Foundation Model-Guided Iteratively Prompting and Pseudo-Labeling for Partially Labeled Medical Image Segmentation.

Yading Yuan Qiaochu Zhao Wei Wei David Horowitz Richard Bakst Yading Yuan Foundation Model-Guided Iteratively Prompting and Pseudo-Labeling for Partially Labeled Medical Image Segmentation. ISBI 2026 1-5 conf/isbi/2026 https://doi.org/10.1109/ISBI61048.2026.11515473 db/conf/isbi/isbi2026.html#ZhaoWHBY26 streams/conf/isbi

Qiaochu Zhao Wei Wei David Horowitz Richard Bakst Yading Yuan Foundation Model-guided Iteratively Prompting and Pseudo-Labeling for Partially Labeled Medical Image Segmentation. 2026 April abs/2604.01038 CoRR https://doi.org/10.48550/arXiv.2604.01038 db/journals/corr/corr2604.html#abs-2604-01038 streams/journals/corr

Jingyun Chen Yading Yuan Decentralized Personalization for Federated Medical Image Segmentation via Gossip Contrastive Mutual Learning. 2768-2783 2025 July 44 IEEE Trans. Medical Imaging 7 https://doi.org/10.1109/TMI.2025.3549292 db/journals/tmi/tmi44.html#ChenY25 streams/journals/tmi

Wangyu Feng Likun Xia Yading Yuan Ming Ma SparseMambaVision: Sparse-Attention Based Mamba-Transformer Framework for Prostate Segmentation. 827-834 2025 ECAI https://doi.org/10.3233/FAIA250885 conf/ecai/2025 db/conf/ecai/ecai2025.html#FengXYM25 Nikkat Afrin Mohammadzubair Khan Likun Xia Yading Yuan Ming Ma SigmaCam: Exact Decision Boundary Extraction for DNNs with Smooth Nonlinearities. 1-10 2025 IJCNN https://doi.org/10.1109/IJCNN64981.2025.11227622 conf/ijcnn/2025 db/conf/ijcnn/ijcnn2025.html#AfrinKXYM25 streams/conf/ijcnn Ashish Beary Likun Xia Yading Yuan Honggang Wang 0001 Ming Ma 0004 Medical Text and Image Reasoning for Radiation Oncology via Large Language Model. 1-4 2025 ISBI https://doi.org/10.1109/ISBI60581.2025.10981179 conf/isbi/2025 db/conf/isbi/isbi2025.html#BearyXYW025

Jingyun Chen Yading Yuan Decentralized Personalization for Federated Medical Image Segmentation via Gossip Contrastive Mutual Learning. 2025 March abs/2503.03883 CoRR https://doi.org/10.48550/arXiv.2503.03883 db/journals/corr/corr2503.html#abs-2503-03883 streams/journals/corr

Everest Yang Ria Vasishtha Luqman K. Dad Lisa A. Kachnic Andrew Hope Eric Wang Xiao Wu Yading Yuan David J. Brenner Igor Shuryak CAST: Time-Varying Treatment Effects with Application to Chemotherapy and Radiotherapy on Head and Neck Squamous Cell Carcinoma. 2025 May abs/2505.06367 CoRR https://doi.org/10.48550/arXiv.2505.06367 db/journals/corr/corr2505.html#abs-2505-06367 streams/journals/corr

Jingyun Chen David Horowitz Yading Yuan Federated prediction for scalable and privacy-preserved knowledge-based planning in radiotherapy. 2025 May abs/2505.14507 CoRR https://doi.org/10.48550/arXiv.2505.14507 db/journals/corr/corr2505.html#abs-2505-14507 streams/journals/corr

Jingyun Chen Yading Yuan Decentralized Gossip Mutual Learning (GML) for automatic head and neck tumor segmentation. 2024 abs/2401.06180 CoRR https://doi.org/10.48550/arXiv.2401.06180 db/journals/corr/corr2401.html#abs-2401-06180

Jingyun Chen Yading Yuan Decentralized Gossip Mutual Learning (GML) for brain tumor segmentation on multi-parametric MRI. 2024 abs/2401.15434 CoRR https://doi.org/10.48550/arXiv.2401.15434 db/journals/corr/corr2401.html#abs-2401-15434

