TreatmentPatterns: Analyzes Real-World Treatment Patterns of a Study Population of Interest

Computes treatment patterns within a given cohort using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM). As described in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.

Version: 3.1.1
Depends: R (≥ 4.2)
Imports: checkmate, dplyr, stringr, utils, stats, Andromeda, tidyr, R6, sunburstR, networkD3, htmlwidgets, ggplot2, dbplyr, jsonlite
Suggests: knitr, rmarkdown, tibble, testthat (≥ 3.0.0), usethis, Eunomia, CDMConnector, DatabaseConnector (≥ 6.0.0), SqlRender, CohortGenerator, ResultModelManager, webshot2, CirceR, duckdb, DBI, withr, plotly, PaRe
Published: 2025-08-25
DOI: 10.32614/CRAN.package.TreatmentPatterns
Author: Aniek Markus ORCID iD [aut], Maarten van Kessel ORCID iD [cre]
Maintainer: Maarten van Kessel <m.l.vankessel at erasmusmc.nl>
BugReports: https://github.com/darwin-eu/TreatmentPatterns/issues
License: Apache License (≥ 2)
URL: https://github.com/darwin-eu/TreatmentPatterns, https://darwin-eu-dev.github.io/TreatmentPatterns/
NeedsCompilation: no
Language: en-US
Citation: TreatmentPatterns citation info
Materials: README, NEWS
CRAN checks: TreatmentPatterns results

Documentation:

Reference manual: TreatmentPatterns.html , TreatmentPatterns.pdf
Vignettes: Best practices (source, R code)
DefiningCohorts (source, R code)
Computing Pathways (source, R code)
Exporing Results (source, R code)
Evaluating Output (source, R code)
ComputingTreatmentPathways (source, R code)

Downloads:

Package source: TreatmentPatterns_3.1.1.tar.gz
Windows binaries: r-devel: TreatmentPatterns_3.1.1.zip, r-release: TreatmentPatterns_3.1.1.zip, r-oldrel: TreatmentPatterns_3.1.1.zip
macOS binaries: r-release (arm64): TreatmentPatterns_3.1.1.tgz, r-oldrel (arm64): TreatmentPatterns_3.1.1.tgz, r-release (x86_64): TreatmentPatterns_3.1.1.tgz, r-oldrel (x86_64): TreatmentPatterns_3.1.1.tgz
Old sources: TreatmentPatterns archive

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