safe

Significance Analysis of Function and Expression

SAFE is a resampling-based method for testing functional categories is gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author	William T. Barry
Maintainer	William T. Barry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("safe")

Vignettes (Documentation)

Package Downloads

SAFEmanual2_0.pdf

Source	safe_2.2.0.tar.gz
Windows binary	safe_2.2.0.zip
OS X binary	safe_2.2.0.tgz

Details

biocViews
Depends	R, SparseM, GO, annotate, Biobase
Suggests	GOstats, Rgraphviz, multtest, hu6800, survival
Imports	GO, annotate, survival, Biobase
SystemRequirements
License	GPL version 2 or newer
URL	http://www.duke.edu/~dinbarry/SAFE/
dependsOnMe
suggestsMe