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\name{NEWS}
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\title{News for Package \pkg{zellkonverter}}
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-\section{Version 1.146.0, Bioconductor 3.30 Release (October 2024)}{
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+\section{Version 1.18.0, Bioconductor 3.31 Release (April 2025)}{
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+ \subsection{New features}{
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+ \itemize{
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+ \item{
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+ Add minimal support for \code{SpatialExperiment} objects to
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+ \code{writeH5AD()} and \code{SCE2AnnData()}. This stores the spatial
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+ coordinates in a \code{obsm} item named "spatial" as expected by the
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+ \bold{squidpy} Python package. (PR from @mcmero)
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+ } |
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+ }} |
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+ \subsection{Major changes}{
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+ \itemize{
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+ \item{
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+ Add environment for \bold{anndata} v0.11.4. This is now the default
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+ environment for the Python reader/writer. |
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+ } |
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+ \item{
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+ Modify \code{SCE2AnnData()} to covert sparse matrices to \code{dgRMatrix}
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+ when they are. This mostly applies to assays and should be more compatible |
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+ with what is expected by Python packages. |
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+ } |
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+ }} |
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+ \subsection{Minor changes}{
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+ \itemize{
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+ \item{
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+ Add a \code{testload} argument to \code{basiliskRun()} calls which may
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+ help with problems creating Python environments |
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+ } |
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+ \item{
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+ Updates to documentation and tests |
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+ } |
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+ }} |
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+ \subsection{Bug fixes}{
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+ \itemize{
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+ \item{
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+ Improve handling of missing row or column names in \code{SCE2AnnData()}
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+ } |
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+ }} |
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+} |
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+ |
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+\section{Version 1.16.0, Bioconductor 3.30 Release (October 2024)}{
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\subsection{Major changes}{
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\itemize{
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\item{
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@@ -30,7 +70,7 @@ |
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} |
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\item{
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Correctly set \code{filepath} in the R reader with reading
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- \code{adata.raw}` with \code{use_hdf5 = TRUE} (PR from @GabrielHoffman)
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+ \code{adata.raw} with \code{use_hdf5 = TRUE} (PR from @GabrielHoffman)
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} |
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}} |
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} |
