{"id":"https://openalex.org/W2605315130","doi":"https://doi.org/10.1371/journal.pcbi.1005469","title":"Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data","display_name":"Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data","publication_year":2017,"publication_date":"2017-04-03","ids":{"openalex":"https://openalex.org/W2605315130","doi":"https://doi.org/10.1371/journal.pcbi.1005469","mag":"2605315130","pmid":"https://pubmed.ncbi.nlm.nih.gov/28369076"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1005469","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005469","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005469&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005469&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021701900","display_name":"Ofir Shukron","orcid":null},"institutions":[{"id":"https://openalex.org/I4210129409","display_name":"Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/03mxktp47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210096427","https://openalex.org/I4210129409"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ofir Shukron","raw_affiliation_strings":["Institute of Biology, Ecole Normale Sup\u00e9rieure, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biology, Ecole Normale Sup\u00e9rieure, Paris, France","institution_ids":["https://openalex.org/I4210129409"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006152136","display_name":"David Holcman","orcid":"https://orcid.org/0000-0001-9854-5014"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210129409","display_name":"Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/03mxktp47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210096427","https://openalex.org/I4210129409"]}],"countries":["FR","GB"],"is_corresponding":true,"raw_author_name":"David Holcman","raw_affiliation_strings":["Institute of Biology, Ecole Normale Sup\u00e9rieure, Paris, France","Mathematical Institute, University of Oxford, Oxford, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-9854-5014","affiliations":[{"raw_affiliation_string":"Institute of Biology, Ecole Normale Sup\u00e9rieure, Paris, France","institution_ids":["https://openalex.org/I4210129409"]},{"raw_affiliation_string":"Mathematical Institute, University of Oxford, Oxford, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006152136"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210129409"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.1861,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.88032903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"4","first_page":"e1005469","last_page":"e1005469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7383517026901245},{"id":"https://openalex.org/keywords/diagonal","display_name":"Diagonal","score":0.5646154880523682},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.5117311477661133},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.4874022603034973},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.4395192265510559},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4283926486968994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41884639859199524},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4041725695133209},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3489900231361389},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.33673757314682007},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21923711895942688},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18083027005195618},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17689752578735352},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11192268133163452},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11113694310188293}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7383517026901245},{"id":"https://openalex.org/C130367717","wikidata":"https://www.wikidata.org/wiki/Q189791","display_name":"Diagonal","level":2,"score":0.5646154880523682},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.5117311477661133},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.4874022603034973},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.4395192265510559},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4283926486968994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41884639859199524},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4041725695133209},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3489900231361389},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.33673757314682007},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21923711895942688},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18083027005195618},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17689752578735352},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11192268133163452},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11113694310188293},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D036262","descriptor_name":"Empirical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036262","descriptor_name":"Empirical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036262","descriptor_name":"Empirical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1005469","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005469","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005469&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:28369076","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28369076","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1005469","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005469","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:ed27e443586a4d8191183b3a4736956d","is_oa":false,"landing_page_url":"https://doaj.org/article/ed27e443586a4d8191183b3a4736956d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 