@@ -256,8 +256,7 @@ x2 <- CellTracker(

 # Track cell movements using CUSTOM params, show plots

 x3 <- CellTracker(

     tc_obj = ThreeConditions$drug01,

-    import_optiParam_from = x1,

-    lnoise = 6, diameter = 18, 

+    lnoise = 5, diameter = 22, threshold = 6,

     threads = 2, maxDisp = 10,

     show_plots = TRUE)

 ```

@@ -483,13 +482,25 @@ an *MSD* analysis and *Velocity autocorrelation*.

 **Directionality Analysis**. This analysis is performed via the `DiRatio()` 

-function. Results are saved in a *CSV* file.

+function. Results are saved in a *CSV* file. Plots can be generated using the 

+`DiRatioPlot()` function. Plots are saved in a newly created folder with the 

+following extension: `-DR_Results`.

+

 ```{r echo=TRUE, include=TRUE, eval=TRUE}

 ## Directionality

 srmTD <- DiRatio(rmTD, export=TRUE)

+DiRatioPlot(srmTD, export=TRUE)

+```

+

+

+```{r, echo=FALSE, out.width="50%", fig.cap="Controldirectionality"}

+knitr::include_graphics(

+    "Control-DR_Results/Controldirectionality ratio for all cells.jpg")

 ```

+

+

 **Mean Square Displacement**.  The MSD function automatically computes the mean

 square displacements across several sequential time intervals. MSD parameters

 are used to assess the area explored by cells over time. Usually, both the