{"id":"https://openalex.org/W7131381618","doi":"https://doi.org/10.48550/arxiv.2602.20176","title":"Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design","display_name":"Cross-Chirality Generalization by Axial Vectors for Hetero-Chiral Protein-Peptide Interaction Design","publication_year":2026,"publication_date":"2026-02-13","ids":{"openalex":"https://openalex.org/W7131381618","doi":"https://doi.org/10.48550/arxiv.2602.20176"},"language":null,"primary_location":{"id":"doi:10.48550/arxiv.2602.20176","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.20176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.48550/arxiv.2602.20176","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101480743","display_name":"Ziyi Yang","orcid":"https://orcid.org/0000-0003-1674-2861"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Ziyi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126787898","display_name":"Zitong Tian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tian, Zitong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126813905","display_name":"Yinjun Jia","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jia, Yinjun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126816186","display_name":"Tianyi Zhang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang, Tianyi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103869170","display_name":"Jiqing Zheng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zheng, Jiqing","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126778580","display_name":"Hao Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Hao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126812028","display_name":"Yubu Su","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Su, Yubu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126832730","display_name":"Juncai He","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"He, Juncai","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126797258","display_name":"Lei Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Lei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5121821741","display_name":"Yanyan Lan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lan, Yanyan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.7401999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.7401999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.08659999817609787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.0421999990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.7609999775886536},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.3930000066757202},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.37610000371932983},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.37450000643730164},{"id":"https://openalex.org/keywords/data-driven","display_name":"Data-driven","score":0.36959999799728394}],"concepts":[{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.7609999775886536},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5164999961853027},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5062999725341797},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.3930000066757202},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.37610000371932983},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.37450000643730164},{"id":"https://openalex.org/C2780440489","wikidata":"https://www.wikidata.org/wiki/Q5227278","display_name":"Data-driven","level":2,"score":0.36959999799728394},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.35420000553131104},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.3449999988079071},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31690001487731934},{"id":"https://openalex.org/C124668440","wikidata":"https://www.wikidata.org/wiki/Q2305173","display_name":"Chirality (physics)","level":5,"score":0.29499998688697815},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2840999960899353},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.28299999237060547},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2793999910354614}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.48550/arxiv.2602.20176","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.20176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.48550/arxiv.2602.20176","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2602.20176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Preprint"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"D-peptide":[0,18,66,104],"binders":[1,19],"targeting":[2],"L-proteins":[3],"have":[4],"promising":[5],"therapeutic":[6],"potential.":[7],"Despite":[8],"rapid":[9],"advances":[10],"in":[11,75,83,112],"machine":[12],"learning-based":[13],"target-conditioned":[14],"peptide":[15],"design,":[16],"generating":[17],"remains":[20],"largely":[21],"unexplored.":[22],"In":[23],"this":[24,57],"work,":[25],"we":[26,64],"show":[27],"that":[28,69],"by":[29],"injecting":[30],"axial":[31],"features":[32],"to":[33,41,50],"$E(3)$-equivariant":[34],"(polar)":[35],"vector":[36],"features,":[37],"it":[38],"is":[39],"feasible":[40],"achieve":[42],"cross-chirality":[43],"generalization":[44],"from":[45],"homo-chiral":[46],"(L--L)":[47],"training":[48],"data":[49],"hetero-chiral":[51],"(D--L)":[52],"design":[53,68,102],"tasks.":[54],"By":[55],"implementing":[56],"method":[58],"within":[59],"a":[60],"latent":[61],"diffusion":[62],"model,":[63],"achieved":[65],"binder":[67],"not":[70],"only":[71],"outperforms":[72],"existing":[73],"tools":[74],"\\textit{in":[76],"silico}":[77],"benchmarks,":[78],"but":[79],"also":[80],"demonstrates":[81],"efficacy":[82],"wet-lab":[84,94],"validation.":[85],"To":[86],"our":[87,89],"knowledge,":[88],"approach":[90],"represents":[91],"the":[92,99],"first":[93],"validated":[95],"generative":[96],"AI":[97],"for":[98],"\\textit{de":[100],"novo}":[101],"of":[103],"binders,":[105],"offering":[106],"new":[107],"perspectives":[108],"on":[109],"handling":[110],"chirality":[111],"protein":[113],"design.":[114],"Codes":[115],"are":[116],"available":[117],"at":[118],"https://github.com/YZY010418/PepMirror":[119]},"counts_by_year":[],"updated_date":"2026-08-16T07:02:28.622633","created_date":"2026-02-26T00:00:00"}