Jingyun Chen Martin King Yading Yuan FedKBP: Federated dose prediction framework for knowledge-based planning in radiation therapy. 2024 abs/2408.10275 CoRR https://doi.org/10.48550/arXiv.2408.10275 db/journals/corr/corr2408.html#abs-2408-10275 streams/journals/corr

Patrick Bilic Patrick Ferdinand Christ Hongwei Li 0004 Eugene Vorontsov Avi Ben-Cohen Georgios Kaissis Adi Szeskin Colin Jacobs Gabriel Efrain Humpire Mamani Gabriel Chartrand Fabian Lohöfer Julian Walter Holch Wieland H. Sommer Felix Hofmann Alexandre Hostettler Naama Lev-Cohain Michal Drozdzal Michal Marianne Amitai Refael Vivanti Jacob Sosna Ivan Ezhov Anjany Sekuboyina Fernando Navarro Florian Kofler Johannes C. Paetzold Suprosanna Shit Xiaobin Hu Jana Lipková Markus Rempfler Marie Piraud Jan Kirschke Benedikt Wiestler Zhiheng Zhang Christian Hülsemeyer Marcel Beetz Florian Ettlinger Michela Antonelli Woong Bae Miriam Bellver Lei Bi 0001 Hao Chen 0011 Grzegorz Chlebus Erik B. Dam Qi Dou 0001 Chi-Wing Fu Bogdan Georgescu Xavier Giró-i-Nieto Felix Grün Xu Han 0009 Pheng-Ann Heng Jürgen Hesser Jan Hendrik Moltz Christian Igel Fabian Isensee Paul Jäger 0002 Fucang Jia Krishna Chaitanya Kaluva Mahendra Khened Ildoo Kim Jae-Hun Kim Sungwoong Kim Simon Kohl Tomasz K. Konopczynski Avinash Kori Ganapathy Krishnamurthi Fan Li Hongchao Li Junbo Li Xiaomeng Li 0001 John S. Lowengrub Jun Ma 0016 Klaus H. Maier-Hein Kevis-Kokitsi Maninis Hans Meine Dorit Merhof Akshay Pai Mathias Perslev Jens Petersen Jordi Pont-Tuset Jin Qi Xiaojuan Qi 0001 Oliver Rippel Karsten Roth Ignacio Sarasua Andrea Schenk Zengming Shen Jordi Torres Christian Wachinger Chunliang Wang Leon Weninger Jianrong Wu Daguang Xu Xiaoping Yang 0001 Simon Chun-Ho Yu Yading Yuan Miao Yue Liping Zhang 0009 Manuel Jorge Cardoso Spyridon Bakas Rickmer Braren Volker Heinemann Christopher Pal An Tang Samuel Kadoury Luc Soler Bram van Ginneken Hayit Greenspan Leo Joskowicz Bjoern H. Menze The Liver Tumor Segmentation Benchmark (LiTS). 102680 2023 84 Medical Image Anal. https://doi.org/10.1016/j.media.2022.102680 db/journals/mia/mia84.html#BilicCLVBKSJMCL23

Valentin Oreiller Vincent Andrearczyk Mario Jreige Sarah Boughdad Hesham Elhalawani Joël Castelli Martin Vallières Simeng Zhu Juanying Xie Ying Peng Andrei Iantsen Mathieu Hatt Yading Yuan Jun Ma 0016 Xiaoping Yang 0001 Chinmay Rao Suraj Pai Kanchan Ghimire Xue Feng 0001 Mohamed A. Naser Clifton D. Fuller Fereshteh Yousefirizi Arman Rahmim Huai Chen Lisheng Wang John O. Prior Adrien Depeursinge Head and neck tumor segmentation in PET/CT: The HECKTOR challenge. 102336 2022 77 Medical Image Anal. https://doi.org/10.1016/j.media.2021.102336 db/journals/mia/mia77.html#OreillerAJBECVZ22

