Bioconductor Code: MSA2dist

Graph of MSA2dist

662eead (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_22 branch by A Wokaty <[email protected]> 2025-10-29 11:14:34 -0400;
010a9f3 (origin/RELEASE_3_22, RELEASE_3_22) bump x.y.z version to even y prior to creation of RELEASE_3_22 branch by A Wokaty <[email protected]> 2025-10-29 11:14:34 -0400;
2328f45 bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:44:47 -0400;
d7a8634 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:44:47 -0400;
dcadc7a update DESCRIPTION by Kristian Ullrich <[email protected]> 2025-03-28 09:07:37 +0100;
d109e04 (origin/RELEASE_3_20, RELEASE_3_20) version bump in release by Kristian Ullrich <[email protected]> 2024-11-14 08:20:38 +0100;
83800f3 bug fix: pal2nal.R by Kristian Ullrich <[email protected]> 2024-11-14 08:16:41 +0100;
b5ab038 (origin/master) # MSA2dist 1.11.1 (2024-11-14) by Kristian Ullrich <[email protected]> 2024-11-14 08:08:34 +0100;
17a0ddb bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:07:49 -0400;
22cab08 bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:07:49 -0400;
98bd32e bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:39:56 -0400;
92b6ecd (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:39:56 -0400;
e0d3b1e Substitution matrices BLOSUM* and PAM* have moved from Biostrings to pwalign by Hervé Pagès <[email protected]> 2024-04-23 18:50:22 -0700;
dbfa534 pairwiseAlignment() has moved from Biostrings to pwalign by Hervé Pagès <[email protected]> 2024-04-23 18:45:02 -0700;
fda1405 # fixed local alignments by Kristian Ullrich <[email protected]> 2024-03-28 14:49:04 +0100;
e7ab009 # fix pal2nal man by Kristian Ullrich <[email protected]> 2024-03-18 13:07:00 +0100;
2a8e020 # fixed dnastring2kaks to return correct orientation # fixed pal2nal to use gap_pos-n_i_codons_added-1 by Kristian Ullrich <[email protected]> 2024-03-14 13:55:46 +0100;
085f81e # fixed pal2nal by Kristian Ullrich <[email protected]> 2024-03-14 11:57:17 +0100;
290ae43 # update to version 1.7.1 by Kristian Ullrich <[email protected]> 2024-03-13 17:56:18 +0100;
afe086b bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:39:10 -0400;
c88df72 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:39:10 -0400;
a1139a4 # added aa2selfscore by Kristian Ullrich <[email protected]> 2023-05-24 20:31:50 +0200;
304b90f # added asymmetric score matrix by Kristian Ullrich <[email protected]> 2023-05-22 13:53:17 +0200;
a0644c7 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:35:33 -0400;
1f16259 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:35:33 -0400;
0cd7903 # additional Genetic Codes by Kristian Ullrich <[email protected]> 2022-11-08 17:21:59 +0100;
9a5f9bc bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:20 -0400;
62bf9da (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:20 -0400;
62fb8e6 # change license into GPL-3 due to KaKs_Calculator2.0 rcpp port by Kristian Ullrich <[email protected]> 2022-10-06 14:29:31 +0200;
d361bf4 #changed test-rcpp_KaKs by Kristian Ullrich <[email protected]> 2022-09-22 09:32:54 +0200;
174cb1f #changed rcpp_KaKs return type into list by Kristian Ullrich <[email protected]> 2022-09-19 17:07:05 +0200;
941c4db <a href="#added">#added</a> README by Kristian Ullrich <[email protected]> 2022-09-05 12:55:37 +0200;
9a439ce #fixed rcpp warnings by Kristian Ullrich <[email protected]> 2022-07-16 14:48:32 +0200;
822d718 #shorter line by Kristian Ullrich <[email protected]> 2022-07-11 16:52:05 +0200;
0bcfba8 #fixed rcpp indentation Warnings by Kristian Ullrich <[email protected]> 2022-07-11 16:43:56 +0200;
aa09184 #removed unused rand() by Kristian Ullrich <[email protected]> 2022-07-06 12:44:35 +0200;
a9a46d6 #port of KaKs Calculator 2.0 with Rcpp into MSA2dist <a href="#added">#added</a> new codon models to test-dnastring2kaks #changed version <a href="#added">#added</a> new codon models references by Kristian Ullrich <[email protected]> 2022-07-06 10:49:06 +0200;
4d5aedd <a href="#added">#added</a> cds2codonaln by Kristian Ullrich <[email protected]> 2022-06-30 14:17:50 +0200;
cdb453a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:20:50 +0000;
007f29b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:20:50 +0000;
42d3c4f #fix RcppThread::LdFlags warning by Kristian Ullrich <[email protected]> 2022-03-18 09:19:24 +0100;
a7cdd79 #minor fix of URL in description by Kristian Ullrich <[email protected]> 2022-01-27 21:21:52 +0100;
4e0922e new build by Kristian Ullrich <[email protected]> 2022-01-10 11:40:56 +0100;
6a3ff30 #changed name from distSTRING to MSA2dist <a href="#added">#added</a> accessors by Kristian Ullrich <[email protected]> 2021-12-23 00:24:09 +0100;