GNNenrich: a novel method for pathway enrichment analysis based on graph neural network.

Edith Le Floch

Mallek Mziou-Sallami Pierrick Roger Arnaud Gloaguen Claire Dandine-Roulland Thierry Jiogho Ngaho Solène Brohard Kévin Muret Florian Sandron Eric Bonnet Jean-Francois Deleuze Edith Le Floch Vincent Meyer GNNenrich: a novel method for pathway enrichment analysis based on graph neural network. 2025 41 Bioinform. 8 https://doi.org/10.1093/bioinformatics/btaf478 db/journals/bioinformatics/bioinformatics41.html#Mziou-SallamiRG25

Morgane Pierre-Jean Florence Mauger Jean-François Deleuze Edith Le Floch PIntMF: Penalized Integrative Matrix Factorization method for multi-omics data. 900-907 2022 38 Bioinform. 4 https://doi.org/10.1093/bioinformatics/btab786 https://www.wikidata.org/entity/Q114093452 db/journals/bioinformatics/bioinformatics38.html#Pierre-JeanMDF22

Morgane Pierre-Jean Jean-François Deleuze Edith Le Floch Florence Mauger Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration. 2011-2030 2020 21 Briefings Bioinform. 6 https://doi.org/10.1093/bib/bbz138 https://www.wikidata.org/entity/Q91622210 db/journals/bib/bib21.html#Pierre-JeanDFM20

Slim Karkar Arnaud Gloaguen Yann Le Guen Morgane Pierre-Jean Claire Dandine-Roulland Edith Le Floch Cathy Philippe Arthur Tenenhaus Vincent Frouin Multivariate Haplotype Analysis Of 96 Sulci Opening For 15, 612 UK-Biobank Sujects. 392-395 2019 ISBI https://doi.org/10.1109/ISBI.2019.8759497 conf/isbi/2019 db/conf/isbi/isbi2019.html#KarkarGGPDFPTF19 Slim Karkar Yann Le Guen Cathy Philippe Claire Dandine-Roulland Morgane Pierre-Jean Jean-François Mangin Edith Le Floch Vincent Frouin A study of feasibility for genome-wide haplotype association of complex traits in imaging genetics. 2764-2766 2018 BIBM https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621306 conf/bibm/2018 db/conf/bibm/bibm2018.html#KarkarGPDPMFF18 Elise Larsonneur Jonathan Mercier Nicolas Wiart Edith Le Floch Olivier Delhomme Vincent Meyer Evaluating Workflow Management Systems: A Bioinformatics Use Case. 2773-2775 2018 BIBM https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621141 conf/bibm/2018 db/conf/bibm/bibm2018.html#LarsonneurMWFDM18

Edith Le Floch Vincent Guillemot Vincent Frouin Philippe Pinel Christophe Lalanne Laura Trinchera Arthur Tenenhaus Antonio Moreno Monica Zilbovicius Thomas Bourgeron Stanislas Dehaene Bertrand Thirion Jean-Baptiste Poline Edouard Duchesnay Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares. 11-24 2012 63 NeuroImage 1 https://doi.org/10.1016/j.neuroimage.2012.06.061 https://www.wikidata.org/entity/Q48445658 db/journals/neuroimage/neuroimage63.html#FlochGFPLTTMZBDTPD12

Edith Le Floch Philippe Pinel Arthur Tenenhaus Laura Trinchera Jean-Baptiste Poline Vincent Frouin Edouard Duchesnay Discovering associations in high dimensional imaging-genetics data: A comparison study of dimension reduction and regularisation strategies combined with partial least squares. 1503-1506 2012 ISBI https://doi.org/10.1109/ISBI.2012.6235857 conf/isbi/2012 db/conf/isbi/isbi2012.html#FlochPTTPFD12 Anne-Laure Fouque Pierre Fillard Anne Bargiacchi Arnaud Cachia Monica Zilbovicius Benjamin Thyreau Edith Le Floch Philippe Ciuciu Edouard Duchesnay Voxelwise Multivariate Statistics and Brain-Wide Machine Learning Using the Full Diffusion Tensor. 9-16 2011 MICCAI (2) https://doi.org/10.1007/978-3-642-23629-7_2 https://www.wikidata.org/entity/Q62498789 conf/miccai/2011-2 db/conf/miccai/miccai2011-2.html#FouqueFBCZTFCD11 Anne Bargiacchi Eric Bonnet Thomas Bourgeron Solène Brohard Arnaud Cachia Philippe Ciuciu Claire Dandine-Roulland Stanislas Dehaene Jean-Francois Deleuze Jean-François Deleuze Olivier Delhomme Edouard Duchesnay Pierre Fillard Anne-Laure Fouque Vincent Frouin Arnaud Gloaguen Yann Le Guen Vincent Guillemot Slim Karkar Christophe Lalanne Elise Larsonneur Jean-François Mangin Florence Mauger Jonathan Mercier Vincent Meyer Antonio Moreno Kévin Muret Mallek Mziou-Sallami Thierry Jiogho Ngaho Cathy Philippe Morgane Pierre-Jean Philippe Pinel Jean-Baptiste Poline Pierrick Roger Florian Sandron Arthur Tenenhaus Bertrand Thirion Benjamin Thyreau Laura Trinchera Nicolas Wiart Monica Zilbovicius