Disentangled diffusion model for 3D molecular generation with protein-ligand interaction priors.

Hongyang Yu Hongyang Yu 0001 Peng Cheng Laboratory, Shenzhen, China Harbin Institute of Technology, School of Computer Science and Technology, Harbin, China https://ieeexplore.ieee.org/author/37086009158 https://orcid.org/0000-0003-0036-531X

Zhilin Huang Ling Yang 0006 Chujun Qin Yifei Xing 0001 Hongyang Yu Xiangxin Zhou Bing Zheng Yu Wang 0027 Xin Gao 0001 Wenming Yang Disentangled diffusion model for 3D molecular generation with protein-ligand interaction priors. 2026 42 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btag165 db/journals/bioinformatics/bioinformatics42.html#HuangYQXYZZWGY26 streams/journals/bioinformatics

Bin Yang Yujie You Liang Jin Hongyang Yu Le Zhang 0004 CryoPromptSeg: prompt-guided segmentation with integrated denoising for cryo-EM particle picking. 2026 42 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btag327 db/journals/bioinformatics/bioinformatics42.html#YangYJYZ26 streams/journals/bioinformatics

Feng Ding Shu Fu Hongyang Yu Yujie Tang 0001 Boya Di Fei Richard Yu Joint Optimization of Beamforming, Subchannel, and Power Allocation in Multi-Satellite BH-NOMA Communication System. 2026 February 3396-3400 75 IEEE Trans. Veh. Technol. 2 https://doi.org/10.1109/TVT.2025.3598114 db/journals/tvt/tvt75.html#DingFYTDY26 streams/journals/tvt

Haodong Liu Jinglei Jiang Yaoming Huang Tianyang Cao Tianxiang Ji Hongyang Yu Wenjin Wang 0001 Rui Ding 0002 Beam Domain Random Access for NB-IoT Integrated LEO Satellite Communications. 13907-13921 2025 may15 12 IEEE Internet Things J. 10 https://doi.org/10.1109/JIOT.2025.3525984 db/journals/iotj/iotj12.html#LiuJHCJYWD25 streams/journals/iotj

Hongyang Yu Hao Wang Yadong Liu 0001 Yadong Wang 0001 Tao Jiang 0021 SimPG: A Pangenome-Guided Population-Specific Human Genome Simulation Tool. 7735-7742 2025 BIBM https://doi.org/10.1109/BIBM66473.2025.11356531 conf/bibm/2025 db/conf/bibm/bibm2025.html#YuWLWJ25

Zhuoxiao Chen Hongyang Yu Ying Xu Yadan Luo Long Duong Yuan-Fang Li OraPO: Oracle-educated Reinforcement Learning for Data-efficient and Factual Radiology Report Generation. 2025 September abs/2509.18600 CoRR https://doi.org/10.48550/arXiv.2509.18600 db/journals/corr/corr2509.html#abs-2509-18600 streams/journals/corr

Hongyang Yu Hongjiang C. Yu TensorVAE: a simple and efficient generative model for conditional molecular conformation generation. 2024 2024 Trans. Mach. Learn. Res. https://openreview.net/forum?id=rQqzt4gYcc db/journals/tmlr/tmlr2024.html#YuY24

Hongyang Yu Hongjiang C. Yu Powerful molecule generation with simple ConvNet. 3438-3443 2022 38 Bioinform. 13 https://doi.org/10.1093/bioinformatics/btac332 db/journals/bioinformatics/bioinformatics38.html#YuY22

Yangyi Pu Hongyang Yu ResUnet: A Fully Convolutional Network for Speech Enhancement in Industrial Robots. 42-50 2022 IEA/AIE https://doi.org/10.1007/978-3-031-08530-7_4 conf/ieaaie/2022 db/conf/ieaaie/ieaaie2022.html#PuY22 Haozhe Feng Hongyang Yu Laser Positioning Method of Intelligent Building Plastering Robot. 397-402 2021 ICCT https://doi.org/10.1109/ICCT52962.2021.9657861 conf/icct/2021 db/conf/icct/icct2021.html#FengY21 Feijie Wang Hongyang Yu Lingxiao He Yongqiang Bao Research on a Station Express Model of a Single Loop Mode Based on Implicit Numeration. 14-17 2020 ICITE https://doi.org/10.1109/ICITE50838.2020.9231422 conf/icite/2020 db/conf/icite/icite2020.html#WangYHB20 Xue Yang Wanjun Huang Hongyang Yu Research on Optimization of Object Detection Technology Based on Convolutional Neural Network. 13-16 2020 ISCID https://doi.org/10.1109/ISCID51228.2020.00010 conf/iscid/2020 db/conf/iscid/iscid2020.html#YangHY20 Hengyu Yin Hongyang Yu Incremental SFM 3D reconstruction based on monocular. 17-21 2020 ISCID https://doi.org/10.1109/ISCID51228.2020.00011 conf/iscid/2020 db/conf/iscid/iscid2020.html#YinY20 Yongjing Liu Hongyang Yu A positioning method of intelligent plastering robot head. 318-321 2020 ISCID https://doi.org/10.1109/ISCID51228.2020.00077 conf/iscid/2020 db/conf/iscid/iscid2020.html#LiuY20

