{"id":"https://openalex.org/W6966898720","doi":"https://doi.org/10.48550/arxiv.2407.16148","title":"CHIME: LLM-Assisted Hierarchical Organization of Scientific Studies for Literature Review Support","display_name":"CHIME: LLM-Assisted Hierarchical Organization of Scientific Studies for Literature Review Support","publication_year":2024,"publication_date":"2024-07-23","ids":{"openalex":"https://openalex.org/W6966898720","doi":"https://doi.org/10.48550/arxiv.2407.16148"},"language":"en","primary_location":{"id":"pmh:oai:arXiv.org:2407.16148","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.16148","pdf_url":"https://arxiv.org/pdf/2407.16148","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"type":"preprint","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2407.16148","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Hsu, Chao-Chun","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hsu, Chao-Chun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bransom, Erin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bransom, Erin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sparks, Jenna","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sparks, Jenna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Kuehl, Bailey","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kuehl, Bailey","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tan, Chenhao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tan, Chenhao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Wadden, David","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wadden, David","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Wang, Lucy Lu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Lucy Lu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Naik, Aakanksha","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Naik, Aakanksha","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.661300003528595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.661300003528595,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0478999987244606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.03819999843835831,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.7214999794960022},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6812000274658203},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.635200023651123},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5928999781608582},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5742999911308289},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5317000150680542},{"id":"https://openalex.org/keywords/scientific-literature","display_name":"Scientific literature","score":0.45010000467300415},{"id":"https://openalex.org/keywords/hierarchical-organization","display_name":"Hierarchical organization","score":0.41019999980926514}],"concepts":[{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.7214999794960022},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6812000274658203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6771000027656555},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.635200023651123},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5928999781608582},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5742999911308289},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5638999938964844},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5317000150680542},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.45010000467300415},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.4106999933719635},{"id":"https://openalex.org/C2780217385","wikidata":"https://www.wikidata.org/wiki/Q2389284","display_name":"Hierarchical organization","level":2,"score":0.41019999980926514},{"id":"https://openalex.org/C2780310539","wikidata":"https://www.wikidata.org/wiki/Q12547192","display_name":"Imperfect","level":2,"score":0.37630000710487366},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.3582000136375427},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.3393999934196472},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.29440000653266907},{"id":"https://openalex.org/C2779891390","wikidata":"https://www.wikidata.org/wiki/Q964630","display_name":"Custodians","level":2,"score":0.28060001134872437},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.28040000796318054},{"id":"https://openalex.org/C195732255","wikidata":"https://www.wikidata.org/wiki/Q981008","display_name":"Sociology of scientific knowledge","level":2,"score":0.2793999910354614},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.2775000035762787},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.2773999869823456},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27649998664855957},{"id":"https://openalex.org/C124527596","wikidata":"https://www.wikidata.org/wiki/Q17029359","display_name":"Hierarchical control system","level":3,"score":0.26899999380111694},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.25850000977516174}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:arXiv.org:2407.16148","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.16148","pdf_url":"https://arxiv.org/pdf/2407.16148","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"doi:10.48550/arxiv.2407.16148","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2407.16148","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2407.16148","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.16148","pdf_url":"https://arxiv.org/pdf/2407.16148","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W6966898720.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Literature":[0],"review":[1],"requires":[2],"researchers":[3,38],"to":[4,36,52,60,64,86,150,172,179,201],"synthesize":[5],"a":[6,75,111,141,181],"large":[7],"amount":[8],"of":[9,27,33,77,104,143,170],"information":[10],"and":[11,55,101,123,137,154,165,199],"is":[12,58],"increasingly":[13],"challenging":[14,100],"as":[15,46],"the":[16,25,61,99],"scientific":[17,34],"literature":[18,40,210],"expands.":[19],"In":[20],"this":[21,93],"work,":[22],"we":[23,109,155],"investigate":[24],"potential":[26],"LLMs":[28],"for":[29,71,92,140,209],"producing":[30],"hierarchical":[31,44],"organizations":[32,45],"studies":[35,62,78,171],"assist":[37],"with":[39,184],"review.":[41,211],"We":[42,177,195],"define":[43],"tree":[47],"structures":[48],"where":[49],"nodes":[50],"refer":[51],"topical":[53],"categories":[54,122,173],"every":[56],"node":[57],"linked":[59],"assigned":[63],"that":[65,157],"category.":[66],"Our":[67],"naive":[68],"LLM-based":[69],"pipeline":[70],"hierarchy":[72],"generation":[73],"from":[74,107],"set":[76],"produces":[79],"promising":[80],"yet":[81],"imperfect":[82],"hierarchies,":[83],"motivating":[84],"us":[85,149],"collect":[87],"CHIME,":[88],"an":[89],"expert-curated":[90],"dataset":[91,198],"task":[94],"focused":[95],"on":[96,204],"biomedicine.":[97],"Given":[98],"time-consuming":[102],"nature":[103],"building":[105],"hierarchies":[106,133,139],"scratch,":[108],"use":[110],"human-in-the-loop":[112],"process":[113],"in":[114,126],"which":[115,187],"experts":[116],"correct":[117],"errors":[118],"(both":[119],"links":[120],"between":[121],"study":[124,189],"assignment)":[125],"LLM-generated":[127,132],"hierarchies.":[128],"CHIME":[129],"contains":[130],"2,174":[131],"covering":[134],"472":[135],"topics,":[136],"expert-corrected":[138],"subset":[142],"100":[144],"topics.":[145],"Expert":[146],"corrections":[147],"allow":[148],"quantify":[151],"LLM":[152],"performance,":[153],"find":[156],"while":[158],"they":[159],"are":[160],"quite":[161],"good":[162],"at":[163],"generating":[164],"organizing":[166],"categories,":[167],"their":[168],"assignment":[169,190],"could":[174],"be":[175],"improved.":[176],"attempt":[178],"train":[180],"corrector":[182],"model":[183],"human":[185],"feedback":[186],"improves":[188],"by":[191],"12.6":[192],"F1":[193],"points.":[194],"release":[196],"our":[197],"models":[200],"encourage":[202],"research":[203],"developing":[205],"better":[206],"assistive":[207],"tools":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