Saba Adabi Tzu-Chi Tzeng Yading Yuan Predicting 3D dose distribution with scale attention network for prostate cancer radiotherapy. 2022 Image-Guided Procedures https://doi.org/10.1117/12.2611769 conf/miigp/2022 db/conf/miigp/miigp2022.html#AdabiTY22 Yading Yuan Evaluating Scale Attention Network for Automatic Brain Tumor Segmentation with Large Multi-parametric MRI Database. 42-53 2021 BrainLes@MICCAI (2) https://doi.org/10.1007/978-3-031-09002-8_4 conf/brainles-ws/2021-2 db/conf/brainles-ws/brainles-ws2021-2.html#Yuan21 Yading Yuan Saba Adabi Xuefeng Wang Automatic Head and Neck Tumor Segmentation and Progression Free Survival Analysis on PET/CT Images. 179-188 2021 HECKTOR@MICCAI https://doi.org/10.1007/978-3-030-98253-9_17 conf/miccai/2021hecktor db/conf/miccai/hecktor2021.html#YuanAW21 Yading Yuan Automatic Brain Tumor Segmentation with Scale Attention Network. 285-294 2020 BrainLes@MICCAI (1) https://doi.org/10.1007/978-3-030-72084-1_26 conf/brainles-ws/2020-1 db/conf/brainles-ws/brainles-ws2020-1.html#Yuan20 Yading Yuan Automatic Head and Neck Tumor Segmentation in PET/CT with Scale Attention Network. 44-52 2020 HECKTOR@MICCAI https://doi.org/10.1007/978-3-030-67194-5_5 conf/miccai/2020hecktor db/conf/miccai/heckto2020.html#Yuan20

Yading Yuan Automatic Brain Tumor Segmentation with Scale Attention Network. 2020 abs/2011.03188 CoRR https://arxiv.org/abs/2011.03188 db/journals/corr/corr2011.html#abs-2011-03188

Yading Yuan Yeh-Chi Lo Improving Dermoscopic Image Segmentation With Enhanced Convolutional-Deconvolutional Networks. 519-526 2019 23 IEEE J. Biomed. Health Informatics 2 https://doi.org/10.1109/JBHI.2017.2787487 https://www.wikidata.org/entity/Q89497487 db/journals/titb/titb23.html#YuanL19

Yading Yuan Ren-Dih Sheu Luke Fu Yeh-Chi Lo A Deep Regression Model for Seed Localization in Prostate Brachytherapy. 385-393 2019 MICCAI (5) https://doi.org/10.1007/978-3-030-32254-0_43 conf/miccai/2019-5 db/conf/miccai/miccai2019-5.html#YuanSFL19

Yading Yuan Ren-Dih Sheu Luke Fu Yeh-Chi Lo A Deep Regression Model for Seed Identification in Prostate Brachytherapy. 2019 abs/1906.10183 CoRR http://arxiv.org/abs/1906.10183 db/journals/corr/corr1906.html#abs-1906-10183

Yading Yuan Ming Chao Yeh-Chi Lo Automatic Skin Lesion Segmentation Using Deep Fully Convolutional Networks With Jaccard Distance. 1876-1886 2017 36 IEEE Trans. Medical Imaging 9 https://doi.org/10.1109/TMI.2017.2695227 https://www.wikidata.org/entity/Q38823354 db/journals/tmi/tmi36.html#YuanCL17

Yading Yuan Ming Chao Yeh-Chi Lo Automatic skin lesion segmentation with fully convolutional-deconvolutional networks. 2017 abs/1703.05165 CoRR http://arxiv.org/abs/1703.05165 db/journals/corr/corr1703.html#YuanCL17

Yading Yuan Yeh-Chi Lo Improving Dermoscopic Image Segmentation with Enhanced Convolutional-Deconvolutional Networks. 2017 abs/1709.09780 CoRR http://arxiv.org/abs/1709.09780 db/journals/corr/corr1709.html#abs-1709-09780

Yading Yuan Hierarchical Convolutional-Deconvolutional Neural Networks for Automatic Liver and Tumor Segmentation. 2017 abs/1710.04540 CoRR http://arxiv.org/abs/1710.04540 db/journals/corr/corr1710.html#abs-1710-04540

