# MSA2dist <a href="https://www.bioconductor.org/packages/release/bioc/html/MSA2dist.html"><img src="man/figures/logo.png" align="right" height="160" /></a> `MSA2dist` calculates pairwise distances between all sequences of a `DNAStringSet` or a `AAStringSet` using a custom score matrix and conducts codon based analysis. ## Installation instructions Get the latest stable `R` release from [CRAN](http://cran.r-project.org/). Then install `MSA2dist` from [Bioconductor](http://bioconductor.org/) using the following code: ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("MSA2dist") ``` And the development version from [GitHub](https://github.com/kullrich/MSA2dist) with: ``` r BiocManager::install("kullrich/MSA2dist") ``` ## Code of Conduct - Participation guidelines This repository adhere to [Contributor Covenant](http://contributor-covenant.org) code of conduct for in any interactions you have within this project. (see [Code of Conduct](https://github.com/kullrich/MSA2dist/blob/master/CODE_OF_CONDUCT.md)) See also the policy against sexualized discrimination, harassment and violence for the Max Planck Society [Code-of-Conduct](https://www.mpg.de/11961177/code-of-conduct-en.pdf). By contributing to this project, you agree to abide by its terms.