MoMo - Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes.

David A. Bader New Jersey Institute of Technology, Newark, NJ, USA Georgia Institute of Technology, Atlanta, GA, USA http://www.cs.njit.edu/~bader/ https://www.acm.org/articles/people-of-acm/2022/david-a-bader https://scholar.google.com/citations?user=uXUA1pgAAAAJ https://dl.acm.org/profile/81100165442 https://zbmath.org/authors/?q=ai:bader.david-a https://mathscinet.ams.org/mathscinet/MRAuthorID/640455 https://mathgenealogy.org/id.php?id=164586 https://en.wikipedia.org/wiki/David_Bader_(computer_scientist) https://twitter.com/prof_davidbader https://orcid.org/0000-0002-7380-5876 https://www.wikidata.org/entity/Q5230435 https://id.loc.gov/authorities/names/no97039494 https://d-nb.info/gnd/130636584

M. Shewarega Jakob Troidl Oliver Alvarado Rodriguez Mohammad Dindoost Philipp Harth H. Haberkern J. Stegmaier David A. Bader Hanspeter Pfister MoMo - Combining Neuron Morphology and Connectivity for Interactive Motif Analysis in Connectomes. 2026 January 1164-1174 32 IEEE Trans. Vis. Comput. Graph. 1 https://doi.org/10.1109/TVCG.2025.3634808 db/journals/tvcg/tvcg32.html#ShewaregaTRDHHSBP26 streams/journals/tvcg

Subhodeep Ghosh Zhihui Du Angela Bonifati Manish Kumar 0011 David A. Bader Senjuti Basu Roy Continuous Fairness On Data Streams. 2026 January abs/2601.08976 CoRR https://doi.org/10.48550/arXiv.2601.08976 db/journals/corr/corr2601.html#abs-2601-08976 streams/journals/corr

David A. Bader Linux and High-Performance Computing. 2026 March abs/2603.22495 CoRR https://doi.org/10.48550/arXiv.2603.22495 db/journals/corr/corr2603.html#abs-2603-22495 streams/journals/corr

David A. Bader Fuhuan Li Zhihui Du Palina Pauliuchenka Oliver Alvarado Rodriguez Anant Gupta Sai Sri Vastav Minnal Valmik Nahata Anya Ganeshan Ahmet Gündogdu Jason Lew Cover Edge-Based Novel Triangle Counting. 685 2025 18 Algorithms 11 https://doi.org/10.3390/a18110685 db/journals/algorithms/algorithms18.html#BaderLDPRGMNGGL25 streams/journals/algorithms

David A. Bader Justin Ellis-Joyce Gert-Jan Both Srinivas C. Turaga Harinarayan Asoori Sriram Srijith Chinthalapudi Zhihui Du Rocket-crane algorithm for the Feedback Arc Set problem. 68 2025 December 15 Soc. Netw. Anal. Min. 1 https://doi.org/10.1007/s13278-025-01491-2 db/journals/snam/snam15.html#BaderEBTSCD25 streams/journals/snam

Jeffrey Spaan Kuan-Hsun Chen David A. Bader Ana Lucia Varbanescu Wedge-Parallel Triangle Counting for GPUs. 3-17 2025 Euro-Par (3) https://doi.org/10.1007/978-3-031-99872-0_1 conf/europar/2025-3 db/conf/europar/europar2025-3.html#SpaanCBV25 streams/conf/europar Mohammad Dindoost Oliver Alvarado Rodriguez Bartosz Bryg Ioannis Koutis David A. Bader HiPerMotif: Novel Parallel Subgraph Isomorphism in Large-Scale Property Graphs. 1-7 2025 HPEC https://doi.org/10.1109/HPEC67600.2025.11196090 conf/hpec/2025 db/conf/hpec/hpec2025.html#DindoostRBKB25 streams/conf/hpec Fuhuan Li Zhihui Du David A. Bader Designing Parallel Algorithms for Community Detection using Arachne. 1-7 2025 HPEC https://doi.org/10.1109/HPEC67600.2025.11196647 conf/hpec/2025 db/conf/hpec/hpec2025.html#LiDB25 streams/conf/hpec Atieh Barati Nia Mohammad Dindoost David A. Bader Evaluating Efficiency and Novelty of LLM-Generated Code for Graph Analysis. 1-7 2025 HPEC https://doi.org/10.1109/HPEC67600.2025.11196094 conf/hpec/2025 db/conf/hpec/hpec2025.html#NiaDB25 streams/conf/hpec Jeffrey Spaan Kuan-Hsun Chen David A. Bader Ana Lucia Varbanescu Artifact of the paper: Wedge-Parallel Triangle Counting for GPUs. 2025 June https://doi.org/10.5281/zenodo.15611508 Zenodo streams/repo/zenodo data/11/SpaanCBV25b Jeffrey Spaan Kuan-Hsun Chen David A. Bader Ana Lucia Varbanescu Artifact of the paper: Wedge-Parallel Triangle Counting for GPUs. 2025 June https://doi.org/10.5281/zenodo.15632487 Zenodo streams/repo/zenodo data/11/SpaanCBV25b

Mohammad Dindoost Oliver Alvarado Rodriguez Bartosz Bryg Ioannis Koutis David A. Bader HiPerMotif: Novel Parallel Subgraph Isomorphism in Large-Scale Property Graphs. 2025 July abs/2507.04130 CoRR https://doi.org/10.48550/arXiv.2507.04130 db/journals/corr/corr2507.html#abs-2507-04130 streams/journals/corr

Atieh Barati Nia Mohammad Dindoost David A. Bader Evaluating Efficiency and Novelty of LLM-Generated Code for Graph Analysis. 2025 July abs/2507.06463 CoRR https://doi.org/10.48550/arXiv.2507.06463 db/journals/corr/corr2507.html#abs-2507-06463 streams/journals/corr

Fuhuan Li Zhihui Du David A. Bader Designing Parallel Algorithms for Community Detection using Arachne. 2025 July abs/2507.06471 CoRR https://doi.org/10.48550/arXiv.2507.06471 db/journals/corr/corr2507.html#abs-2507-06471 streams/journals/corr

Mohammad Dindoost Oliver Alvarado Rodriguez Bartosz Bryg Minhyuk Park George Chacko Tandy J. Warnow David A. Bader On the Optimization of Methods for Establishing Well-Connected Communities. 2025 September abs/2509.02590 CoRR https://doi.org/10.48550/arXiv.2509.02590 db/journals/corr/corr2509.html#abs-2509-02590 streams/journals/corr

Vikram Ramavarapu João Alfredo Cardoso Lamy Mohammad Dindoost David A. Bader Large Scale Community-Aware Network Generation. 2025 November abs/2511.19717 CoRR https://doi.org/10.48550/arXiv.2511.19717 db/journals/corr/corr2511.html#abs-2511-19717 streams/journals/corr

Fernando Vera Buschmann Zhihui Du David A. Bader Enhanced Knowledge Graph Attention Networks for Efficient Graph Learning. 1-7 2024 HPEC https://doi.org/10.1109/HPEC62836.2024.10938526 conf/hpec/2024 db/conf/hpec/hpec2024.html#BuschmannDB24 Mohammad Dindoost Oliver Alvarado Rodriguez Sounak Bagchi Palina Pauliuchenka Zhihui Du David A. Bader VF2-PS: Parallel and Scalable Subgraph Monomorphism in Arachne. 1-9 2024 HPEC https://doi.org/10.1109/HPEC62836.2024.10938454 conf/hpec/2024 db/conf/hpec/hpec2024.html#DindoostRBPDB24 Garrett Gonzalez-Rivas Zhihui Du David A. Bader A Deployment Tool for Large Scale Graph Analytics Framework Arachne. 1-7 2024 HPEC https://doi.org/10.1109/HPEC62836.2024.10938515 conf/hpec/2024 db/conf/hpec/hpec2024.html#Gonzalez-RivasD24 Fernando Vera Buschmann Palina Pauliuchenka Ethan Oh Bai Chien Kao Louis DiValentin David A. Bader Graph-Based Profiling of Dependency Vulnerability Remediation. 138-157 2024 SciSec https://doi.org/10.1007/978-981-96-2417-1_8 conf/scisec/2024 db/conf/scisec/scisec2024.html#BuschmannPOKDB24 streams/conf/scisec

David A. Bader Fuhuan Li Zhihui Du Palina Pauliuchenka Oliver Alvarado Rodriguez Anant Gupta Sai Sri Vastav Minnal Valmik Nahata Anya Ganeshan Ahmet Gündogdu Jason Lew Cover Edge-Based Novel Triangle Counting. 2024 abs/2403.02997 CoRR https://doi.org/10.48550/arXiv.2403.02997 db/journals/corr/corr2403.html#abs-2403-02997

Fernando Vera Palina Pauliuchenka Ethan Oh Bai Chien Kao Louis DiValentin David A. Bader Profile of Vulnerability Remediations in Dependencies Using Graph Analysis. 2024 abs/2403.04989 CoRR https://doi.org/10.48550/arXiv.2403.04989 db/journals/corr/corr2403.html#abs-2403-04989

Zhihui Du Sen Zhang 0007 David A. Bader Tunnel: Parallel-inducing sort for large string analytics. 650-663 2023 December 149 Future Gener. Comput. Syst. https://doi.org/10.1016/j.future.2023.08.009 db/journals/fgcs/fgcs149.html#DuZB23

Ivan Hendy Goenawan Zhihui Du Chao Wu Yankui Sun Jianyan Wei David A. Bader Dynamics signature based anomaly detection. 160-175 2023 53 Softw. Pract. Exp. 1 https://doi.org/10.1002/spe.3052 db/journals/spe/spe53.html#GoenawanDWSWB23

Chen Yang 0009 Zhihui Du Xiaofeng Meng 0001 Xukang Zhang Xinli Hao David A. Bader Anomaly Detection in Catalog Streams. 294-311 2023 February 9 IEEE Trans. Big Data 1 https://doi.org/10.1109/TBDATA.2022.3161925 db/journals/tbd/tbd9.html#YangDMZHB23

Zhihui Du Oliver Alvarado Rodriguez Fuhuan Li Mohammad Dindoost David A. Bader Contour Algorithm for Connectivity. 66-75 2023 HiPC https://doi.org/10.1109/HiPC58850.2023.00022 conf/hipc/2023 db/conf/hipc/hipc2023.html#DuRLDB23 David A. Bader Fast Triangle Counting. 1-6 2023 HPEC https://doi.org/10.1109/HPEC58863.2023.10363539 conf/hpec/2023 db/conf/hpec/hpec2023.html#Bader23 David A. Bader Fuhuan Li Anya Ganeshan Ahmet Gündogdu Jason Lew Oliver Alvarado Rodriguez Zhihui Du Triangle Counting Through Cover-Edges. 1-7 2023 HPEC https://doi.org/10.1109/HPEC58863.2023.10363465 conf/hpec/2023 db/conf/hpec/hpec2023.html#BaderLGGLRD23 Oliver Alvarado Rodriguez Fernando Vera Buschmann Zhihui Du David A. Bader Property Graphs in Arachne. 1-7 2023 HPEC https://doi.org/10.1109/HPEC58863.2023.10363498 conf/hpec/2023 db/conf/hpec/hpec2023.html#RodriguezBDB23 Soroush Vahidi Baruch Schieber Zhihui Du David A. Bader Parallel Longest Common SubSequence Analysis In Chapel. 1-6 2023 HPEC https://doi.org/10.1109/HPEC58863.2023.10363472 conf/hpec/2023 db/conf/hpec/hpec2023.html#VahidiSDB23 Luca Cappelletti Tommaso Fontana Oded Green David A. Bader Parallel Triangles and Squares Count for Multigraphs Using Vertex Covers. 635-646 2023 ICCS (4) https://doi.org/10.1007/978-3-031-36027-5_50 conf/iccS/2023-4 db/conf/iccS/iccS2023-4.html#CappellettiFGB23 Luca Cappelletti Tommaso Fontana Justin T. Reese David A. Bader Billion-scale Detection of Isomorphic Nodes. 230-233 2023 IPDPS Workshops https://doi.org/10.1109/IPDPSW59300.2023.00046 conf/ipps/2023w db/conf/ipps/ipdps2023w.html#CappellettiFRB23

David A. Bader Fast Triangle Counting. 2023 abs/2309.09064 CoRR https://doi.org/10.48550/arXiv.2309.09064 db/journals/corr/corr2309.html#abs-2309-09064