Neha Bhooshan Maryellen L. Giger Karen Drukker Yading Yuan Hui Li 0024 Stephanie McCann Gillian Newstead Charlene A. Sennett Performance of Triple-Modality CADx on Breast Cancer Diagnostic Classification. 9-14 2010 Digital Mammography / IWDM https://doi.org/10.1007/978-3-642-13666-5_2 https://www.wikidata.org/entity/Q57393946 conf/mammo/2010 db/conf/mammo/iwdm2010.html#BhooshanGDYLMNS10 Hui Li 0024 Maryellen L. Giger Li Lan Yading Yuan Neha Bhooshan Olufunmilayo I. Olopade Effect of variable gain on computerized texture analysis on digitalized mammograms. 76242C 2010 Computer-Aided Diagnosis https://doi.org/10.1117/12.845321 conf/micad/2010 db/conf/micad/micad2010.html#LiGLYBO10 Hui Li 0024 Maryellen L. Giger Yading Yuan Sanaz A. Jansen Li Lan Neha Bhooshan Gillian M. Newstead Computerized breast parenchymal analysis on DCE-MRI. 72600N 2009 Computer-Aided Diagnosis https://doi.org/10.1117/12.813567 https://www.wikidata.org/entity/Q57393957 conf/micad/2009 db/conf/micad/micad2009.html#LiGYJLBN09 Yading Yuan Maryellen L. Giger Hui Li 0024 Charlene A. Sennett Breast cancer classification with mammography and DCE-MRI. 72600O 2009 Computer-Aided Diagnosis https://doi.org/10.1117/12.813723 https://www.wikidata.org/entity/Q57393955 conf/micad/2009 db/conf/micad/micad2009.html#YuanGLS09 Yading Yuan Maryellen L. Giger Hui Li 0024 Li Lan Charlene A. Sennett Identifying Corresponding Lesions from CC and MLO Views Via Correlative Feature Analysis. 323-328 2008 Digital Mammography / IWDM https://doi.org/10.1007/978-3-540-70538-3_45 https://www.wikidata.org/entity/Q57393978 conf/mammo/2008 db/conf/mammo/iwdm2008.html#YuanGLLS08 Hui Li 0024 Maryellen L. Giger Yading Yuan Li Lan Charlene A. Sennett Performance of CADx on a Large Clinical Database of FFDM Images. 510-514 2008 Digital Mammography / IWDM https://doi.org/10.1007/978-3-540-70538-3_71 https://www.wikidata.org/entity/Q57393981 conf/mammo/2008 db/conf/mammo/iwdm2008.html#LiGYLS08 Yading Yuan Maryellen L. Giger Hui Li 0024 Charlene A. Sennett Correlative feature analysis of FFDM images. 69151L 2008 Computer-Aided Diagnosis https://doi.org/10.1117/12.770524 https://www.wikidata.org/entity/Q57393970 conf/micad/2008 db/conf/micad/micad2008.html#YuanGLS08 Maryellen L. Giger Yading Yuan Hui Li 0024 Karen Drukker Weijie Chen 0007 Li Lan Karla Horsch Progress in Breast Cadx. 508-511 2007 ISBI https://doi.org/10.1109/ISBI.2007.356900 https://www.wikidata.org/entity/Q57394011 conf/isbi/2007 db/conf/isbi/isbi2007.html#GigerYLDCLH07 Hui Li 0024 Maryellen L. Giger Yading Yuan Li Lan Kenji Suzuki 0001 Andrew R. Jamieson Laura Yarusso Robert M. Nishikawa Charlene A. Sennett Comparison of Computerized Image Analyses for Digitized Screen-Film Mammograms and Full-Field Digital Mammography Images. 569-575 2006 conf/mammo/2006 Digital Mammography / IWDM https://doi.org/10.1007/11783237_77 db/conf/mammo/iwdm2006.html#LiGYLSJYNS06 Yading Yuan Maryellen L. Giger Kenji Suzuki 0001 Hui Li 0024 Andrew R. Jamieson A two-stage method for lesion segmentation on digital mammograms. 