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ORCIDBibTeX records: Frederik Coppens
@article{DBLP:journals/patterns/AlperDDABBBCCFFHJJPPPPS25,
author = {Pinar Alper and
Flora D'anna and
Bert Droesbeke and
Munazah Andrabi and
Rafael Andrade Buono and
Federico Bianchini and
Korbinian B{\"{o}}sl and
Ishwar Chandramouliswaran and
Martin Cook and
Daniel Faria and
Nazeefa Fatima and
Rob W. W. Hooft and
Niclas Jareborg and
Mijke Jetten and
Diana Pilvar and
Gil Poires{-}Oliveira and
Marina Popleteeva and
Laura Portell{-}Silva and
Jan Slifka and
Marek Such{\'{a}}nek and
Celia W. G. van Gelder and
Danielle Welter and
Ulrike Wittig and
Frederik Coppens and
Carole A. Goble},
title = {RDMkit: {A} research data management toolkit for life sciences},
journal = {Patterns},
volume = {6},
number = {10},
pages = {101345},
year = {2025},
url = {https://doi.org/10.1016/j.patter.2025.101345},
doi = {10.1016/J.PATTER.2025.101345},
timestamp = {Tue, 21 Apr 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/AlperDDABBBCCFFHJJPPPPS25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2505-15988,
author = {Sean R. Wilkinson and
Johan Gustafsson and
Finn Bacall and
Khalid Belhajjame and
Salvador Capella and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez Gonz{\'{a}}lez and
Jacob Fosso{-}Tande and
Luiz Gadelha and
Daniel Garijo and
Patricia Grubel and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Farah Zaib Khan and
Sehrish Kanwal and
Simone Leo and
Stuart Owen and
Luca Pireddu and
Line Pouchard and
Laura Rodr{\'{\i}}guez{-}Navas and
Beatriz Serrano{-}Solano and
Stian Soiland{-}Reyes and
Baiba Vilne and
Alan R. Williams and
Merridee A. Wouters and
Frederik Coppens and
Carole A. Goble},
title = {An Ecosystem of Services for {FAIR} Computational Workflows},
journal = {CoRR},
volume = {abs/2505.15988},
year = {2025},
url = {https://doi.org/10.48550/arXiv.2505.15988},
doi = {10.48550/ARXIV.2505.15988},
eprinttype = {arXiv},
eprint = {2505.15988},
timestamp = {Wed, 25 Feb 2026 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2505-15988.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2410-06941,
author = {Johan Gustafsson and
Sean R. Wilkinson and
Finn Bacall and
Luca Pireddu and
Stian Soiland{-}Reyes and
Simone Leo and
Stuart Owen and
Nick S. Juty and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Tom Brown and
Herv{\'{e}} M{\'{e}}nager and
Salvador Capella{-}Guti{\'{e}}rrez and
Frederik Coppens and
Carole A. Goble},
title = {WorkflowHub: a registry for computational workflows},
journal = {CoRR},
volume = {abs/2410.06941},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2410.06941},
doi = {10.48550/ARXIV.2410.06941},
eprinttype = {arXiv},
eprint = {2410.06941},
timestamp = {Wed, 25 Feb 2026 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2410-06941.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23,
author = {Romain David and
Audrey S. Richard and
Claire Connellan and
Katharina B. Lauer and
Maria Luisa Chiusano and
Carole A. Goble and
Martin Houde and
Isabel Kemmer and
Antje Keppler and
Philippe Lieutaud and
Christian Ohmann and
Maria Panagiotopoulou and
Sara Raza Khan and
Arina Rybina and
Stian Soiland{-}Reyes and
Charlotte Wit and
Rudolf Wittner and
Rafael Andrade Buono and
Sarah Arnaud Marsh and
Pauline Audergon and
Dylan Bonfils and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Remi Charrel and
Frederik Coppens and
Wolfgang Fecke and
Claudia Filippone and
Eva Garc{\'{\i}}a {\'{A}}lvarez and
Sheraz Gul and
Henning Hermjakob and
Katja Herzog and
Petr Holub and
Lukasz Kozera and
Allyson L. Lister and
Jos{\'{e}} L{\'{o}}pez{-}Coronado and
B{\'{e}}n{\'{e}}dicte Madon and
Kurt Majcen and
William Martin and
Wolfgang M{\"{u}}ller and
Elli Papadopoulou and
Christine M. A. Prat and
Paolo Romano and
Susanna{-}Assunta Sansone and
Gary Saunders and