Soroush Vahidi Baruch Schieber Zhihui Du David A. Bader Parallel Longest Common SubSequence Analysis In Chapel. 2023 abs/2309.09072 CoRR https://doi.org/10.48550/arXiv.2309.09072 db/journals/corr/corr2309.html#abs-2309-09072

Oliver Alvarado Rodriguez Fernando Vera Buschmann Zhihui Du David A. Bader Property Graphs in Arachne. 2023 abs/2309.09943 CoRR https://doi.org/10.48550/arXiv.2309.09943 db/journals/corr/corr2309.html#abs-2309-09943

Zhihui Du Oliver Alvarado Rodriguez Fuhuan Li Mohammad Dindoost David A. Bader Contour Algorithm for Connectivity. 2023 abs/2311.02811 CoRR https://doi.org/10.48550/arXiv.2311.02811 db/journals/corr/corr2311.html#abs-2311-02811

Matthew R. Norman David A. Bader Christopher Eldred Walter M. Hannah Benjamin R. Hillman Christopher R. Jones Jungmin M. Lee L. Ruby Leung Isaac Lyngaas Kyle G. Pressel Sarat Sreepathi Mark A. Taylor Xingqiu Yuan Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF's summit supercomputer. 93-105 2022 36 Int. J. High Perform. Comput. Appl. 1 https://doi.org/10.1177/10943420211027539 db/journals/ijhpca/ijhpca36.html#NormanBEHHJLLLP22

Alexander van der Grinten Elisabetta Bergamini Oded Green David A. Bader Henning Meyerhenke Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. 1.7:1-1.7:16 2022 27 ACM J. Exp. Algorithmics https://doi.org/10.1145/3524615 db/journals/jea/jea27.html#GrintenBGBM22

David A. Bader Paul Burkhardt A Simple and Efficient Algorithm for Finding Minimum Spanning Tree Replacement Edges. 577-588 2022 26 J. Graph Algorithms Appl. 1 https://doi.org/10.7155/jgaa.00609 db/journals/jgaa/jgaa26.html#BaderB22

Zhihui Du Joseph Patchett Oliver Alvarado Rodriguez Fuhuan Li David A. Bader High-Performance Truss Analytics in Arkouda. 105-114 2022 HIPC https://doi.org/10.1109/HiPC56025.2022.00026 conf/hipc/2022 db/conf/hipc/hipc2022.html#DuPRLB22 Zhihui Du Sen Zhang 0007 David A. Bader Parallel Suffix Sorting for Large String Analytics. 71-82 2022 PPAM (1) https://doi.org/10.1007/978-3-031-30442-2_6 conf/ppam/2022-1 db/conf/ppam/ppam2022-1.html#DuZB22 Jeremy Kepner Peter Aaltonen David A. Bader Aydin Buluç Franz Franchetti John Gilbert 0001 Shana Hutchison Manoj Kumar 0006 Andrew Lumsdaine Henning Meyerhenke Scott McMillan José E. Moreira John D. Owens Carl Yang 0002 Marcin Zalewski Timothy G. Mattson Introduction to GraphBLAS. 507-524 2022 Massive Graph Analytics https://doi.org/10.1201/9781003033707-24 books/crc/22/B2022 db/books/collections/B2022.html#KepnerABBF0H0LMMMOYZM22 Zhihui Du Oliver Alvarado Rodriguez Joseph Patchett David A. Bader Interactive Graph Analytics at Scale in Arkouda. 549-589 2022 Massive Graph Analytics https://doi.org/10.1201/9781003033707-26 books/crc/22/B2022 db/books/collections/B2022.html#DuRPB22 David A. Bader Massive Graph Analytics Chapman and Hall/CRC 2022 9781003033707 db/books/collections/B2022.html https://doi.org/10.1201/9781003033707

David A. Bader Fuhuan Li Anya Ganeshan Ahmet Gündogdu Jason Lew Oliver Alvarado Rodriguez Zhihui Du A Novel Parallel Triangle Counting Algorithm with Reduced Communication. 2022 abs/2210.00389 CoRR https://doi.org/10.48550/arXiv.2210.00389 db/journals/corr/corr2210.html#abs-2210-00389

Zhihui Du Oliver Alvarado Rodriguez Joseph Patchett David A. Bader Interactive Graph Stream Analytics in Arkouda. 221 2021 14 Algorithms 8 https://doi.org/10.3390/a14080221 db/journals/algorithms/algorithms14.html#DuRPB21

David A. Bader Linux and Supercomputing: How My Passion for Building COTS Systems Led to an HPC Revolution. 73-80 2021 43 IEEE Ann. Hist. Comput. 3 https://doi.org/10.1109/MAHC.2021.3101415 db/journals/annals/annals43.html#BaderM21

David A. Bader Interactive data science at scale. 210 2021 CF https://doi.org/10.1145/3457388.3459985 conf/cf/2021 db/conf/cf/cf2021.html#Bader21 Oded Green Zhihui Du Sanyamee Patel Zehui Xie Hang Liu David A. Bader Anti-Section Transitive Closure. 192-201 2021 HiPC https://doi.org/10.1109/HiPC53243.2021.00033 conf/hipc/2021 db/conf/hipc/hipc2021.html#GreenDPXLB21 Zhihui Du Oliver Alvarado Rodriguez David A. Bader Large Scale String Analytics in Arkouda. 1-7 2021 HPEC https://doi.org/10.1109/HPEC49654.2021.9622810 conf/hpec/2021 db/conf/hpec/hpec2021.html#DuRB21 Zhihui Du Oliver Alvarado Rodriguez David A. Bader Enabling Exploratory Large Scale Graph Analytics through Arkouda. 1-7 2021 HPEC https://doi.org/10.1109/HPEC49654.2021.9622860 conf/hpec/2021 db/conf/hpec/hpec2021.html#DuRB21a Fuhuan Li David A. Bader A GraphBLAS Implementation of Triangle Centrality. 1-2 2021 HPEC https://doi.org/10.1109/HPEC49654.2021.9622806 conf/hpec/2021 db/conf/hpec/hpec2021.html#LiB21 Gábor Szárnyas David A. Bader Timothy A. Davis 0001 James Kitchen Timothy G. Mattson Scott McMillan Erik Welch LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. 243-252 2021 IPDPS Workshops https://doi.org/10.1109/IPDPSW52791.2021.00046 conf/ipps/2021w db/conf/ipps/ipdps2021w.html#SzarnyasB0KMMW21

Gábor Szárnyas David A. Bader Timothy A. Davis 0001 James Kitchen Timothy G. Mattson Scott McMillan Erik Welch LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. 2021 abs/2104.01661 CoRR https://arxiv.org/abs/2104.01661 db/journals/corr/corr2104.html#abs-2104-01661

Prasun Gera Hyojong Kim Piyush Sao Hyesoon Kim David A. Bader Traversing Large Graphs on GPUs with Unified Memory. 1119-1133 2020 13 Proc. VLDB Endow. 7 http://www.vldb.org/pvldb/vol13/p1119-gera.pdf https://doi.org/10.14778/3384345.3384358 db/journals/pvldb/pvldb13.html#GeraKSKB20

Zhihui Du Sen Zhang 0007 David A. Bader Jingkun Hu An Efficient LP Rounding Scheme for Replica Placement. 1-7 2020 HPEC https://doi.org/10.1109/HPEC43674.2020.9286163 conf/hpec/2020 db/conf/hpec/hpec2020.html#DuZBH20 Todd Hricik David A. Bader Oded Green Using RAPIDS AI to Accelerate Graph Data Science Workflows. 1-4 2020 HPEC https://doi.org/10.1109/HPEC43674.2020.9286224 conf/hpec/2020 db/conf/hpec/hpec2020.html#HricikBG20 Austin Chase Minor Zhihui Du Yankui Sun David A. Bader Chao Wu Jianyan Wei GPU Accelerated Anomaly Detection of Large Scale Light Curves. 1-7 2020 HPEC https://doi.org/10.1109/HPEC43674.2020.9286242 conf/hpec/2020 db/conf/hpec/hpec2020.html#MinorDSBWW20 Jingkun Hu Zhihui Du Sen Zhang 0007 David A. Bader QoS-Aware and Fault-Tolerant Replica Placement. 157-172 2020 ICA3PP (2) https://doi.org/10.1007/978-3-030-60239-0_11 conf/ica3pp/2020-2 db/conf/ica3pp/ica3pp2020-2.html#HuDZB20 Bartley Richardson Bradley Rees Tom Drabas Even Oldridge David A. Bader Rachel Allen Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS. 3503-3504 2020 KDD https://doi.org/10.1145/3394486.3406702 conf/kdd/2020 db/conf/kdd/kdd2020.html#RichardsonRDOBA20

Lluís-Miquel Munguía Shabbir Ahmed 0001 David A. Bader George L. Nemhauser Yufen Shao Dimitri J. Papageorgiou Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing. 21-34 2019 111 Comput. Oper. Res. https://doi.org/10.1016/j.cor.2019.05.031 https://www.wikidata.org/entity/Q127761229 db/journals/cor/cor111.html#MunguiaABNSP19

David A. Bader Editorial from the Editor-in-Chief. 1:1-1:2 2019 6 ACM Trans. Parallel Comput. 1 https://doi.org/10.1145/3325883 db/journals/topc/topc6.html#Bader19

Xiaojing An Kasimir Gabert James Fox Oded Green David A. Bader Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems. 1-7 2019 HPEC https://doi.org/10.1109/HPEC.2019.8916307 conf/hpec/2019 db/conf/hpec/hpec2019.html#AnGFGB19 Oded Green James Fox Jeffrey Young 0001 Jun Shirako David A. Bader Performance Impact of Memory Channels on Sparse and Irregular Algorithms. 67-70 2019 IA3@SC https://doi.org/10.1109/IA349570.2019.00016 conf/sc/2019ia3 db/conf/sc/ia3-2019.html#GreenFYSB19

David A. Bader Paul Burkhardt A Linear Time Algorithm for Finding Minimum Spanning Tree Replacement Edges. 2019 abs/1908.03473 CoRR http://arxiv.org/abs/1908.03473 db/journals/corr/corr1908.html#abs-1908-03473

Oded Green James Fox Jeffrey Young 0001 Jun Shirako David A. Bader Performance Impact of Memory Channels on Sparse and Irregular Algorithms. 2019 abs/1910.03679 CoRR http://arxiv.org/abs/1910.03679 db/journals/corr/corr1910.html#abs-1910-03679

Adam McLaughlin David A. Bader Accelerating GPU betweenness centrality. 85-92 2018 61 Commun. ACM 8 https://doi.org/10.1145/3230485 db/journals/cacm/cacm61.html#McLaughlinB18

Lluís-Miquel Munguía Shabbir Ahmed 0001 David A. Bader George L. Nemhauser Yufen Shao Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs. 1-24 2018 69 Comput. Optim. Appl. 1 https://doi.org/10.1007/s10589-017-9934-5 db/journals/coap/coap69.html#MunguiaABNS18

Eisha Nathan Geoffrey Sanders Van Emden Henson David A. Bader Numerically approximating centrality for graph ranking guarantees. 205-216 2018 26 J. Comput. Sci. https://doi.org/10.1016/j.jocs.2018.02.010 https://www.wikidata.org/entity/Q130195773 db/journals/jocs/jocs26.html#NathanSEB18

Eisha Nathan David A. Bader Incrementally updating Katz centrality in dynamic graphs. 26 2018 8 Soc. Netw. Anal. Min. 1 https://doi.org/10.1007/s13278-018-0504-3 https://www.wikidata.org/entity/Q130027168 db/journals/snam/snam8.html#NathanB18

