-19","ids":{"openalex":"https://openalex.org/W3092689327","doi":"https://doi.org/10.1186/s12859-020-03806-w","mag":"3092689327","pmid":"https://pubmed.ncbi.nlm.nih.gov/33076824"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03806-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03806-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03806-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03806-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065981953","display_name":"Henry Loeffler\u2010Wirth","orcid":"https://orcid.org/0000-0001-8239-440X"},"institutions":[{"id":"https://openalex.org/I147765834","display_name":"Leipzig University of Applied Sciences","ror":"https://ror.org/03xgcq477","country_code":"DE","type":"education","lineage":["https://openalex.org/I147765834"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Henry Loeffler-Wirth","raw_affiliation_strings":["Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany. wirth@izbi.uni-leipzig.de","Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8239-440X","affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany. wirth@izbi.uni-leipzig.de","institution_ids":["https://openalex.org/I147765834","https://openalex.org/I926574661"]},{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045164625","display_name":"Jasmin Reikowski","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jasmin Reikowski","raw_affiliation_strings":["Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008460820","display_name":"Siras Hakobyan","orcid":"https://orcid.org/0000-0002-6875-2482"},"institutions":[{"id":"https://openalex.org/I4210133976","display_name":"Institute of Molecular Biology","ror":"https://ror.org/03t8mqd25","country_code":"AM","type":"facility","lineage":["https://openalex.org/I4210133976","https://openalex.org/I99064381"]},{"id":"https://openalex.org/I99064381","display_name":"National Academy of Sciences of Armenia","ror":"https://ror.org/04mczx267","country_code":"AM","type":"government","lineage":["https://openalex.org/I99064381"]}],"countries":["AM"],"is_corresponding":false,"raw_author_name":"Siras Hakobyan","raw_affiliation_strings":["Group of Bioinformatics, Institute of Molecular Biology, National Academy of Sciences, 7 Hasratyan str, 0014, Yerevan, Armenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Bioinformatics, Institute of Molecular Biology, National Academy of Sciences, 7 Hasratyan str, 0014, Yerevan, Armenia","institution_ids":["https://openalex.org/I4210133976","https://openalex.org/I99064381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007901638","display_name":"Jonas Wagner","orcid":"https://orcid.org/0000-0002-1645-1848"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Wagner","raw_affiliation_strings":["LIFE, Leipzig Research Center for Civilization Diseases, Leipzig University, Philipp-Rosenthal-Stra\u00dfe 27, 04103, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIFE, Leipzig Research Center for Civilization Diseases, Leipzig University, Philipp-Rosenthal-Stra\u00dfe 27, 04103, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045754538","display_name":"Hans Binder","orcid":"https://orcid.org/0000-0002-2242-4678"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans Binder","raw_affiliation_strings":["Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, 04107, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5065981953"],"corresponding_institution_ids":["https://openalex.org/I147765834","https://openalex.org/I926574661"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1661,"currency":"EUR","value_usd":1791},"fwci":0.9692,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.73900953,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"21","issue":"1","first_page":"465","last_page":"465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.6017318367958069},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5807772278785706},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5643911361694336},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48239123821258545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48209264874458313},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4812457263469696},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4737979769706726},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3690568208694458},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3549392819404602},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.25871187448501587},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.25655269622802734},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23834756016731262},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1898626685142517},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17597618699073792}],"concepts":[{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.6017318367958069},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5807772278785706},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5643911361694336},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48239123821258545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48209264874458313},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4812457263469696},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4737979769706726},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3690568208694458},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3549392819404602},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.25871187448501587},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.25655269622802734},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23834756016731262},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1898626685142517},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17597618699073792},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016393","descriptor_name":"Lymphoma, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016393","descriptor_name":"Lymphoma, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016393","descriptor_name":"Lymphoma, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016393","descriptor_name":"Lymphoma, B-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03806-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03806-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03806-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33076824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33076824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a5bf3188f77445a3922ef4b678b3d89e","is_oa":true,"landing_page_url":"https://doaj.org/article/a5bf3188f77445a3922ef4b678b3d89e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-5 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7574456","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7574456","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03806-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03806-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03806-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3092689327.pdf","grobid_xml":"https://content.openalex.org/works/W3092689327.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1989619485","https://openalex.org/W2139696807","https://openalex.org/W2330617406","https://openalex.org/W2866450277","https://openalex.org/W2883104035","https://openalex.org/W2945471311","https://openalex.org/W2945907599","https://openalex.org/W3096936586","https://openalex.org/W3114222731"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2751110224","https://openalex.org/W2039602384","https://openalex.org/W2114870884","https://openalex.org/W2496664377","https://openalex.org/W4312613920","https://openalex.org/W2288407995","https://openalex.org/W2147036980","https://openalex.org/W304756206"],"abstract_inverted_index":{"BACKGROUND:":[0],"oposSOM":[1],"is":[2],"a":[3,35],"comprehensive,":[4],"machine":[5],"learning":[6],"based":[7],"open-source":[8],"data":[9,47,81,86],"analysis":[10],"software":[11],"combining":[12],"functionalities":[13,26],"such":[14],"as":[15,30],"diversity":[16],"analyses,":[17],"biomarker":[18],"selection,":[19],"function":[20],"mining,":[21],"and":[22,58,70,94,99],"visualization.":[23],"RESULTS:":[24],"These":[25],"are":[27],"now":[28],"available":[29,79],"interactive":[31,54,80],"web-browser":[32],"application":[33],"for":[34,83],"broader":[36],"user":[37],"audience":[38],"interested":[39],"in":[40],"extracting":[41],"detailed":[42],"information":[43],"from":[44],"high-throughput":[45],"omics":[46],"sets":[48,87],"pre-processed":[49],"by":[50],"oposSOM.":[51],"It":[52],"enables":[53],"browsing":[55,82],"of":[56,62,66,88,95],"single-gene":[57],"gene":[59],"set":[60],"profiles,":[61],"molecular":[63],"'portrait":[64],"landscapes',":[65],"associated":[67],"phenotype":[68],"diversity,":[69],"signalling":[71],"pathway":[72],"activation":[73],"patterns.":[74],"CONCLUSION:":[75],"The":[76],"oposSOM-Browser":[77],"makes":[78],"five":[84],"transcriptome":[85],"cancer":[89],"(melanomas,":[90],"B-cell":[91],"lymphomas,":[92],"gliomas)":[93],"peripheral":[96],"blood":[97],"(sepsis":[98],"healthy":[100],"individuals)":[101],"at":[102],"www.izbi.uni-leipzig.de/opossom-browser":[103],".":[104]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}