Niklas Blomberg and
Jonathan Ewbank},
title = {Umbrella Data Management Plans to Integrate {FAIR} Data: Lessons From
the ISIDORe and {BY-COVID} Consortia for Pandemic Preparedness},
journal = {Data Sci. J.},
volume = {22},
pages = {35},
year = {2023},
url = {https://doi.org/10.5334/dsj-2023-035},
doi = {10.5334/DSJ-2023-035},
timestamp = {Tue, 02 Dec 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23,
author = {Saskia D. Hiltemann and
Helena Rasche and
Simon L. Gladman and
Hans{-}Rudolf Hotz and
Delphine Larivi{\`{e}}re and
Daniel J. Blankenberg and
Pratik D. Jagtap and
Thomas Wollmann and
Anthony Bretaudeau and
Nadia Gou{\'{e}} and
Timothy J. Griffin and
Coline Royaux and
Yvan Le Bras and
Subina P. Mehta and
Anna Syme and
Frederik Coppens and
Bert Droesbeke and
Nicola Soranzo and
Wendi A. Bacon and
Fotis E. Psomopoulos and
Crist{\'{o}}bal Gallardo{-}Alba and
John Davis and
Melanie Christine F{\"{o}}ll and
Matthias Fahrner and
Maria A. Doyle and
Beatriz Serrano{-}Solano and
Anne Fouilloux and
Peter van Heusden and
Wolfgang Maier and
Dave Clements and
Florian Heyl and
The Galaxy Team and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
B{\'{e}}r{\'{e}}nice Batut},
title = {Galaxy Training: {A} powerful framework for teaching!},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {1},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010752},
doi = {10.1371/JOURNAL.PCBI.1010752},
timestamp = {Thu, 02 Jul 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HiltemannRGHLBJWBGGRBMSCDSBPGDFF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/FatimaABBWGC23,
author = {Nazeefa Fatima and
Pinar Alper and
Frederico Bianchini and
Korbinian B{\"{o}}sl and
Ulrike Wittig and
Carole A. Goble and
Frederik Coppens},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {RDMkit: The Research Data Management Toolkit for Life Sciences},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.251},
doi = {10.52825/CORDI.V1I.251},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cordi/FatimaABBWGC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/GobleBSOEDMR0GL23,
author = {Carole A. Goble and
Finn Bacall and
Stian Soiland{-}Reyes and
Stuart Owen and
Ignacio Eguinoa and
Bert Droesbeke and
Herv{\'{e}} M{\'{e}}nager and
Laura Rodr{\'{\i}}guez{-}Navas and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Simone Leo and
Luca Pireddu and
Michael R. Crusoe and
Johan Gustafsson and
Salvador Capella{-}Guti{\'{e}}rrez and
Frederik Coppens},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {The EOSC-Life Workflow Collaboratory for the Life Sciences},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.352},
doi = {10.52825/CORDI.V1I.352},
timestamp = {Wed, 03 Jun 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cordi/GobleBSOEDMR0GL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-00019,
author = {Rafael Ferreira da Silva and
Rosa M. Badia and
Venkat Bala and
Debbie Bard and
Peer{-}Timo Bremer and
Ian Buckley and
Silvina Ca{\'{\i}}no{-}Lores and
Kyle Chard and
Carole A. Goble and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Manish Parashar and
Fr{\'{e}}d{\'{e}}ric Suter and
Nick Tyler and
Thomas D. Uram and
Ilkay Altintas and
Stefan Andersson and
William Arndt and
Juan Aznar and
Jonathan Bader and
Bartosz Balis and
Chris Blanton and
Kelly Rosa Braghetto and
Aharon Brodutch and
Paul Brunk and
Henri Casanova and
Alba Cervera{-}Lierta and
Justin Chigu and
Tain{\~{a}} Coleman and
Nick Collier and
Iacopo Colonnelli and
Frederik Coppens and
Michael R. Crusoe and
Will Cunningham and
Bruno de Paula Kinoshita and
Paolo Di Tommaso and
Charles M. Doutriaux and
Matthew Downton and
Wael R. Elwasif and
Bjoern Enders and
Chris Erdmann and
Thomas Fahringer and
Ludmilla Figueiredo and
Rosa Filgueira and
Martin Foltin and
Anne Fouilloux and
Luiz Gadelha and
Andy Gallo and
Artur Garc{\'{\i}}a{-}S{\'{a}}ez and