Alexander van der Grinten Elisabetta Bergamini Oded Green David A. Bader Henning Meyerhenke Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. 42:1-42:14 2018 ESA https://doi.org/10.4230/LIPIcs.ESA.2018.42 conf/esa/2018 db/conf/esa/esa2018.html#GrintenBGBM18 Federico Busato Oded Green Nicola Bombieri David A. Bader Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs. 1-7 2018 HPEC https://doi.org/10.1109/HPEC.2018.8547541 conf/hpec/2018 db/conf/hpec/hpec2018.html#BusatoGBB18 James Fox Oded Green Kasimir Gabert Xiaojing An David A. Bader Fast and Adaptive List Intersections on the GPU. 1-7 2018 HPEC https://doi.org/10.1109/HPEC.2018.8547759 conf/hpec/2018 db/conf/hpec/hpec2018.html#FoxGGAB18 Oded Green James Fox Alex Watkins Alok Tripathy Kasimir Gabert Euna Kim Xiaojing An Kumar Aatish David A. Bader Logarithmic Radix Binning and Vectorized Triangle Counting. 1-7 2018 HPEC https://doi.org/10.1109/HPEC.2018.8547581 conf/hpec/2018 db/conf/hpec/hpec2018.html#GreenFWTGKAAB18 Srinivas Aluru David A. Bader Paul Medvedev Introduction to HiCOMB 2018. 226 2018 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2018.00044 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2018.00044 conf/ipps/2018w db/conf/ipps/ipdps2018w.html#AluruBM18 David A. Bader Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications. 193 2018 SPAA https://doi.org/10.1145/3210377.3210379 conf/spaa/2018 db/conf/spaa/spaa2018.html#Bader18 David A. Bader Andrea Kappes Henning Meyerhenke Peter Sanders 0001 Christian Schulz 0003 Dorothea Wagner Benchmarking for Graph Clustering and Partitioning. 2018 Encyclopedia of Social Network Analysis and Mining. 2nd Ed. https://doi.org/10.1007/978-1-4939-7131-2_23 reference/snam/2018 db/reference/snam/snam2018.html#BaderKM00W18

Alexander van der Grinten Elisabetta Bergamini Oded Green David A. Bader Henning Meyerhenke Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. 2018 abs/1807.03847 CoRR http://arxiv.org/abs/1807.03847 db/journals/corr/corr1807.html#abs-1807-03847

Eisha Nathan Anita Zakrzewska E. Jason Riedy David A. Bader Local Community Detection in Dynamic Graphs Using Personalized Centrality. 102 2017 10 Algorithms 3 https://doi.org/10.3390/a10030102 db/journals/algorithms/algorithms10.html#NathanZRB17

James P. Fairbanks David A. Bader Geoffrey D. Sanders Spectral partitioning with blends of eigenvectors. 551-580 2017 5 J. Complex Networks 4 https://doi.org/10.1093/comnet/cnw033 db/journals/compnet/compnet5.html#FairbanksBS17

Lluís-Miquel Munguía Shabbir Ahmed 0001 David A. Bader George L. Nemhauser Vikas Goel Yufen Shao A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem. 44-57 2017 77 Comput. Oper. Res. https://doi.org/10.1016/j.cor.2016.07.016 db/journals/cor/cor77.html#MunguiaABNGS17

Yang You 0001 Haohuan Fu David A. Bader Guangwen Yang 0002 Designing and implementing a heuristic cross-architecture combination for graph traversal. 95-105 2017 108 J. Parallel Distributed Comput. https://doi.org/10.1016/j.jpdc.2016.05.007 db/journals/jpdc/jpdc108.html#YouFBY17

Zhihui Du Rong Ge 0002 Victor W. Lee Richard W. Vuduc David A. Bader Ligang He Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems. 8686971:1-8686971:13 2017 2017 Sci. Program. https://doi.org/10.1155/2017/8686971 https://www.wikidata.org/entity/Q59503929 db/journals/sp/sp2017.html#DuGLVBH17

David A. Bader Editor's Note. 1 2017 28 IEEE Trans. Parallel Distributed Syst. 1 https://doi.org/10.1109/TPDS.2016.2626538 http://doi.ieeecomputersociety.org/10.1109/TPDS.2016.2626538 db/journals/tpds/tpds28.html#Bader17

David A. Bader Editor's Note. 3328-3329 2017 28 IEEE Trans. Parallel Distributed Syst. 12 https://doi.org/10.1109/TPDS.2017.2765218 http://doi.ieeecomputersociety.org/10.1109/TPDS.2017.2765218 https://www.wikidata.org/entity/Q59503928 db/journals/tpds/tpds28.html#Bader17a

Eisha Nathan David A. Bader A Dynamic Algorithm for Updating Katz Centrality in Graphs. 149-154 2017 ASONAM https://doi.org/10.1145/3110025.3110034 conf/asunam/2017 db/conf/asunam/asonam2017.html#NathanB17 Anita Zakrzewska David A. Bader Streaming Graph Sampling with Size Restrictions. 282-290 2017 ASONAM https://doi.org/10.1145/3110025.3110058 conf/asunam/2017 db/conf/asunam/asonam2017.html#ZakrzewskaB17 Eisha Nathan James P. Fairbanks David A. Bader Ranking in Dynamic Graphs Using Exponential Centrality. 378-389 2017 COMPLEX NETWORKS https://doi.org/10.1007/978-3-319-72150-7_31 conf/complexnetworks/2017 db/conf/complexnetworks/complexnetworks2017.html#NathanFB17 Devavret Makkar David A. Bader Oded Green Exact and Parallel Triangle Counting in Dynamic Graphs. 2-12 2017 HiPC https://doi.org/10.1109/HiPC.2017.00011 https://doi.ieeecomputersociety.org/10.1109/HiPC.2017.00011 conf/hipc/2017 db/conf/hipc/hipc2017.html#MakkarBG17 Oded Green James Fox Euna Kim Federico Busato Nicola Bombieri Kartik Lakhotia Shijie Zhou 0001 Shreyas G. Singapura Hanqing Zeng Rajgopal Kannan Viktor K. Prasanna David A. Bader Quickly finding a truss in a haystack. 1-7 2017 HPEC https://doi.org/10.1109/HPEC.2017.8091038 conf/hpec/2017 db/conf/hpec/hpec2017.html#GreenFKBBLZSZKP17 Shijie Zhou 0001 Kartik Lakhotia Shreyas G. Singapura Hanqing Zeng Rajgopal Kannan Viktor K. Prasanna James Fox Euna Kim Oded Green David A. Bader Design and implementation of parallel PageRank on multicore platforms. 1-6 2017 HPEC https://doi.org/10.1109/HPEC.2017.8091048 conf/hpec/2017 db/conf/hpec/hpec2017.html#ZhouLSZKPFKGB17 Eisha Nathan Geoffrey Sanders James P. Fairbanks Van Emden Henson David A. Bader Graph Ranking Guarantees for Numerical Approximations to Katz Centrality. 68-78 2017 ICCS https://doi.org/10.1016/j.procs.2017.05.021 conf/iccS/2017 db/conf/iccS/iccS2017.html#NathanSFEB17 Xinning Hui Zhihui Du Jason Liu 0001 Hongyang Sun 0001 Yuxiong He David A. Bader When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers. 984-993 2017 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2017.38 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2017.38 conf/ipps/2017w db/conf/ipps/ipdps2017w.html#HuiDLSHB17 David A. Bader Introduction to EMBRACE Workshop. 1557 2017 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2017.219 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2017.219 conf/ipps/2017w db/conf/ipps/ipdps2017w.html#Bader17 Eisha Nathan David A. Bader Approximating Personalized Katz Centrality in Dynamic Graphs. 290-302 2017 PPAM (1) https://doi.org/10.1007/978-3-319-78024-5_26 conf/ppam/2017-1 db/conf/ppam/ppam2017-1.html#NathanB17

Zhaoming Yin Jijun Tang Stephen W. Schaeffer David A. Bader Exemplar or Matching: Modeling DCJ Problems with Unequal Content Genome Data. 2017 abs/1705.06559 CoRR http://arxiv.org/abs/1705.06559 db/journals/corr/corr1705.html#YinTSB17

David A. Bader Evolving MPI+X Toward Exascale. 10 2016 49 Computer 8 https://doi.org/10.1109/MC.2016.232 http://doi.ieeecomputersociety.org/10.1109/MC.2016.232 db/journals/computer/computer49.html#Bader16

Zhaoming Yin Jijun Tang Stephen W. Schaeffer David A. Bader Exemplar or matching: modeling DCJ problems with unequal content genome data. 1165-1181 2016 32 J. Comb. Optim. 4 https://doi.org/10.1007/s10878-015-9940-4 db/journals/jco/jco32.html#YinTSB16

Anita Zakrzewska David A. Bader Tracking local communities in streaming graphs with a dynamic algorithm. 65:1-65:16 2016 6 Soc. Netw. Anal. Min. 1 https://doi.org/10.1007/s13278-016-0374-5 db/journals/snam/snam6.html#ZakrzewskaB16

Quan Yang Zhihui Du Zhou-Jian Cao Jian Tao David A. Bader A New Parallel Method for Binary Black Hole Simulations. 2360492:1-2360492:14 2016 2016 Sci. Program. https://doi.org/10.1155/2016/2360492 https://www.wikidata.org/entity/Q59141463 db/journals/sp/sp2016.html#YangDCTB16

Daniel Dauwe Eric Jonardi Ryan D. Friese Sudeep Pasricha Anthony A. Maciejewski David A. Bader Howard Jay Siegel HPC node performance and energy modeling with the co-location of applications. 4771-4809 2016 72 J. Supercomput. 12 https://doi.org/10.1007/s11227-016-1783-y db/journals/tjs/tjs72.html#DauweJFPMBS16

David A. Bader Editor's Note. 1 2016 27 IEEE Trans. Parallel Distributed Syst. 1 https://doi.org/10.1109/TPDS.2015.2499578 http://doi.ieeecomputersociety.org/10.1109/TPDS.2015.2499578 db/journals/tpds/tpds27.html#Bader16

James P. Fairbanks Anita Zakrzewska David A. Bader New stopping criteria for spectral partitioning. 25-32 2016 ASONAM https://doi.org/10.1109/ASONAM.2016.7752209 https://doi.ieeecomputersociety.org/10.1109/ASONAM.2016.7752209 conf/asunam/2016 db/conf/asunam/asonam2016.html#FairbanksZB16 Anita Zakrzewska Eisha Nathan James P. Fairbanks David A. Bader A local measure of community change in dynamic graphs. 349-353 2016 ASONAM https://doi.org/10.1109/ASONAM.2016.7752257 https://doi.ieeecomputersociety.org/10.1109/ASONAM.2016.7752257 conf/asunam/2016 db/conf/asunam/asonam2016.html#ZakrzewskaNFB16 Anita Zakrzewska David A. Bader Aging data in dynamic graphs: A comparative study. 1055-1062 2016 ASONAM https://doi.org/10.1109/ASONAM.2016.7752372 https://doi.ieeecomputersociety.org/10.1109/ASONAM.2016.7752372 conf/asunam/2016 db/conf/asunam/asonam2016.html#ZakrzewskaB16 Oded Green David A. Bader cuSTINGER: Supporting dynamic graph algorithms for GPUs. 1-6 2016 HPEC https://doi.org/10.1109/HPEC.2016.7761622 conf/hpec/2016 db/conf/hpec/hpec2016.html#GreenB16 Jeremy Kepner Peter Aaltonen David A. Bader Aydin Buluç Franz Franchetti John R. Gilbert Dylan Hutchison Manoj Kumar 0006 Andrew Lumsdaine Henning Meyerhenke Scott McMillan Carl Yang 0002 John D. Owens Marcin Zalewski Timothy G. Mattson José E. Moreira Mathematical foundations of the GraphBLAS. 1-9 2016 HPEC https://doi.org/10.1109/HPEC.2016.7761646 conf/hpec/2016 db/conf/hpec/hpec2016.html#KepnerABBFGHKLM16 Srinivas Aluru David A. Bader Ananth Kalyanaraman Jaroslaw Zola HiCOMB Introduction and Committees. 407 2016 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2016.228 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2016.228 conf/ipps/2016w db/conf/ipps/ipdps2016w.html#AluruBKZ16 Vipin Sachdeva Srinivas Aluru David A. Bader A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. 453-462 2016 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2016.59 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2016.59 conf/ipps/2016w db/conf/ipps/ipdps2016w.html#SachdevaAB16 David A. Bader GABB 2016 Keynote. 856 2016 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2016.234 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2016.234 conf/ipps/2016w db/conf/ipps/ipdps2016w.html#Bader16 David A. Bader Engineering Algorithms for Computational Biology. 628-630 2016 Encyclopedia of Algorithms https://doi.org/10.1007/978-1-4939-2864-4_124 db/reference/algo/algo2016.html#Bader16 David A. Bader High Performance Algorithm Engineering for Large-Scale Problems. 914-918 2016 Encyclopedia of Algorithms https://doi.org/10.1007/978-1-4939-2864-4_178 db/reference/algo/algo2016.html#Bader16a David A. Bader Sorting Signed Permutations by Reversal (Reversal Distance). 2026-2028 2016 Encyclopedia of Algorithms https://doi.org/10.1007/978-1-4939-2864-4_383 db/reference/algo/algo2016.html#Bader16b