61443W 2006 Image Processing https://doi.org/10.1117/12.652840 https://www.wikidata.org/entity/Q57394020 conf/miip/2006 db/conf/miip/miip2006.html#YuanGSLJ06 Saba Adabi Nikkat Afrin Michal AmitaiMichal Marianne Amitai Vincent Andrearczyk Michela Antonelli Woong Bae Spyridon Bakas Richard Bakst Ashish Beary Marcel Beetz Miriam Bellver Avi Ben-Cohen Neha Bhooshan Lei Bi 0001 Patrick Bilic Sarah Boughdad Rickmer Braren David J. Brenner Manuel Jorge Cardoso Joël Castelli Ming Chao Gabriel Chartrand Hao Chen 0011 Huai Chen Jingyun Chen Weijie Chen 0007 Grzegorz Chlebus Patrick Ferdinand Christ Luqman K. Dad Erik DamErik B. Dam Adrien Depeursinge Qi Dou 0001 Michal Drozdzal Karen Drukker Hesham Elhalawani Florian Ettlinger Ivan Ezhov Wangyu Feng Xue Feng 0001 Chi-Wing Fu Luke Fu Clifton D. Fuller Bogdan Georgescu Kanchan Ghimire Maryellen L. Giger Bram van Ginneken Xavier Giró-i-Nieto Hayit Greenspan Felix Grün Xu Han 0009 Mathieu Hatt Volker Heinemann Pheng-Ann Heng Jürgen Hesser Felix Hofmann Julian Walter Holch Andrew Hope David Horowitz Karla Horsch Alexandre Hostettler Xiaobin Hu Christian Hülsemeyer Andrei Iantsen Christian Igel Fabian Isensee Colin Jacobs Paul F. JaegerPaul Jäger 0002 Andrew R. Jamieson Sanaz JansenSanaz A. Jansen Fucang Jia Leo Joskowicz Mario Jreige Lisa A. Kachnic Samuel Kadoury Georgios Kaissis Krishna Chaitanya Kaluva Mohammadzubair Khan Mahendra Khened Ildoo Kim Jae-Hun Kim Sungwoong Kim Martin King Jan Kirschke Florian Kofler Simon Kohl Tomasz K. Konopczynski Avinash Kori Ganapathy Krishnamurthi Li Lan Naama Lev-Cohain Fan Li Hongchao Li Hongwei Li 0004 Hui Li 0024 Junbo Li Xiaomeng Li 0001 Jana Lipková Yeh-Chi Lo Fabian Lohöfer John S. Lowengrub Jun Ma 0016 Ming Ma Ming Ma 0004 Klaus H. Maier-Hein Gabriel Efrain Humpire Mamani Kevis-Kokitsi Maninis Stephanie McCann Hans Meine Bjoern MenzeBjoern H. Menze Dorit Merhof Jan Hendrik Moltz Mohamed A. Naser Fernando Navarro Gillian NewsteadGillian M. Newstead Robert M. Nishikawa Olufunmilayo I. Olopade Valentin Oreiller Johannes C. Paetzold Akshay Pai Suraj Pai Christopher Joseph PalChristopher Pal Ying Peng Mathias Perslev Jens Petersen Marie Piraud Jordi Pont-Tuset John O. Prior Jin Qi Xiaojuan Qi 0001 Arman Rahmim Chinmay Rao Markus Rempfler Oliver Rippel Fereshteh Yousefi RiziFereshteh Yousefirizi Karsten Roth Ignacio Sarasua Andrea Schenk Anjany Sekuboyina Charlene A. Sennett Zengming Shen Ren-Dih Sheu Suprosanna Shit Igor Shuryak Luc Soler Wieland H. Sommer Jacob Sosna Kenji Suzuki 0001 Adi Szeskin An Tang Jordi Torres Tzu-Chi Tzeng Martin Vallières Ria Vasishtha Refael Vivanti Eugene Vorontsov Christian Wachinger Chunliang Wang Eric Wang Honggang Wang 0001 Lisheng Wang Xuefeng Wang Wei Wei Leon Weninger Benedikt Wiestler Jianrong Wu Xiao Wu Likun Xia Juanying Xie Daguang Xu Everest Yang Xiaoping Yang 0001 Laura Yarusso Simon C. H. YuSimon Chun-Ho Yu Miao Yue Liping Zhang 0009 Zhiheng Zhang Qiaochu Zhao Simeng Zhu