et al.},
title = {Workflows Community Summit 2022: {A} Roadmap Revolution},
journal = {CoRR},
volume = {abs/2304.00019},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.00019},
doi = {10.48550/ARXIV.2304.00019},
eprinttype = {arXiv},
eprint = {2304.00019},
timestamp = {Fri, 04 Jul 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-00019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiyanageBDEFGHJ22,
author = {Isuru Udara Liyanage and
Tony Burdett and
Bert Droesbeke and
Karoly Erdos and
Rolando Fernandez and
Alasdair J. G. Gray and
Muhammad Haseeb and
Simon Jupp and
Flavia Penim and
Cyril Pommier and
Philippe Rocca{-}Serra and
M{\'{e}}lanie Courtot and
Frederik Coppens},
title = {{ELIXIR} biovalidator for semantic validation of life science metadata},
journal = {Bioinform.},
volume = {38},
number = {11},
pages = {3141--3142},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac195},
doi = {10.1093/BIOINFORMATICS/BTAC195},
timestamp = {Sun, 19 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiyanageBDEFGHJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datasci/Soiland-ReyesSC22,
author = {Stian Soiland{-}Reyes and
Peter Sefton and
Merc{\`{e}} Crosas and
Leyla Jael Castro and
Frederik Coppens and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Daniel Garijo and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Marco La Rosa and
Simone Leo and
Eoghan {\'{O}} Carrag{\'{a}}in and
Marc Portier and
Ana Trisovic and
RO{-}Crate Community and
Paul Groth and
Carole A. Goble},
title = {Packaging research artefacts with RO-Crate},
journal = {Data Sci.},
volume = {5},
number = {2},
pages = {97--138},
year = {2022},
url = {https://doi.org/10.3233/ds-210053},
doi = {10.3233/DS-210053},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datasci/Soiland-ReyesSC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/Serrano-SolanoF22,
author = {Beatriz Serrano{-}Solano and
Anne Fouilloux and
Ignacio Eguinoa and
Mat{\'{u}}s Kalas and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Frederik Coppens},
title = {Galaxy: {A} Decade of Realising {CWFR} Concepts},
journal = {Data Intell.},
volume = {4},
number = {2},
pages = {358--371},
year = {2022},
url = {https://doi.org/10.1162/dint\_a\_00136},
doi = {10.1162/DINT\_A\_00136},
timestamp = {Sun, 02 Nov 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dint/Serrano-SolanoF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BelSWKBCV22,
author = {Michiel Van Bel and
Francesca Silvestri and
Eric M. Weitz and
Lukasz Kreft and
Alexander Botzki and
Frederik Coppens and
Klaas Vandepoele},
title = {{PLAZA} 5.0: extending the scope and power of comparative and functional
genomics in plants},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1468--1474},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1024},
doi = {10.1093/NAR/GKAB1024},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BelSWKBCV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AfganNGBGSOMLSF22,
author = {Enis Afgan and
Anton Nekrutenko and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Daniel J. Blankenberg and
Jeremy Goecks and
Michael C. Schatz and
Alexander E. Ostrovsky and
Alexandru Mahmoud and
Andrew J. Lonie and
Anna Syme and
Anne Fouilloux and
Anthony Bretaudeau and
Anup Kumar and
Arthur C. Eschenlauer and
Assunta D. Desanto and
Aysam Guerler and
Beatriz Serrano{-}Solano and
B{\'{e}}r{\'{e}}nice Batut and
Bradley W. Langhorst and
Bridget Carr and
Bryan A. Raubenolt and
Cameron J. Hyde and
Catherine J. Bromhead and
Christopher B. Barnett and
Coline Royaux and
Crist{\'{o}}bal Gallardo and
Daniel J. Fornika and
Dannon Baker and
Dave Bouvier and
Dave Clements and
David A. de Lima Morais and
David Lopez Tabernero and
Delphine Larivi{\`{e}}re and
Engy Nasr and
Federico Zambelli and
Florian Heyl and
Fotis E. Psomopoulos and