13, Iss 4, p e1005469 (2017)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/4811674","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Transient_chromatin_properties_revealed_by_polymer_models_and_stochastic_simulations_constructed_from_Chromosomal_Capture_data/4811674","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:5393903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5393903","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1005469","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1005469","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1005469&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1316933359","display_name":"Memory in living systems: an integrated approach","funder_award_id":"ANR-10-LABX-0054","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322364","display_name":"Labex","ror":"https://ror.org/01cvsyf94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2605315130.pdf","grobid_xml":"https://content.openalex.org/works/W2605315130.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W637287754","https://openalex.org/W1153730701","https://openalex.org/W1965863160","https://openalex.org/W1989012208","https://openalex.org/W1989582360","https://openalex.org/W2009576540","https://openalex.org/W2012842652","https://openalex.org/W2017923949","https://openalex.org/W2019862702","https://openalex.org/W2023621898","https://openalex.org/W2025620572","https://openalex.org/W2025881201","https://openalex.org/W2034598915","https://openalex.org/W2043314233","https://openalex.org/W2058946062","https://openalex.org/W2059886783","https://openalex.org/W2061015334","https://openalex.org/W2064537118","https://openalex.org/W2065006553","https://openalex.org/W2065577331","https://openalex.org/W2068365329","https://openalex.org/W2070021921","https://openalex.org/W2074915491","https://openalex.org/W2078526277","https://openalex.org/W2088238021","https://openalex.org/W2098497185","https://openalex.org/W2106827861","https://openalex.org/W2107828489","https://openalex.org/W2126464107","https://openalex.org/W2127942857","https://openalex.org/W2130240043","https://openalex.org/W2137548675","https://openalex.org/W2145619687","https://openalex.org/W2148983475","https://openalex.org/W2161212572","https://openalex.org/W2161458929","https://openalex.org/W2162618509","https://openalex.org/W2165780114","https://openalex.org/W2320440892","https://openalex.org/W2323858088","https://openalex.org/W2330707342","https://openalex.org/W2333437393","https://openalex.org/W2352510408","https://openalex.org/W2471679189","https://openalex.org/W2488498398","https://openalex.org/W3098558422","https://openalex.org/W3106318171","https://openalex.org/W6620610010"],"related_works":["https://openalex.org/W3195254751","https://openalex.org/W3116849561","https://openalex.org/W2136004413","https://openalex.org/W2111997778","https://openalex.org/W3180808842","https://openalex.org/W2793253652","https://openalex.org/W2043314233","https://openalex.org/W2065057682","https://openalex.org/W4210812535","https://openalex.org/W2888206159"],"abstract_inverted_index":{"Chromatin":[0],"organization":[1,53],"can":[2],"be":[3],"probed":[4],"by":[5,80,191],"Chromosomal":[6],"Capture":[7],"(5C)":[8],"data,":[9,157],"from":[10,155],"which":[11],"the":[12,49,70,81,84,89,124,129,135,152,164],"encounter":[13,131],"probability":[14,137],"(EP)":[15],"between":[16,51],"genomic":[17,121,141],"sites":[18],"is":[19,27],"presented":[20],"in":[21,94,196],"a":[22,30,44,59,64,100,160,179],"large":[23,31,161],"matrix.":[24,72],"This":[25],"matrix":[26],"averaged":[28],"over":[29],"cell":[32,171],"population,":[33],"revealing":[34],"diagonal":[35,112],"blocks":[36],"called":[37],"Topological":[38],"Associating":[39],"Domains":[40],"(TADs)":[41],"that":[42],"represent":[43],"sub-chromatin":[45],"organization.":[46],"To":[47,87],"study":[48,183],"relation":[50],"chromatin":[52,189],"and":[54,134,185],"gene":[55],"regulation,":[56],"we":[57,92,98,115,127,158],"introduce":[58,99],"computational":[60],"procedure":[61],"to":[62,109,168,182],"construct":[63,88],"bead-spring":[65],"polymer":[66,90,176],"model":[67,74],"based":[68],"on":[69,151],"EP":[71],"The":[73,174],"permits":[75],"exploring":[76],"transient":[77,186],"properties":[78,187,194],"constrained":[79,190],"statistics":[82],"of":[83,103,138,148,163,188],"5C":[85,156,197],"data.":[86,198],"model,":[91],"proceed":[93],"two":[95],"steps:":[96],"first,":[97],"minimal":[101],"number":[102],"random":[104],"connectors":[105],"inside":[106],"restricted":[107],"regions":[108],"account":[110,116],"for":[111,117],"blocks.":[113],"Second,":[114],"long-range":[118],"frequent":[119],"specific":[120],"interactions.":[122],"Using":[123],"constructed":[125,153],"polymer,":[126],"compute":[128],"first":[130],"time":[132],"distribution":[133],"conditional":[136],"three":[139],"key":[140],"sites.":[142],"By":[143],"simulating":[144],"single":[145],"particle":[146],"trajectories":[147],"loci":[149],"located":[150],"polymers":[154],"found":[159],"variability":[162],"anomalous":[165],"exponent,":[166],"used":[167],"interpret":[169],"live":[170],"imaging":[172],"trajectories.":[173],"present":[175],"construction":[177],"provides":[178],"generic":[180],"tool":[181],"steady-state":[184],"some":[192],"physical":[193],"embedded":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