Jeremy Kepner Peter Aaltonen David A. Bader Aydin Buluç Franz Franchetti John R. Gilbert Dylan Hutchison Manoj Kumar 0006 Andrew Lumsdaine Henning Meyerhenke Scott McMillan José E. Moreira John D. Owens Carl Yang 0002 Marcin Zalewski Timothy G. Mattson Mathematical Foundations of the GraphBLAS. 2016 abs/1606.05790 CoRR http://arxiv.org/abs/1606.05790 db/journals/corr/corr1606.html#KepnerABBFGHKLM16

James P. Fairbanks Ramakrishnan Kannan Haesun Park David A. Bader Behavioral clusters in dynamic graphs. 38-50 2015 47 Parallel Comput. https://doi.org/10.1016/j.parco.2015.03.002 https://www.wikidata.org/entity/Q125590213 db/journals/pc/pc47.html#FairbanksKPB15

David A. Bader State of the Journal. 1506-1508 2015 64 IEEE Trans. Computers 6 https://doi.org/10.1109/TC.2015.2427951 http://doi.ieeecomputersociety.org/10.1109/TC.2015.2427951 db/journals/tc/tc64.html#Bader15

Yunpeng Chai Zhihui Du Xiao Qin 0001 David A. Bader WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data. 3304-3316 2015 64 IEEE Trans. Computers 11 https://doi.org/10.1109/TC.2015.2401029 http://doi.ieeecomputersociety.org/10.1109/TC.2015.2401029 db/journals/tc/tc64.html#ChaiDQB15

David A. Bader Editor's Note. 1 2015 26 IEEE Trans. Parallel Distributed Syst. 1 https://doi.org/10.1109/TPDS.2014.2367831 http://doi.ieeecomputersociety.org/10.1109/TPDS.2014.2367831 db/journals/tpds/tpds26.html#Bader15

Adam McLaughlin Duane Merrill Michael Garland David A. Bader Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures. 51-62 2015 PACT https://doi.org/10.1109/PACT.2015.18 https://doi.ieeecomputersociety.org/10.1109/PACT.2015.18 conf/IEEEpact/2015 db/conf/IEEEpact/pact2015.html#McLaughlinMGB15 Anita Zakrzewska David A. Bader A Dynamic Algorithm for Local Community Detection in Graphs. 559-564 2015 ASONAM https://doi.org/10.1145/2808797.2809375 conf/asunam/2015 db/conf/asunam/asonam2015.html#ZakrzewskaB15 Adam McLaughlin E. Jason Riedy David A. Bader A fast, energy-efficient abstraction for simultaneous breadth-first searches. 1-6 2015 HPEC https://doi.org/10.1109/HPEC.2015.7322466 conf/hpec/2015 db/conf/hpec/hpec2015.html#McLaughlinRB15 Jeremy Kepner David A. Bader Aydin Buluç John R. Gilbert Timothy G. Mattson Henning Meyerhenke Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. 2453-2462 2015 ICCS https://doi.org/10.1016/j.procs.2015.05.353 conf/iccS/2015 db/conf/iccS/iccS2015.html#KepnerBBGMM15 Adam McLaughlin David A. Bader Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs. 9-18 2015 ICPADS https://doi.org/10.1109/ICPADS.2015.10 https://doi.ieeecomputersociety.org/10.1109/ICPADS.2015.10 conf/icpads/2015 db/conf/icpads/icpads2015.html#McLaughlinB15 Sanguthevar Rajasekaran Srinivas Aluru David A. Bader HiCOMB Introduction and Committees. 329-330 2015 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2015.160 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2015.160 conf/ipps/2015w db/conf/ipps/ipdps2015w.html#RajasekaranAB15 Daniel Dauwe Eric Jonardi Ryan D. Friese Sudeep Pasricha Anthony A. Maciejewski David A. Bader Howard Jay Siegel A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing. 434-443 2015 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2015.38 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2015.38 conf/ipps/2015w db/conf/ipps/ipdps2015w.html#DauweJFPMBS15 David A. Bader Yihua Huang Ananth Kalyanaraman ParLearning Keynotes. 1154-1156 2015 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2015.179 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2015.179 conf/ipps/2015w db/conf/ipps/ipdps2015w.html#BaderHK15 Anita Zakrzewska David A. Bader Fast Incremental Community Detection on Dynamic Graphs. 207-217 2015 PPAM (1) https://doi.org/10.1007/978-3-319-32149-3_20 conf/ppam/2015-1 db/conf/ppam/ppam2015-1.html#ZakrzewskaB15

Jeremy Kepner David A. Bader Aydin Buluç John R. Gilbert Timothy G. Mattson Henning Meyerhenke Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. 2015 abs/1504.01039 CoRR http://arxiv.org/abs/1504.01039 db/journals/corr/corr1504.html#KepnerBBGMM15

James P. Fairbanks Geoffrey D. Sanders David A. Bader Spectral Partitioning with Blends of Eigenvectors. 2015 abs/1510.04658 CoRR http://arxiv.org/abs/1510.04658 db/journals/corr/corr1510.html#FairbanksSB15

David A. Bader Petra Mutzel Introduction to Special Issue ALENEX'12. 2014 19 ACM J. Exp. Algorithmics 1 https://doi.org/10.1145/2721893 https://www.wikidata.org/entity/Q56976956 db/journals/jea/jea19.html#BaderM14

David A. Bader State of the Journal. 1 2014 25 IEEE Trans. Parallel Distributed Syst. 1 https://doi.org/10.1109/TPDS.2014.3 http://doi.ieeecomputersociety.org/10.1109/TPDS.2014.3 db/journals/tpds/tpds25.html#Bader14

Zhaoming Yin Jijun Tang Stephen W. Schaeffer David A. Bader A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. 227-238 2014 COCOON https://doi.org/10.1007/978-3-319-08783-2_20 conf/cocoon/2014 db/conf/cocoon/cocoon2014.html#YinTSB14 Adam McLaughlin E. Jason Riedy David A. Bader Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs. 1-6 2014 HPEC https://doi.org/10.1109/HPEC.2014.7040980 conf/hpec/2014 db/conf/hpec/hpec2014.html#McLaughlinRB14 Yang You 0001 David A. Bader Maryam Mehri Dehnavi Designing a Heuristic Cross-Architecture Combination for Breadth-First Search. 70-79 2014 ICPP https://doi.org/10.1109/ICPP.2014.16 https://doi.ieeecomputersociety.org/10.1109/ICPP.2014.16 conf/icpp/2014 db/conf/icpp/icpp2014.html#YouBD14 Alba Cristina Magalhaes Alves de Melo Srinivas Aluru David A. Bader HiCOMB Introduction and Committees. 497-498 2014 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2014.212 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2014.212 conf/ipps/2014w db/conf/ipps/ipdps2014w.html#MeloAB14 Tim Mattson David A. Bader Aydin Buluç John R. Gilbert Joseph Gonzalez 0001 Jeremy Kepner GABB Introduction. 1135-1137 2014 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2014.221 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2014.221 conf/ipps/2014w db/conf/ipps/ipdps2014w.html#MattsonBBGGK14 Adam McLaughlin David A. Bader Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics. 1396-1406 2014 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2014.157 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2014.157 conf/ipps/2014w db/conf/ipps/ipdps2014w.html#McLaughlinB14 Oded Green Lluís-Miquel Munguía David A. Bader Load balanced clustering coefficients. 3-10 2014 PPAA@PPoPP https://doi.org/10.1145/2567634.2567635 conf/ppopp/2014ppaa db/conf/ppopp/ppaa2014.html#GreenMB14 Robert Campbell McColl David Ediger Jason Poovey Dan Campbell David A. Bader A performance evaluation of open source graph databases. 11-18 2014 PPAA@PPoPP https://doi.org/10.1145/2567634.2567638 conf/ppopp/2014ppaa db/conf/ppopp/ppaa2014.html#McCollEPCB14 Adam McLaughlin David A. Bader Scalable and High Performance Betweenness Centrality on the GPU. 572-583 2014 SC https://doi.org/10.1109/SC.2014.52 https://doi.ieeecomputersociety.org/10.1109/SC.2014.52 conf/sc/2014 db/conf/sc/sc2014.html#McLaughlinB14 David A. Bader Henning Meyerhenke Peter Sanders 0001 Christian Schulz 0003 Andrea Kappes Dorothea Wagner Benchmarking for Graph Clustering and Partitioning. 73-82 2014 Encyclopedia of Social Network Analysis and Mining https://doi.org/10.1007/978-1-4614-6170-8_23 db/reference/snam/snam2014.html#BaderMS0KW14

Tim Mattson David A. Bader Jonathan W. Berry Aydin Buluç Jack J. Dongarra Christos Faloutsos John Feo John R. Gilbert Joseph Gonzalez 0001 Bruce Hendrickson Jeremy Kepner Charles E. Leiserson Andrew Lumsdaine David A. Padua Stephen W. Poole Steven P. Reinhardt Mike Stonebraker Steve Wallach Andrew Yoo Standards for Graph Algorithm Primitives. 2014 abs/1408.0393 CoRR http://arxiv.org/abs/1408.0393 db/journals/corr/corr1408.html#MattsonBBBDFFGGHKLLPPRSWY14

E. Jason Riedy David A. Bader Massive streaming data analytics: a graph-based approach. 37-43 2013 19 XRDS 3 https://doi.org/10.1145/2425676.2425689 db/journals/crossroads/crossroads19.html#RiedyB13

Xing Liu Pushkar R. Pande Henning Meyerhenke David A. Bader PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly. 977-986 2013 24 IEEE Trans. Parallel Distributed Syst. 5 https://doi.org/10.1109/TPDS.2012.190 http://doi.ieeecomputersociety.org/10.1109/TPDS.2012.190 db/journals/tpds/tpds24.html#LiuPMB13

David Ediger Karl Jiang E. Jason Riedy David A. Bader GraphCT: Multithreaded Algorithms for Massive Graph Analysis. 2220-2229 2013 24 IEEE Trans. Parallel Distributed Syst. 11 https://doi.org/10.1109/TPDS.2012.323 http://doi.ieeecomputersociety.org/10.1109/TPDS.2012.323 db/journals/tpds/tpds24.html#EdigerJRB13