Frederik Coppens and
Gareth R. Price and
Gianmauro Cuccuru and
Gildas Le Corguill{\'{e}} and
Gregory Von Kuster and
Gulsum Gudukbay and
Helena Rasche and
Hans{-}Rudolf Hotz and
Ignacio Eguinoa and
Igor V. Makunin and
Isuru Ranawaka and
James Taylor and
Jayadev Joshi and
Jennifer Hillman{-}Jackson and
John Chilton and
Kaivan Kamali and
Keith Suderman and
Krzysztof Poterlowicz and
Yvan Le Bras and
Lucille Lopez{-}Delisle and
Luke Sargent and
Madeline E. Bassetti and
Marco Antonio Tangaro and
Marius van den Beek and
Martin Cech and
Matthias Bernt and
Matthias Fahrner and
Mehmet Tekman and
Melanie Christine F{\"{o}}ll and
Michael R. Crusoe and
Miguel Roncoroni and
Natalie Kucher and
Nate Coraor and
Nicholas Stoler and
Nick Rhodes and
Nicola Soranzo and
Niko Pinter and
Nuwan Goonasekera and
Pablo A. Moreno and
Pavankumar Videm and
Petera Melanie and
Pietro Mandreoli and
Pratik D. Jagtap and
Qiang Gu and
Ralf J. M. Weber and
Ross Lazarus and
Ruben H. P. Vorderman and
Saskia D. Hiltemann and
Sergey Golitsynskiy and
Shilpa Garg and
Simon A. Bray and
Simon L. Gladman and
Simone Leo and
Subina P. Mehta and
Timothy J. Griffin and
Vahid Jalili and
Yves Vandenbrouck and
Victor Wen and
Vijay K. Nagampalli and
Wendi A. Bacon and
Willem L. De Koning and
Wolfgang Maier and
Peter J. Briggs},
title = {The Galaxy platform for accessible, reproducible and collaborative
biomedical analyses: 2022 update},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {345--351},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac247},
doi = {10.1093/NAR/GKAC247},
timestamp = {Sun, 21 Jun 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AfganNGBGSOMLSF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BrackCSOLWGDCGE22,
author = {Paul Brack and
Peter Crowther and
Stian Soiland{-}Reyes and
Stuart Owen and
Douglas Lowe and
Alan R. Williams and
Quentin Groom and
Mathias Dillen and
Frederik Coppens and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Ignacio Eguinoa and
Philip Ewels and
Carole A. Goble},
title = {Ten simple rules for making a software tool workflow-ready},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {3},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1009823},
doi = {10.1371/JOURNAL.PCBI.1009823},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BrackCSOLWGDCGE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoncoroniDERDYG21,
author = {Miguel Roncoroni and
Bert Droesbeke and
Ignacio Eguinoa and
Kim De Ruyck and
Flora D'anna and
Dilmurat Yusuf and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Rolf Backofen and
Frederik Coppens},
title = {A SARS-CoV-2 sequence submission tool for the European Nucleotide
Archive},
journal = {Bioinform.},
volume = {37},
number = {21},
pages = {3983--3985},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab421},
doi = {10.1093/BIOINFORMATICS/BTAB421},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RoncoroniDERDYG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/works-ws/SilvaCCABBCCNEF21,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
booktitle = {2021 {IEEE} Workshop on Workflows in Support of Large-Scale Science
(WORKS), St. Louis, MO, USA, November 15, 2021},
pages = {81--90},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/WORKS54523.2021.00016},
doi = {10.1109/WORKS54523.2021.00016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/works-ws/SilvaCCABBCCNEF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-05177,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Tain{\~{a}} Coleman and
Dan Laney and
Dong H. Ahn and
Shantenu Jha and
Dorran Howell and
Stian Soiland{-}Reyes and
Ilkay Altintas and
Douglas Thain and
Rosa Filgueira and
Yadu N. Babuji and
Rosa M. Badia and
Bartosz Balis and
Silvina Ca{\'{\i}}no{-}Lores and
Scott Callaghan and
Frederik Coppens and
Michael R. Crusoe and