James P. Fairbanks David Ediger Robert McColl David A. Bader Eric Gilbert A statistical framework for streaming graph analysis. 341-347 2013 ASONAM https://doi.org/10.1145/2492517.2492620 conf/asunam/2013 db/conf/asunam/asonam2013.html#FairbanksEMBG13 Robert McColl Oded Green David A. Bader A new parallel algorithm for connected components in dynamic graphs. 246-255 2013 HiPC https://doi.org/10.1109/HiPC.2013.6799108 https://doi.ieeecomputersociety.org/10.1109/HiPC.2013.6799108 conf/hipc/2013 db/conf/hipc/hipc2013.html#McCollGB13 Tim Mattson David A. Bader Jonathan W. Berry Aydin Buluç Jack J. Dongarra Christos Faloutsos John Feo John R. Gilbert Joseph Gonzalez 0001 Bruce Hendrickson Jeremy Kepner Charles E. Leiserson Andrew Lumsdaine David A. Padua Stephen Poole 0001 Steven P. Reinhardt Mike Stonebraker Steve Wallach Andrew Yoo Standards for graph algorithm primitives. 1-2 2013 HPEC https://doi.org/10.1109/HPEC.2013.6670338 https://www.wikidata.org/entity/Q27011585 conf/hpec/2013 db/conf/hpec/hpec2013.html#MattsonBBBDFFGGHKLLPPRSWY13 Oded Green David A. Bader Faster Betweenness Centrality Based on Data Structure Experimentation. 399-408 2013 ICCS https://doi.org/10.1016/j.procs.2013.05.203 conf/iccS/2013 db/conf/iccS/iccS2013.html#GreenB13 Zhaoming Yin Jijun Tang Stephen W. Schaeffer David A. Bader Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. 561-570 2013 ICCS https://doi.org/10.1016/j.procs.2013.05.220 conf/iccS/2013 db/conf/iccS/iccS2013.html#YinTSB13 Jaroslaw Zola David A. Bader Srinivas Aluru HiCOMB Introduction. 499-500 2013 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2013.285 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2013.285 conf/ipps/2013w db/conf/ipps/ipdps2013w.html#ZolaBA13 Zhihui Du Hongyang Sun 0001 Yuxiong He Yu He David A. Bader Huazhe Zhang Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality. 637-648 2013 IPDPS https://doi.org/10.1109/IPDPS.2013.26 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2013.26 conf/ipps/2013 db/conf/ipps/ipdps2013.html#DuSHHBZ13 David Ediger David A. Bader Investigating Graph Algorithms in the BSP Model on the Cray XMT. 1638-1645 2013 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2013.107 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2013.107 conf/ipps/2013w db/conf/ipps/ipdps2013w.html#EdigerB13 E. Jason Riedy David A. Bader Multithreaded Community Monitoring for Massive Streaming Graph Data. 1646-1655 2013 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2013.229 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2013.229 conf/ipps/2013w db/conf/ipps/ipdps2013w.html#RiedyB13 David Ediger David A. Bader Designing Hybrid Architectures for Massive-Scale Graph Analysis. 2262-2265 2013 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2013.172 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2013.172 conf/ipps/2013w db/conf/ipps/ipdps2013w.html#EdigerB13a Ted E. Senator Henry G. Goldberg Alex Memory William T. Young Brad Rees Robert Pierce Daniel Huang 0003 Matthew Reardon David A. Bader Edmond Chow Irfan A. Essa Joshua Jones Vinay Bettadapura Duen Horng Chau Oded Green Oguz Kaya Anita Zakrzewska Erica Briscoe Rudolph L. Mappus IV Robert McColl Lora Weiss Thomas G. Dietterich Alan Fern Weng-Keen Wong Shubhomoy Das Andrew Emmott Jed Irvine Jay Yoon Lee Danai Koutra Christos Faloutsos Daniel D. Corkill Lisa Friedland Amanda Gentzel David D. Jensen Detecting insider threats in a real corporate database of computer usage activity. 1393-1401 2013 KDD https://doi.org/10.1145/2487575.2488213 https://www.wikidata.org/entity/Q59551244 conf/kdd/2013 db/conf/kdd/kdd2013.html#SenatorGMYRPHRBCEJBCGKZBMMWDFWDEILKFCFGJ13 Anita Zakrzewska David A. Bader Measuring the Sensitivity of Graph Metrics to Missing Data. 783-792 2013 PPAM (1) https://doi.org/10.1007/978-3-642-55224-3_73 conf/ppam/2013-1 db/conf/ppam/ppam2013-1.html#ZakrzewskaB13 Oded Green David A. Bader Faster Clustering Coefficient Using Vertex Covers. 321-330 2013 SocialCom https://doi.org/10.1109/SocialCom.2013.51 https://doi.ieeecomputersociety.org/10.1109/SocialCom.2013.51 conf/socialcom/2013 db/conf/socialcom/socialcom2013.html#GreenB13 David A. Bader Henning Meyerhenke Peter Sanders 0001 Dorothea Wagner Graph Partitioning and Graph Clustering, 10th DIMACS Implementation Challenge Workshop, Georgia Institute of Technology, Atlanta, GA, USA, February 13-14, 2012. Proceedings American Mathematical Society Graph Partitioning and Graph Clustering 2013 Contemporary Mathematics 588 978-0-8218-9038-7 978-0-8218-9869-7 https://doi.org/10.1090/conm/588 https://www.wikidata.org/entity/Q56688748 db/conf/dimacs/dimacs2012.html

Shel Swenson Yogesh Simmhan Viktor K. Prasanna Manish Parashar E. Jason Riedy David A. Bader Richard W. Vuduc Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms. 2013 CoRR http://arxiv.org/abs/1309.1828 abs/1309.1828 db/journals/corr/corr1309.html#SwensonSPPRBV13

Robert McColl David Ediger Jason Poovey Dan Campbell David A. Bader A Brief Study of Open Source Graph Databases. 2013 CoRR http://arxiv.org/abs/1309.2675 abs/1309.2675 db/journals/corr/corr1309.html#McCollEPCB13

David A. Bader Philippas Tsigas ACM journal on experimental algorithmics special issue on multicore algorithms. 2012 17 ACM J. Exp. Algorithmics 1 https://doi.org/10.1145/2133803.2345675 db/journals/jea/jea17.html#BaderT12

Yunpeng Chai Zhihui Du David A. Bader Xiao Qin 0001 Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems. 2081-2093 2012 23 IEEE Trans. Parallel Distributed Syst. 11 https://doi.org/10.1109/TPDS.2012.63 http://doi.ieeecomputersociety.org/10.1109/TPDS.2012.63 db/journals/tpds/tpds23.html#ChaiDBQ12

E. Jason Riedy Henning Meyerhenke David Ediger David A. Bader Parallel community detection for massive graphs. 207-222 2012 Graph Partitioning and Graph Clustering http://www.ams.org/books/conm/588/11703 conf/dimacs/2012 db/conf/dimacs/dimacs2012.html#RiedyMEB12 Lluís-Miquel Munguía David A. Bader Eduard Ayguadé Task-based parallel breadth-first search in heterogeneous environments. 1-10 2012 HiPC https://doi.org/10.1109/HiPC.2012.6507474 https://doi.ieeecomputersociety.org/10.1109/HiPC.2012.6507474 https://www.wikidata.org/entity/Q61735431 conf/hipc/2012 db/conf/hipc/hipc2012.html#MunguiaBA12 David Ediger Robert McColl E. Jason Riedy David A. Bader STINGER: High performance data structure for streaming graphs. 1-5 2012 HPEC https://doi.org/10.1109/HPEC.2012.6408680 conf/hpec/2012 db/conf/hpec/hpec2012.html#EdigerMRB12 E. Jason Riedy Henning Meyerhenke David A. Bader David Ediger Timothy G. Mattson Analysis of streaming social networks and graphs on multicore architectures. 5337-5340 2012 ICASSP https://doi.org/10.1109/ICASSP.2012.6289126 conf/icassp/2012 db/conf/icassp/icassp2012.html#RiedyMBEM12 Oded Green Robert McColl David A. Bader GPU merge path: a GPU merging algorithm. 331-340 2012 ICS https://doi.org/10.1145/2304576.2304621 https://www.wikidata.org/entity/Q131126788 conf/ics/2012 db/conf/ics/ics2012.html#GreenMB12 David A. Bader HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing. 6 2012 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2012.334 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2012.334 conf/ipps/2012w db/conf/ipps/ipdps2012w.html#Bader12 Mark J. Clement Quinn Snell Srinivas Aluru David A. Bader HiCOMB Introduction. 663-664 2012 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2012.338 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2012.338 conf/ipps/2012w db/conf/ipps/ipdps2012w.html#ClementSAB12 E. Jason Riedy David A. Bader Henning Meyerhenke Scalable Multi-threaded Community Detection in Social Networks. 1619-1628 2012 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2012.203 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2012.203 conf/ipps/2012w db/conf/ipps/ipdps2012w.html#RiedyBM12 Jussara Marandola Stéphane Louise Loïc Cudennec Jean-Thomas Acquaviva David A. Bader Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems. 1-7 2012 ISSoC https://doi.org/10.1109/ISSoC.2012.6376369 conf/issoc/2012 db/conf/issoc/issoc2012.html#MarandolaLCAB12 Oded Green Robert McColl David A. Bader A Fast Algorithm for Streaming Betweenness Centrality. 11-20 2012 SocialCom/PASSAT https://doi.org/10.1109/SocialCom-PASSAT.2012.37 https://doi.ieeecomputersociety.org/10.1109/SocialCom-PASSAT.2012.37 conf/socialcom/2012 db/conf/socialcom/socialcom2012.html#GreenMB12 David A. Bader Petra Mutzel Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, ALENEX 2012, The Westin Miyako, Kyoto, Japan, January 16, 2012 ALENEX SIAM / Omnipress 2012 978-1-61197-212-2 978-1-61197-292-4 https://doi.org/10.1137/1.9781611972924 db/conf/alenex/alenex2012.html

Seunghwa Kang David Ediger David A. Bader Algorithm Engineering Challenges in Multicore and Manycore Systems. 266-273 2011 53 it Inf. Technol. 6 https://doi.org/10.1524/itit.2011.0652 db/journals/it/it53.html#KangEB11

David A. Bader David R. Kaeli Volodymyr V. Kindratenko Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators. 3-6 2011 22 IEEE Trans. Parallel Distributed Syst. 1 https://doi.org/10.1109/TPDS.2011.8 http://doi.ieeecomputersociety.org/10.1109/TPDS.2011.8 db/journals/tpds/tpds22.html#BaderKK11

Wenjie Liu Zhihui Du Yu Xiao David A. Bader Chen Xu A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters. 82-92 2011 IPDPS Workshops https://doi.org/10.1109/IPDPS.2011.129 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2011.129 conf/ipps/2011w db/conf/ipps/ipdps2011w.html#LiuDXBX11 Ananth Kalyanaraman Srinivas Aluru David A. Bader HiCOMB Introduction. 426-427 2011 IPDPS Workshops https://doi.org/10.1109/IPDPS.2011.398 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2011.398 conf/ipps/2011w db/conf/ipps/ipdps2011w.html#KalyanaramanAB11 David Ediger E. Jason Riedy David A. Bader Henning Meyerhenke Tracking Structure of Streaming Social Networks. 1691-1699 2011 IPDPS Workshops https://doi.org/10.1109/IPDPS.2011.326 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2011.326 conf/ipps/2011w db/conf/ipps/ipdps2011w.html#EdigerRBM11 E. Jason Riedy Henning Meyerhenke David Ediger David A. Bader Parallel Community Detection for Massive Graphs. 286-296 2011 PPAM (1) https://doi.org/10.1007/978-3-642-31464-3_29 conf/ppam/2011-1 db/conf/ppam/ppam2011-1.html#RiedyMEB11 David A. Bader Christine E. Heitsch Kamesh Madduri Large-Scale Network Analysis. 253-285 2011 Graph Algorithms in the Language of Linear Algebra https://doi.org/10.1137/1.9780898719918.ch12 books/siam/11/KG2011 db/books/collections/KG2011.html#BaderHM11 Jeremy Kepner David A. Bader Robert Bond Nadya T. Bliss Christos Faloutsos Bruce Hendrickson John R. Gilbert Eric Robinson Fundamental Questions in the Analysis of Large Graphs. 353-357 2011 Graph Algorithms in the Language of Linear Algebra https://doi.org/10.1137/1.9780898719918.ch16 books/siam/11/KG2011 db/books/collections/KG2011.html#KepnerBBBFHGR11 David A. Bader Guojing Cong Graph Algorithms. 796-805 2011 Encyclopedia of Parallel Computing https://doi.org/10.1007/978-0-387-09766-4_102 reference/parallel/2011 db/reference/parallel/parallel2011.html#BaderC11 Guojing Cong David A. Bader Hybrid Programming With SIMPLE. 851-860 2011 Encyclopedia of Parallel Computing https://doi.org/10.1007/978-0-387-09766-4_82 reference/parallel/2011 db/reference/parallel/parallel2011.html#CongB11 David A. Bader Guojing Cong Spanning Tree, Minimum Weight. 1870-1877 2011 Encyclopedia of Parallel Computing https://doi.org/10.1007/978-0-387-09766-4_104 reference/parallel/2011 db/reference/parallel/parallel2011.html#BaderC11a David A. Bader Guojing Cong SWARM: A Parallel Programming Framework for Multicore Processors. 1966-1971 2011 Encyclopedia of Parallel Computing https://doi.org/10.1007/978-0-387-09766-4_52 reference/parallel/2011 db/reference/parallel/parallel2011.html#BaderC11b

Mingyu Chen 0001 David A. Bader Seunghwa Kang On the random access performance of Cell Broadband Engine with graph analysis application http://arxiv.org/abs/1105.5881 2011 CoRR abs/1105.5881 db/journals/corr/corr1105.html#abs-1105-5881

Zhihui Du Zhaoming Yin Wenjie Liu David A. Bader On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment. 543-548 2010 BIBM Workshops https://doi.org/10.1109/BIBMW.2010.5703859 conf/bibm/2010w db/conf/bibm/bibmw2010.html#DuYLB10 David A. Bader Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures. 1 2010 Facing the Multicore-Challenge https://doi.org/10.1007/978-3-642-16233-6_1 conf/haw/2010 db/conf/haw/haw2010.html#Bader10 David Ediger Karl Jiang E. Jason Riedy David A. Bader Courtney D. Corley Robert M. Farber William N. Reynolds Massive Social Network Analysis: Mining Twitter for Social Good. 583-593 2010 ICPP https://doi.org/10.1109/ICPP.2010.66 https://doi.ieeecomputersociety.org/10.1109/ICPP.2010.66 conf/icpp/2010 db/conf/icpp/icpp2010.html#EdigerJRBCFR10 David A. Bader Message from general chair. 1-2 2010 IPDPS https://doi.org/10.1109/IPDPS.2010.5470381 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2010.5470381 conf/ipps/2010 db/conf/ipps/ipdps2010.html#Bader10 Zhihui Du Zhaoming Yin David A. Bader A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA. 1-8 2010 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2010.5470903 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2010.5470903 conf/ipps/2010w db/conf/ipps/ipdps2010w.html#DuYB10 David Ediger Karl Jiang E. Jason Riedy David A. Bader Massive streaming data analytics: A case study with clustering coefficients. 1-8 2010 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2010.5470687 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2010.5470687 conf/ipps/2010w db/conf/ipps/ipdps2010w.html#EdigerJRB10 Seunghwa Kang David A. Bader Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system. 1-8 2010 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2010.5470691 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2010.5470691 conf/ipps/2010w db/conf/ipps/ipdps2010w.html#KangB10 George Karypis Srinivas Aluru David A. Bader Message from the workshop chairs. 1-2 2010 IPDPS Workshops https://doi.org/10.1109/IPDPSW.2010.5470902 https://doi.ieeecomputersociety.org/10.1109/IPDPSW.2010.5470902 conf/ipps/2010w db/conf/ipps/ipdps2010w.html#KarypisAB10 Vipin Sachdeva Michael Kistler David A. Bader Evaluating Cell/B.E software cache for ClustalW. 3793-3796 2010 ISCAS https://doi.org/10.1109/ISCAS.2010.5537720 conf/iscas/2010 db/conf/iscas/iscas2010.html#SachdevaKB10 Virat Agarwal Fabrizio Petrini Davide Pasetto David A. Bader Scalable Graph Exploration on Multicore Processors. 1-11 2010 SC https://doi.org/10.1109/SC.2010.46 https://doi.ieeecomputersociety.org/10.1109/SC.2010.46 http://dl.acm.org/citation.cfm?id=1884670 conf/sc/2010 db/conf/sc/sc2010.html#AgarwalPPB10 Virat Agarwal David A. Bader Designing Fast Fourier Transform for the IBM Cell Broadband Engine. 151-170 2010 Scientific Computing with Multicore and Accelerators https://doi.org/10.1201/b10376-13 books/tf/10/KBD2010 db/books/collections/KBD2010.html#AgarwalB10 David A. Bader Virat Agarwal Kamesh Madduri Fabrizio Petrini Combinatorial Algorithm Design on the Cell/B.E. Processor. 195-216 2010 Scientific Computing with Multicore and Accelerators https://doi.org/10.1201/b10376-16 books/tf/10/KBD2010 db/books/collections/KBD2010.html#BaderAMP10 Jakub Kurzak David A. Bader Jack J. Dongarra Scientific Computing with Multicore and Accelerators. CRC Press / Taylor & Francis 2010 Chapman and Hall / CRC computational science series 978-1-4398-2536-5 https://doi.org/10.1201/b10376 db/books/collections/KBD2010.html

Virat Agarwal David A. Bader Lin Dan Lurng-Kuo Liu Davide Pasetto Michael Perrone Fabrizio Petrini Faster FAST: multicore acceleration of streaming financial data. 249-257 2009 23 Comput. Sci. Res. Dev. 3-4 https://doi.org/10.1007/s00450-009-0093-5 db/journals/ife/ife23.html#AgarwalBDLPPP09

David A. Bader Virat Agarwal Seunghwa Kang Computing discrete transforms on the Cell Broadband Engine. 119-137 2009 35 Parallel Comput. 3 https://doi.org/10.1016/j.parco.2008.12.007 db/journals/pc/pc35.html#BaderAK09

Rick Quax David A. Bader Peter M. A. Sloot Simulating Individual-Based Models of Epidemics in Hierarchical Networks. 725-734 2009 ICCS (1) https://doi.org/10.1007/978-3-642-01970-8_72 https://www.wikidata.org/entity/Q108862485 conf/iccS/2009-1 db/conf/iccS/iccS2009-1.html#QuaxBS09 Song Hao Zhihui Du David A. Bader Yin Ye A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache. 396-403 2009 ICPP https://doi.org/10.1109/ICPP.2009.26 https://doi.ieeecomputersociety.org/10.1109/ICPP.2009.26 conf/icpp/2009 db/conf/icpp/icpp2009.html#HaoDBY09 Karl Jiang David Ediger David A. Bader Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation. 542-549 2009 ICPP https://doi.org/10.1109/ICPP.2009.76 https://doi.ieeecomputersociety.org/10.1109/ICPP.2009.76 conf/icpp/2009 db/conf/icpp/icpp2009.html#JiangEB09 Seunghwa Kang David A. Bader Richard W. Vuduc Understanding the design trade-offs among current multicore systems for numerical computations. 1-12 2009 IPDPS https://doi.org/10.1109/IPDPS.2009.5161055 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2009.5161055 conf/ipps/2009 db/conf/ipps/ipdps2009.html#KangBV09 Kamesh Madduri David A. Bader Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. 1-11 2009 IPDPS https://doi.org/10.1109/IPDPS.2009.5161060 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2009.5161060 conf/ipps/2009 db/conf/ipps/ipdps2009.html#MadduriB09 Kamesh Madduri David Ediger Karl Jiang David A. Bader Daniel G. Chavarría-Miranda A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. 1-8 2009 IPDPS https://doi.org/10.1109/IPDPS.2009.5161100 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2009.5161100 conf/ipps/2009 db/conf/ipps/ipdps2009.html#MadduriEJBC09 Seunghwa Kang David A. Bader An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. 15-24 2009 PPoPP https://doi.org/10.1145/1504176.1504182 https://doi.org/10.1145/1594835.1504182 conf/ppopp/2009 db/conf/ppopp/ppopp2009.html#KangB09 Amrita Mathuriya David A. Bader Christine E. Heitsch Stephen C. Harvey <i>GTfold</i>: a scalable multicore code for RNA secondary structure prediction. 981-988 2009 SAC https://doi.org/10.1145/1529282.1529497 conf/sac/2009 db/conf/sac/sac2009.html#MathuriyaBHH09

David A. Bader Srinivas Aluru High-performance computational biology. 613-615 2008 34 Parallel Comput. 11 https://doi.org/10.1016/j.parco.2008.10.001 https://www.wikidata.org/entity/Q43203294 db/journals/pc/pc34.html#BaderA08

David A. Bader Kamesh Madduri A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. 627-639 2008 34 Parallel Comput. 11 https://doi.org/10.1016/j.parco.2008.04.002 db/journals/pc/pc34.html#BaderM08

David A. Bader Petascale Computing for Large-Scale Graph Problems. 779 2008 conf/cisis/2008 CISIS https://doi.org/10.1109/CISIS.2008.150 https://doi.ieeecomputersociety.org/10.1109/CISIS.2008.150 db/conf/cisis/cisis2008.html#Bader08 Song Hao Zhihui Du David A. Bader Man Wang A Prediction Based CMP Cache Migration Policy. 374-381 2008 HPCC https://doi.org/10.1109/HPCC.2008.83 conf/hpcc/2008 db/conf/hpcc/hpcc2008.html#HaoDBW08 Seunghwa Kang David A. Bader Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. 83-90 2008 ICPP https://doi.org/10.1109/ICPP.2008.39 https://doi.ieeecomputersociety.org/10.1109/ICPP.2008.39 conf/icpp/2008 db/conf/icpp/icpp2008.html#KangB08 David A. Bader Aparna Chandramowlishwaran Virat Agarwal On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. 520-527 2008 ICPP https://doi.org/10.1109/ICPP.2008.41 https://doi.ieeecomputersociety.org/10.1109/ICPP.2008.41 conf/icpp/2008 db/conf/icpp/icpp2008.html#BaderCA08 Virat Agarwal Lurng-Kuo Liu David A. Bader Financial modeling on the cell broadband engine. 1-12 2008 IPDPS https://doi.org/10.1109/IPDPS.2008.4536320 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2008.4536320 conf/ipps/2008 db/conf/ipps/ipdps2008.html#AgarwalLB08 David A. Bader Kamesh Madduri SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. 1-12 2008 IPDPS https://doi.org/10.1109/IPDPS.2008.4536261 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2008.4536261 conf/ipps/2008 db/conf/ipps/ipdps2008.html#BaderM08 David A. Bader Viktor K. Prasanna DOSA: design optimizer for scientific applications. 1-5 2008 IPDPS https://doi.org/10.1109/IPDPS.2008.4536426 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2008.4536426 conf/ipps/2008 db/conf/ipps/ipdps2008.html#BaderP08 David A. Bader Sulabh Patel High performance MPEG-2 software decoder on the cell broadband engine. 1-10 2008 IPDPS https://doi.org/10.1109/IPDPS.2008.4536234 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2008.4536234 conf/ipps/2008 db/conf/ipps/ipdps2008.html#BaderP08a David A. Bader Engineering Algorithms for Computational Biology. 2008 Encyclopedia of Algorithms https://doi.org/10.1007/978-0-387-30162-4_124 reference/algo/2008 db/reference/algo/algo2008.html#Bader08 David A. Bader High Performance Algorithm Engineering for Large-scale Problems. 2008 Encyclopedia of Algorithms https://doi.org/10.1007/978-0-387-30162-4_178 reference/algo/2008 db/reference/algo/algo2008.html#Bader08a David A. Bader Sorting Signed Permutations by Reversal (Reversal Distance). 2008 Encyclopedia of Algorithms https://doi.org/10.1007/978-0-387-30162-4_383 reference/algo/2008 db/reference/algo/algo2008.html#Bader08b

Diana H. P. Low Bharadwaj Veeravalli David A. Bader On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. 1007-1017 2007 67 J. Parallel Distributed Comput. 9 https://doi.org/10.1016/j.jpdc.2007.03.007 db/journals/jpdc/jpdc67.html#LowVB07

David A. Bader Virat Agarwal Kamesh Madduri Seunghwa Kang High performance combinatorial algorithm design on the Cell Broadband Engine processor. 720-740 2007 33 Parallel Comput. 10-11 https://doi.org/10.1016/j.parco.2007.09.005 db/journals/pc/pc33.html#BaderAMK07

Sagar Dhakal Majeed M. Hayat Jorge E. Pezoa Cundong Yang David A. Bader Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. 485-497 2007 18 IEEE Trans. Parallel Distributed Syst. 4 https://doi.org/10.1109/TPDS.2007.1009 http://doi.ieeecomputersociety.org/10.1109/TPDS.2007.1009 db/journals/tpds/tpds18.html#DhakalHPYB07

Kamesh Madduri David A. Bader Jonathan W. Berry Joseph R. Crobak An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. 2007 conf/alenex/2007 ALENEX https://doi.org/10.1137/1.9781611972870.3 db/conf/alenex/alenex2007.html#MadduriBBC07 Craig A. Stewart Malinda Lingwall David A. Bader Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology. 1458 2007 conf/bibe/2007 BIBE https://doi.org/10.1109/BIBE.2007.4375776 https://doi.ieeecomputersociety.org/10.1109/BIBE.2007.4375776 db/conf/bibe/bibe2007.html#StewartLB07 David A. Bader Virat Agarwal FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. 172-184 2007 conf/hipc/2007 HiPC https://doi.org/10.1007/978-3-540-77220-0_19 db/conf/hipc/hipc2007.html#BaderA07 David A. Bader Petascale Computing for Large-Scale Graph Problems. 1 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370556 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370556 db/conf/ipps/ipdps2007.html#Bader07 David A. Bader Virat Agarwal Kamesh Madduri On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. 1-10 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370266 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370266 db/conf/ipps/ipdps2007.html#BaderAM07 David A. Bader Varun Kanade Kamesh Madduri SWARM: A Parallel Programming Framework for Multicore Processors. 1-8 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370681 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370681 db/conf/ipps/ipdps2007.html#BaderKM07 David A. Bader Kamesh Madduri A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms. 1-8 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370445 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370445 db/conf/ipps/ipdps2007.html#BaderM07 David A. Bader Viktor K. Prasanna DOSA: Design Optimizer for Scientific Applications. 1-6 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370494 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370494 db/conf/ipps/ipdps2007.html#BaderP07 Joseph R. Crobak Jonathan W. Berry Kamesh Madduri David A. Bader Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. 1-8 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370687 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370687 db/conf/ipps/ipdps2007.html#CrobakBMB07 Srinivas Aluru David A. Bader Anantharaman Kalyanaraman Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. 13 2007 conf/ipps/2007 IPDPS https://doi.org/10.1109/IPDPS.2007.370203 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370203 db/conf/ipps/ipdps2007.html#AluruBK07 Guojing Cong David A. Bader Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. 137-147 2007 conf/ispa/2007 ISPA https://doi.org/10.1007/978-3-540-74742-0_15 db/conf/ispa/ispa2007.html#CongB07 David A. Bader Petascale Computing for Large-Scale Graph Problems. 166-169 2007 PPAM https://doi.org/10.1007/978-3-540-68111-3_18 conf/ppam/2007 db/conf/ppam/ppam2007.html#Bader07 David A. Bader Shiva Kintali Kamesh Madduri Milena Mihail Approximating Betweenness Centrality. 124-137 2007 conf/waw/2007 WAW https://doi.org/10.1007/978-3-540-77004-6_10 db/conf/waw/waw2007.html#BaderKMM07 Guojing Cong David A. Bader Efficient Parallel Graph Algorithms for Multicore and Multiprocessors. 2007 Handbook of Parallel Computing https://doi.org/10.1201/9781420011296.ch26 reference/crc/2007pc db/reference/crc/pc2007.html#CongB07 Kamesh Madduri John Feo Guojing Cong David A. Bader Design of Multithreaded Algorithms for Combinatorial Problems. 2007 Handbook of Parallel Computing https://doi.org/10.1201/9781420011296.ch31 reference/crc/2007pc db/reference/crc/pc2007.html#MadduriFCB07