Kaushik De and
Frank Di Natale and
Tu Mai Anh Do and
Bjoern Enders and
Thomas Fahringer and
Anne Fouilloux and
Grigori Fursin and
Alban Gaignard and
Alex Ganose and
Daniel Garijo and
Sandra Gesing and
Carole A. Goble and
Adil Hasan and
Sebastiaan Huber and
Daniel S. Katz and
Ulf Leser and
Douglas Lowe and
Bertram Lud{\"{a}}scher and
Ketan Maheshwari and
Maciej Malawski and
Rajiv Mayani and
Kshitij Mehta and
Andr{\'{e}} Merzky and
Todd S. Munson and
Jonathan Ozik and
Lo{\"{\i}}c Pottier and
Sashko Ristov and
Mehdi Roozmeh and
Renan Souza and
Fr{\'{e}}d{\'{e}}ric Suter and
Benjam{\'{\i}}n Tovar and
Matteo Turilli and
Karan Vahi and
Alvaro Vidal{-}Torreira and
Wendy R. Whitcup and
Michael Wilde and
Alan R. Williams and
Matthew Wolf and
Justin M. Wozniak},
title = {Workflows Community Summit: Advancing the State-of-the-art of Scientific
Workflows Management Systems Research and Development},
journal = {CoRR},
volume = {abs/2106.05177},
year = {2021},
url = {https://arxiv.org/abs/2106.05177},
eprinttype = {arXiv},
eprint = {2106.05177},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-05177.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-06503,
author = {Stian Soiland{-}Reyes and
Peter Sefton and
Merc{\`{e}} Crosas and
Leyla Jael Castro and
Frederik Coppens and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Daniel Garijo and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Marco La Rosa and
Simone Leo and
Eoghan {\'{O}} Carrag{\'{a}}in and
Marc Portier and
Ana Trisovic and
RO{-}Crate Community and
Paul Groth and
Carole A. Goble},
title = {Packaging research artefacts with RO-Crate},
journal = {CoRR},
volume = {abs/2108.06503},
year = {2021},
url = {https://arxiv.org/abs/2108.06503},
eprinttype = {arXiv},
eprint = {2108.06503},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-06503.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-02168,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
journal = {CoRR},
volume = {abs/2110.02168},
year = {2021},
url = {https://arxiv.org/abs/2110.02168},
eprinttype = {arXiv},
eprint = {2110.02168},
timestamp = {Sun, 20 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-02168.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/Coppens19,
author = {Frederik Coppens},
title = {The Data Life Cycle in Practice: an Infrastructure Point of View},
booktitle = {Proceedings of Workshop on Research Objects (RO2019), San Diego, CA,
USA, September 24, 2019},
year = {2019},
url = {https://doi.org/10.5281/zenodo.3270824},
doi = {10.5281/ZENODO.3270824},
timestamp = {Thu, 16 Jul 2020 14:32:50 +0200},
biburl = {https://dblp.org/rec/conf/ro/Coppens19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BelDVKBPCV18,
author = {Michiel Van Bel and
Tim Diels and
Emmelien Vancaester and
Lukasz Kreft and
Alexander Botzki and
Yves Van de Peer and
Frederik Coppens and
Klaas Vandepoele},
title = {{PLAZA} 4.0: an integrative resource for functional, evolutionary
and comparative plant genomics},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D1190--D1196},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1002},
doi = {10.1093/NAR/GKX1002},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BelDVKBPCV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiettinenIKPBBC18,
author = {Karel Miettinen and
Sabrina I{\~{n}}igo and
Lukasz Kreft and
Jacob Pollier and
Christof De Bo and
Alexander Botzki and
Frederik Coppens and
S{\o}ren Bak and
Alain Goossens},
title = {The TriForC database: a comprehensive up-to-date resource of plant
triterpene biosynthesis},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D586--D594},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx925},
doi = {10.1093/NAR/GKX925},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MiettinenIKPBBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreftBCVB17,