David A. Bader Usman Roshan Alexandros Stamatakis Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. 128-179 2006 68 Adv. Comput. db/journals/ac/ac68.html#BaderRS06 https://doi.org/10.1016/S0065-2458(06)68004-2

Guojing Cong David A. Bader Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. 854-866 2006 66 J. Parallel Distributed Comput. 6 https://doi.org/10.1016/j.jpdc.2005.12.004 db/journals/jpdc/jpdc66.html#CongB06

David A. Bader Guojing Cong Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. 1366-1378 2006 66 J. Parallel Distributed Comput. 11 https://doi.org/10.1016/j.jpdc.2006.06.001 https://www.wikidata.org/entity/Q55951523 db/journals/jpdc/jpdc66.html#BaderC06

Srinivas Aluru Nancy M. Amato David A. Bader Editorial: Special Section on High-Performance Computational Biology. 737-739 2006 17 IEEE Trans. Parallel Distributed Syst. 8 https://doi.org/10.1109/TPDS.2006.102 http://doi.ieeecomputersociety.org/10.1109/TPDS.2006.102 db/journals/tpds/tpds17.html#AluruAB06

Kamesh Madduri David A. Bader Jonathan W. Berry Joseph R. Crobak Parallel Shortest Path Algorithms for Solving Large-Scale Instances. 249-290 2006 The Shortest Path Problem conf/dimacs/dimacs74 db/conf/dimacs/dimacs74.html#MadduriBBC06 https://doi.org/10.1090/dimacs/074/10 David A. Bader Vaddadi P. Chandu Mi Yan ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. 65-73 2006 conf/icpp/2006 ICPP https://doi.org/10.1109/ICPP.2006.40 https://doi.ieeecomputersociety.org/10.1109/ICPP.2006.40 db/conf/icpp/icpp2006.html#BaderCY06 David A. Bader Kamesh Madduri Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. 523-530 2006 conf/icpp/2006 ICPP https://doi.org/10.1109/ICPP.2006.34 https://doi.ieeecomputersociety.org/10.1109/ICPP.2006.34 db/conf/icpp/icpp2006.html#BaderM06 David A. Bader Kamesh Madduri Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. 539-550 2006 conf/icpp/2006 ICPP https://doi.org/10.1109/ICPP.2006.57 https://doi.ieeecomputersociety.org/10.1109/ICPP.2006.57 db/conf/icpp/icpp2006.html#BaderM06a Matthew J. Sottile Vaddadi P. Chandu David A. Bader Performance analysis of parallel programs via message-passing graph traversal. 2006 conf/ipps/2006 IPDPS https://doi.org/10.1109/IPDPS.2006.1639321 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2006.1639321 db/conf/ipps/ipdps2006.html#SottileCB06 Srinivas Aluru David A. Bader Anantharaman Kalyanaraman M11 - High-performance computing methods for computational genomics. 225 2006 conf/sc/2006 SC https://doi.org/10.1145/1188455.1188689 db/conf/sc/sc2006.html#AluruBK06 Srinivas Aluru Nancy M. Amato David A. Bader Suchindra Bhandarkar Laxmikant V. Kalé Dan C. Marinescu Parallel Computational Biology. 357-378 2006 Parallel Processing for Scientific Computing https://doi.org/10.1137/1.9780898718133.ch19 books/siam/06/HRS2006 db/books/collections/HRS2006.html#AluruABBKM06

David A. Bader Guojing Cong A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). 994-1006 2005 65 J. Parallel Distributed Comput. 9 https://doi.org/10.1016/j.jpdc.2005.03.011 https://www.wikidata.org/entity/Q56271079 db/journals/jpdc/jpdc65.html#BaderC05

Guojing Cong David A. Bader An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs. 27-34 2005 conf/ISCApdcs/2005 PDCS db/conf/ISCApdcs/ISCApdcs2005.html#CongB05 David A. Bader Vipin Sachdeva A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. 41-48 2005 conf/ISCApdcs/2005 PDCS db/conf/ISCApdcs/ISCApdcs2005.html#BaderS05 David A. Bader Vipin Sachdeva Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. 83-84 2005 conf/csb/2005w CSB Workshops https://doi.org/10.1109/CSBW.2005.77 https://doi.ieeecomputersociety.org/10.1109/CSBW.2005.77 db/conf/csb/csbw2005.html#BaderS05 David A. Bader Kamesh Madduri Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors. 465-476 2005 conf/hipc/2005 HiPC https://doi.org/10.1007/11602569_48 db/conf/hipc/hipc2005.html#BaderM05 David A. Bader Guojing Cong John Feo On the Architectural Requirements for Efficient Execution of Graph Algorithms. 547-556 2005 conf/icpp/2005 ICPP https://doi.org/10.1109/ICPP.2005.55 https://doi.ieeecomputersociety.org/10.1109/ICPP.2005.55 db/conf/icpp/icpp2005.html#BaderCF05 Guojing Cong David A. Bader An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). 2005 conf/ipps/2005 IPDPS https://doi.org/10.1109/IPDPS.2005.100 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2005.100 https://www.wikidata.org/entity/Q56783968 db/conf/ipps/ipdps2005.html#CongB05 David A. Bader High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. 16-21 2005 conf/wea/2005 WEA https://doi.org/10.1007/11427186_3 db/conf/wea/wea2005.html#Bader05 David A. Bader Manish Parashar Sridhar Varadarajan Viktor K. Prasanna High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings HiPC Lecture Notes in Computer Science 3769 Springer 2005 3-540-30936-5 https://doi.org/10.1007/11602569 db/conf/hipc/hipc2005.html

David A. Bader Computational biology and high-performance computing. 34-41 2004 47 Commun. ACM 11 https://doi.org/10.1145/1029496.1029523 db/journals/cacm/cacm47.html#Bader04

David A. Bader Srinivas Aluru Special Issue: High Performance Computational Biology. 817-821 2004 16 Concurr. Pract. Exp. 9 https://doi.org/10.1002/cpe.865 db/journals/concurrency/concurrency16.html#BaderA04

Marc Snir David A. Bader A Framework for Measuring Supercomputer Productivity. 417-432 2004 18 Int. J. High Perform. Comput. Appl. 4 https://doi.org/10.1177/1094342004048535 db/journals/ijhpca/ijhpca18.html#SnirB04

David A. Bader An improved, randomized algorithm for parallel selection with an experimental study. 1051-1059 2004 64 J. Parallel Distributed Comput. 9 https://doi.org/10.1016/j.jpdc.2004.06.010 db/journals/jpdc/jpdc64.html#Bader04

Mohammed Javeed Zaki David A. Bader Johan Montagnat Concettina Guerra Topic 17: High Performance Bioinformatics. 988 https://doi.org/10.1007/978-3-540-27866-5_132 2004 conf/europar/2004 Euro-Par db/conf/europar/europar2004.html#ZakiBMG04 David A. Bader Kamesh Madduri A Parallel State Assignment Algorithm for Finite State Machines. 297-308 https://doi.org/10.1007/978-3-540-30474-6_34 2004 conf/hipc/2004 HiPC db/conf/hipc/hipc2004.html#BaderM04 Guojing Cong David A. Bader Lock-Free Parallel Algorithms: An Experimental Study. 516-528 https://doi.org/10.1007/978-3-540-30474-6_54 2004 conf/hipc/2004 HiPC db/conf/hipc/hipc2004.html#CongB04 Mehmet F. Su Ihab El-Kady David A. Bader Shawn-Yu Lin A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. 373-379 2004 conf/icpp/2004 ICPP https://doi.org/10.1109/ICPP.2004.1327945 https://doi.ieeecomputersociety.org/10.1109/ICPP.2004.1327945 db/conf/icpp/icpp2004.html#SuEBL04 Guojing Cong David A. Bader The Euler Tour Technique and Parallel Rooted Spanning Tree. 448-457 2004 conf/icpp/2004 ICPP https://doi.org/10.1109/ICPP.2004.1327954 https://doi.ieeecomputersociety.org/10.1109/ICPP.2004.1327954 db/conf/icpp/icpp2004.html#CongB04 David A. Bader Guojing Cong A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors. 2004 conf/ipps/2004 IPDPS https://doi.org/10.1109/IPDPS.2004.1302951 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2004.1302951 db/conf/ipps/ipdps2004-c.html#BaderC04 David A. Bader Guojing Cong Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs. 2004 conf/ipps/2004 IPDPS https://doi.org/10.1109/IPDPS.2004.1302953 https://doi.ieeecomputersociety.org/10.1109/IPDPS.2004.1302953 db/conf/ipps/ipdps2004-c.html#BaderC04a David A. Bader Ashfaq A. Khokhar Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA 1-880843-52-8 2004 PDCS ISCA db/conf/ISCApdcs/ISCApdcs2004.html

Srinivas Aluru David A. Bader Guest Editor's Introduction: Special issue on high-performance computational biology. 671-673 2003 63 J. Parallel Distributed Comput. 7-8 https://doi.org/10.1016/S0743-7315(03)00128-X db/journals/jpdc/jpdc63.html#AluruB03

Bernard M. E. Moret David A. Bader Tandy J. Warnow High-Performance Algorithm Engineering for Computational Phylogenetics. 99-111 2002 22 J. Supercomput. 1 db/journals/tjs/tjs22.html#MoretBW02 https://doi.org/10.1023/A:1014362705613

David A. Bader Sukanya Sreshta Nina R. Weisse-Bernstein Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract). 63-78 2002 conf/hipc/2002 HiPC https://doi.org/10.1007/3-540-36265-7_7 db/conf/hipc/hipc2002.html#BaderSW02 David A. Bader Srinivas Aluru Workshop Introduction. 2002 conf/ipps/2002 IPDPS https://doi.ieeecomputersociety.org/10.1109/IPDPS.2002.10028 db/conf/ipps/ipdps2002.html#BaderA02

David A. Bader Rob Pennington Applications. 181-185 2001 15 Int. J. High Perform. Comput. Appl. 2 db/journals/ijhpca/ijhpca15.html#BaderP01 https://doi.org/10.1177/109434200101500211

David A. Bader Bernard M. E. Moret Mi Yan A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. 483-491 2001 8 J. Comput. Biol. 5 db/journals/jcb/jcb8.html#BaderMY01 https://doi.org/10.1089/106652701753216503 https://www.wikidata.org/entity/Q51642336

Bernard M. E. Moret David A. Bader Tandy J. Warnow High-Performance Algorithm Engineering for Computational Phylogenetics. 1012-1021 2001 conf/iccS/2001-2 International Conference on Computational Science (2) https://doi.org/10.1007/3-540-45718-6_107 db/conf/iccS/iccS2001-2.html#MoretBW01 Bernard M. E. Moret Stacia K. Wyman David A. Bader Tandy J. Warnow Mi Yan A New Implmentation and Detailed Study of Breakpoint Analysis. 583-594 2001 conf/psb/2001 Pacific Symposium on Biocomputing http://psb.stanford.edu/psb-online/proceedings/psb01/moret.pdf db/conf/psb/psb2001.html#MoretWBWY01 David A. Bader Bernard M. E. Moret Mi Yan A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. 365-376 2001 conf/wads/2001 WADS https://doi.org/10.1007/3-540-44634-6_34 db/conf/wads/wads2001.html#BaderMY01 David A. Bader Ajith K. Illendula Bernard M. E. Moret Nina R. Weisse-Bernstein Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. 129-144 2001 conf/wae/2001 WAE https://doi.org/10.1007/3-540-44688-5_11 db/conf/wae/wae2001.html#BaderIMW01 Rob Pennington David A. Bader Barney Maccabe Patricia A. Kovatch Stephen L. Scott Tutorial A: Design and Analysis of High Performance Clusters. 1-2 2000 CLUSTER https://doi.ieeecomputersociety.org/10.1109/CLUSTER.2000.10029 conf/cluster/2000 db/conf/cluster/cluster2000.html#PenningtonBMKS00 David A. Bader Bernard M. E. Moret Peter Sanders 0001 Algorithm Engineering for Parallel Computation. 1-23 2000 conf/dagstuhl/2000ea Experimental Algorithmics https://doi.org/10.1007/3-540-36383-1_1 db/conf/dagstuhl/ea2000.html#BaderMS00

David A. Bader Joseph F. JáJá SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). 92-108 1999 58 J. Parallel Distributed Comput. 1 db/journals/jpdc/jpdc58.html#BaderJ99 https://doi.org/10.1006/jpdc.1999.1541

David A. Bader A New, Architectural Paradigm for High-performance Computing. 1999 2 Parallel Distributed Comput. Pract. 2 http://www.scpe.org/index.php/scpe/article/view/121 db/journals/scpe/scpe2.html#Bader99

David A. Bader Arthur B. Maccabe Jason R. Mastaler John K. McIver III Patricia A. Kovatch Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. 9-18 1999 conf/iwcc/1999 IWCC https://doi.org/10.1109/IWCC.1999.810804 https://doi.ieeecomputersociety.org/10.1109/IWCC.1999.810804 db/conf/iwcc/iwcc1999.html#BaderMMMK99

David R. Helman Joseph F. JáJá David A. Bader A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. 4 1998 3 ACM J. Exp. Algorithmics https://doi.org/10.1145/297096.297128 db/journals/jea/jea3.html#HelmanJB98

David R. Helman David A. Bader Joseph F. JáJá A Randomized Parallel Sorting Algorithm with an Experimental Study. 1-23 1998 52 J. Parallel Distributed Comput. 1 db/journals/jpdc/jpdc52.html#HelmanBJ98 https://doi.org/10.1006/jpdc.1998.1462

David A. Bader David R. Helman Joseph F. JáJá Practical Parallel Algorithms for Personalized Communication and Integer Sorting. 3 1996 1 ACM J. Exp. Algorithmics https://doi.org/10.1145/235141.235148 db/journals/jea/jea1.html#BaderHJ96

David A. Bader Joseph F. JáJá Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. 173-190 1996 35 J. Parallel Distributed Comput. 2 db/journals/jpdc/jpdc35.html#BaderJ96 https://doi.org/10.1006/jpdc.1996.0079

David A. Bader Joseph F. JáJá David Harwood Larry S. Davis Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. 141-168 1996 10 J. Supercomput. 2 https://doi.org/10.1007/BF00130707 db/journals/tjs/tjs10.html#BaderJHD96

David A. Bader Joseph F. JáJá Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. 292-301 1996 conf/ipps/1996 IPPS https://doi.org/10.1109/IPPS.1996.508072 https://doi.ieeecomputersociety.org/10.1109/IPPS.1996.508072 db/conf/ipps/ipps1996.html#BaderJ96 David A. Bader Joseph F. JáJá David Harwood Larry S. Davis Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study. 414-423 1996 conf/ipps/1996 IPPS https://doi.org/10.1109/IPPS.1996.508089 https://doi.ieeecomputersociety.org/10.1109/IPPS.1996.508089 db/conf/ipps/ipps1996.html#BaderJHD96 David R. Helman David A. Bader Joseph F. JáJá Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). 211-222 1996 conf/spaa/1996 SPAA db/conf/spaa/spaa96.html#HelmanBJ96 https://doi.org/10.1145/237502.237558

David A. Bader Joseph F. JáJá Rama Chellappa Scalable data parallel algorithms for texture synthesis using Gibbs random fields. 1456-1460 1995 4 IEEE Trans. Image Process. 10 https://doi.org/10.1109/83.465111 https://www.wikidata.org/entity/Q31147423 db/journals/tip/tip4.html#BaderJC95

David A. Bader Joseph F. JáJá Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract). 123-133 1995 conf/ppopp/1995 PPoPP db/conf/ppopp/ppopp95.html#BaderJ95 https://doi.org/10.1145/209936.209950 https://doi.org/10.1145/209937.209950 Peter Aaltonen Kumar Aatish Jean-Thomas Acquaviva Virat Agarwal Shabbir Ahmed 0001 Rachel Allen Srinivas Aluru Nancy M. Amato Xiaojing An Eduard Ayguadé Sounak Bagchi Elisabetta Bergamini Jonathan W. Berry Vinay Bettadapura Suchindra Bhandarkar Nadya BlissNadya T. Bliss Nicola Bombieri Robert Bond Angela Bonifati Gert-Jan Both Erica Briscoe Bartosz Bryg Aydin Buluç Paul Burkhardt Federico Busato Fernando Vera Buschmann Dan Campbell Zhou-Jian Cao Luca Cappelletti George Chacko Yunpeng Chai Aparna Chandramowlishwaran Vaddadi P. Chandu Polo ChauDuen Horng Chau Daniel G. Chavarría-Miranda Rama Chellappa Kuan-Hsun Chen Mingyu Chen 0001 Srijith Chinthalapudi Edmond Chow Mark J. Clement Guojing Cong Daniel D. Corkill Courtney D. Corley Joseph R. Crobak Loïc Cudennec Lin Dan Shubhomoy Das Daniel Dauwe Larry Davis 0001Larry S. Davis Timothy A. Davis 0001 Maryam Mehri Dehnavi Sagar Dhakal Thomas G. Dietterich Mohammad Dindoost Louis DiValentin Jack J. Dongarra Tom Drabas Zhihui Du David Ediger Ihab El-Kady Christopher Eldred Justin Ellis-Joyce Andrew Emmott Irfan A. Essa James P. Fairbanks Christos Faloutsos Robert M. Farber John Feo Alan Fern Tommaso Fontana James Fox Franz Franchetti Lisa Friedland Ryan D. Friese Haohuan Fu Kasimir Gabert Anya Ganeshan Michael Garland Rong Ge 0002 Amanda Gentzel Prasun Gera Subhodeep Ghosh Eric Gilbert John R. GilbertJohn Gilbert 0001 Vikas Goel Ivan Hendy Goenawan Henry G. Goldberg Joseph Gonzalez 0001 Garrett Gonzalez-Rivas Oded Green Alexander van der Grinten Concettina Guerra Ahmet Gündogdu Anant Gupta H. Haberkern Walter M. Hannah Song Hao Xinli Hao Philipp Harth Stephen C. Harvey David Harwood Majeed M. Hayat Ligang He Yu He Yuxiong He Christine E. Heitsch David R. Helman Bruce Hendrickson Van Emden Henson Benjamin R. Hillman Todd Hricik Jingkun Hu Daniel Huang 0003 Yihua Huang Xinning Hui Dylan Hutchison Shana Hutchison Ajith K. Illendula Jed Irvine Joseph F. JáJá David D. Jensen Karl Jiang Eric Jonardi Christopher R. Jones Joshua Jones David R. Kaeli Laxmikant V. Kalé Anantharaman KalyanaramanAnanth Kalyanaraman Varun Kanade Seunghwa Kang Rajgopal Kannan Ramakrishnan Kannan Bai Chien Kao Andrea Kappes George Karypis Oguz Kaya Jeremy Kepner Ashfaq Khokhar 0001Ashfaq A. Khokhar Euna Kim Hyesoon Kim Hyojong Kim Volodymyr V. Kindratenko Shiva Kintali Michael Kistler James Kitchen Ioannis Koutis Danai Koutra Patricia A. Kovatch Manish Kumar 0011 Manoj Kumar 0006 Jakub Kurzak Kartik Lakhotia João Alfredo Cardoso Lamy Jay-Yoon LeeJay Yoon Lee Jungmin M. Lee Victor W. Lee Charles E. Leiserson L. Ruby Leung Jason Lew Fuhuan Li Shawn-Yu Lin Malinda Lingwall Hang Liu Jason Liu 0001 Lurng-Kuo Liu Wenjie Liu Xing Liu Stéphane Louise Diana H. P. Low Andrew Lumsdaine Isaac Lyngaas Arthur B. MaccabeBarney Maccabe Anthony A. Maciejewski Kamesh Madduri Devavret Makkar Rudolph Louis Mappus IVRudolph L. Mappus IV Jussara Marandola Dan C. Marinescu Jason R. Mastaler Amrita Mathuriya Timothy G. MattsonTim Mattson Robert McCollRobert Campbell McColl John K. McIver III Adam McLaughlin Scott McMillan Paul Medvedev Alba Cristina Magalhaes Alves de Melo Alex Memory Xiaofeng Meng 0001 Duane Merrill Henning Meyerhenke Milena Mihail Sai Sri Vastav Minnal Austin Chase Minor Johan Montagnat José E. Moreira Bernard M. E. Moret Lluís-Miquel Munguía Petra Mutzel Valmik Nahata Eisha Nathan George L. Nemhauser Atieh Barati Nia Matthew R. Norman Ethan Oh Even Oldridge John D. Owens David A. Padua Pushkar R. Pande Dimitri J. Papageorgiou Manish Parashar Haesun Park Minhyuk Park Davide Pasetto Sudeep Pasricha Joseph Patchett Sanyamee Patel Sulabh Patel Palina Pauliuchenka Rob Pennington Michael Perrone Fabrizio Petrini Jorge E. Pezoa Hanspeter Pfister Robert Pierce Stephen W. PooleStephen Poole 0001 Jason Poovey Viktor K. Prasanna Kyle G. Pressel Xiao Qin 0001 Rick Quax Sanguthevar Rajasekaran Vikram Ramavarapu Matthew Reardon Bradley ReesBrad Rees Justin T. Reese Steven P. Reinhardt William N. Reynolds Bartley Richardson E. Jason Riedy Eric Robinson Oliver Alvarado Rodriguez Usman Roshan Senjuti Basu Roy Vipin Sachdeva Geoffrey SandersGeoffrey D. Sanders Peter Sanders 0001 Piyush Sao Stephen W. Schaeffer Baruch Schieber Christian Schulz 0003 Stephen L. Scott Ted E. Senator Yufen Shao M. Shewarega Jun Shirako Howard Jay Siegel Yogesh L. SimmhanYogesh Simmhan Shreyas G. Singapura Peter M. A. Sloot Quinn Snell Marc Snir Matthew J. Sottile Jeffrey Spaan Sarat Sreepathi Sukanya Sreshta Harinarayan Asoori Sriram Alexandros Stamatakis J. Stegmaier Craig A. Stewart Michael StonebrakerMike Stonebraker Mehmet F. Su Hongyang Sun 0001 Yankui Sun Shel Swenson Gábor Szárnyas Jijun Tang Jian Tao Mark A. Taylor Alok Tripathy Jakob Troidl Philippas Tsigas Srinivas C. Turaga Soroush Vahidi Sridhar Varadarajan Ana Lucia Varbanescu Bharadwaj Veeravalli Fernando Vera Richard W. Vuduc Dorothea Wagner Steve Wallach Man Wang Tandy J. Warnow Alex Watkins Jianyan Wei Lora Weiss Nina R. Weisse-Bernstein Erik Welch Weng-Keen Wong Chao Wu Stacia K. Wyman Yu Xiao Zehui Xie Chen Xu Mi Yan Carl Yang 0002 Chen Yang 0009 Cundong Yang Guangwen Yang 0002 Quan Yang Yin Ye Zhaoming Yin Andrew Yoo Yang You 0001 Jeffrey Young 0001 William T. Young Xingqiu Yuan Mohammed J. ZakiMohammed Javeed Zaki Anita Zakrzewska Marcin Zalewski Hanqing Zeng Huazhe Zhang Sen Zhang 0007 Xukang Zhang Shijie Zhou 0001 Jaroslaw Zola