author = {Lukasz Kreft and
Alexander Botzki and
Frederik Coppens and
Klaas Vandepoele and
Michiel Van Bel},
title = {PhyD3: a phylogenetic tree viewer with extended phyloXML support for
functional genomics data visualization},
journal = {Bioinform.},
volume = {33},
number = {18},
pages = {2946--2947},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx324},
doi = {10.1093/BIOINFORMATICS/BTX324},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KreftBCVB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
author = {Jon C. Ison and
Kristoffer Rapacki and
Herv{\'{e}} M{\'{e}}nager and
Mat{\'{u}}s Kalas and
Emil Rydza and
Piotr Chmura and
Christian Anthon and
Niall Beard and
Karel Berka and
Dan M. Bolser and
Tim Booth and
Anthony Bretaudeau and
Jan Brezovsky and
Rita Casadio and
Gianni Cesareni and
Frederik Coppens and
Michael Cornell and
Gianmauro Cuccuru and
Kristian Davidsen and
Gianluca Della Vedova and
Tunca Dogan and
Olivia Doppelt{-}Azeroual and
Laura Emery and
Elisabeth Gasteiger and
Thomas Gatter and
Tatyana Goldberg and
Marie Grosjean and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Manuela Helmer{-}Citterich and
Hans Ienasescu and
Vassilios Ioannidis and
Martin Closter Jespersen and
Rafael C. Jim{\'{e}}nez and
Nick S. Juty and
Peter Juvan and
Maximilian Koch and
Camille Laibe and
Jing{-}Woei Li and
Luana Licata and
Fabien Mareuil and
Ivan Micetic and
Rune M{\o}llegaard Friborg and
S{\'{e}}bastien Moretti and
Chris Morris and
Steffen M{\"{o}}ller and
Aleksandra Nenadic and
Hedi Peterson and
Giuseppe Profiti and
Peter M. Rice and
Paolo Romano and
Paola Roncaglia and
Rabie Saidi and
Andrea Schafferhans and
Veit Schw{\"{a}}mmle and
Callum Smith and
Maria Maddalena Sperotto and
Heinz Stockinger and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Silvio C. E. Tosatto and
Victor de la Torre and
Paolo Uva and
Allegra Via and
Guy Yachdav and
Federico Zambelli and
Gert Vriend and
Burkhard Rost and
Helen E. Parkinson and
Peter L{\o}ngreen and
S{\o}ren Brunak},
title = {Tools and data services registry: a community effort to document bioinformatics
resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {38--47},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1116},
doi = {10.1093/NAR/GKV1116},
timestamp = {Tue, 21 Apr 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/HendrickxBCDHKMVV08,
author = {Iris Hendrickx and
Gosse Bouma and
Frederik Coppens and
Walter Daelemans and
V{\'{e}}ronique Hoste and
Geert Kloosterman and
Anne{-}Marie Mineur and
Joeri Van Der Vloet and
Jean{-}Luc Verschelde},
title = {A Coreference Corpus and Resolution System for Dutch},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
publisher = {European Language Resources Association},
year = {2008},
url = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/49.html},
timestamp = {Mon, 19 Aug 2019 15:22:28 +0200},
biburl = {https://dblp.org/rec/conf/lrec/HendrickxBCDHKMVV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/otm/ZhaoKKCVTM04,
author = {Gang Zhao and
John Kingston and
Koen Kerremans and
Frederik Coppens and
Ruben Verlinden and
Rita Temmerman and
Robert Meersman},
editor = {Robert Meersman and
Zahir Tari and
Angelo Corsaro},
title = {Engineering an Ontology of Financial Securities Fraud},
booktitle = {On the Move to Meaningful Internet Systems 2004: {OTM} 2004 Workshops:
{OTM} Confederated International Workshops and Posters, GADA, JTRES,
MIOS, WORM, WOSE, PhDS, and {INTEROP} 2004, Agia Napa, Cyprus, October
25-29, 2004. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3292},
pages = {605--620},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30470-8\_73},
doi = {10.1007/978-3-540-30470-8\_73},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/otm/ZhaoKKCVTM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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