Michael E. Cholette Hongyang Yu Pietro Borghesani Lin Ma Geoff Kent Degradation modeling and condition-based maintenance of boiler heat exchangers using gamma processes. 184-196 2019 183 Reliab. Eng. Syst. Saf. https://doi.org/10.1016/j.ress.2018.11.023 https://www.wikidata.org/entity/Q128898003 db/journals/ress/ress183.html#CholetteYBMK19

Sinda Rebello Hongyang Yu Lin Ma An integrated approach for real-time hazard mitigation in complex industrial processes. 297-309 2019 188 Reliab. Eng. Syst. Saf. https://doi.org/10.1016/j.ress.2019.03.037 https://www.wikidata.org/entity/Q128183906 db/journals/ress/ress188.html#RebelloYM19

Sinda Rebello Hongyang Yu Lin Ma An integrated approach for system functional reliability assessment using Dynamic Bayesian Network and Hidden Markov Model. 124-135 2018 180 Reliab. Eng. Syst. Saf. https://doi.org/10.1016/j.ress.2018.07.002 https://www.wikidata.org/entity/Q129546183 db/journals/ress/ress180.html#RebelloYM18

Hongyang Yu A Novel Semiparametric Hidden Markov Model for Process Failure Mode Identification. 506-518 2018 15 IEEE Trans Autom. Sci. Eng. 2 https://doi.org/10.1109/TASE.2016.2636292 db/journals/tase/tase15.html#Yu18

Bingshan Hu Hongyang Yu Hongrun Lu Yongjie Chang Design of Mechanism and Control System for a Lightweight Lower Limb Exoskeleton. 83-87 2018 CRC https://doi.org/10.1109/CRC.2018.00025 conf/crc/2018 db/conf/crc/crc2018.html#HuYLC18

Hongyang Yu Faisal Khan 0001 Vikram Garaniya Risk-based fault detection using Self-Organizing Map. 82-96 2015 139 Reliab. Eng. Syst. Saf. https://doi.org/10.1016/j.ress.2015.02.011 db/journals/ress/ress139.html#YuKG15

Hongyang Yu Nianmin Yao Shaobin Cai Qilong Han Analyzing the performance of Aloha in string multi-hop underwater acoustic sensor networks. 65 2013 2013 EURASIP J. Wirel. Commun. Netw. https://doi.org/10.1186/1687-1499-2013-65 https://www.wikidata.org/entity/Q59301645 db/journals/ejwcn/ejwcn2013.html#YuYCH13

Zhenyu Wu Hongyang Yu Bin Tang Chang Wen Chen Adaptive Initial Quantization Parameter Determination for H.264/AVC Video Transcoding. 277-284 2012 58 IEEE Trans. Broadcast. 2 https://doi.org/10.1109/TBC.2011.2182430 db/journals/tbc/tbc58.html#WuYTC12

Nianmin Yao Hongyang Yu Shaobin Cai Qilong Han Performance Analysis of Aloha for String Multi-hop Underwater Acoustic Sensor Networks. 694-704 2012 WASA https://doi.org/10.1007/978-3-642-31869-6_61 conf/wasa/2012 db/conf/wasa/wasa2012.html#YaoYCH12 Hongyang Yu Qianli Gao Analysis of Influencing Factors of Taobao Consumer Behavior. 17 2012 WHICEB http://aisel.aisnet.org/whiceb2011/17 conf/whiceb/2012 db/conf/whiceb/whiceb2012.html#YuG12

Zhenyu Wu Hongyang Yu Bin Tang A Novel Feedback Approach for Image/Video sampling Systems' Performances Improvement. 138-147 2010 5 J. Convergence Inf. Technol. 5 http://www.aicit.org/jcit/ppl/Part16_Binder10.pdf db/journals/jcit/jcit5.html#WuYT10

Zhenyu Wu Hongyang Yu Chang Wen Chen A New Hybrid DCT-Wiener-Based Interpolation Scheme for Video Intra Frame Up-Sampling. 827-830 2010 17 IEEE Signal Process. Lett. 10 https://doi.org/10.1109/LSP.2010.2059700 db/journals/spl/spl17.html#WuYC10

Guangde Wang Fang Miao WenJia Zhang Hongyang Yu A Dynamic and Interactive Diagnosing and Testing Method for Development of Digital TV Receiver System. 1107-1112 2007 SNPD (3) conf/snpd/2007 db/conf/snpd/snpd2007-3.html#WangMZY07 https://doi.org/10.1109/SNPD.2007.88 https://doi.ieeecomputersociety.org/10.1109/SNPD.2007.88 Zhenyu Wu Hongyang Yu Bin Tang Hong Hu Performance Evaluation of Transcoding Algorithms for MPEG-2 to AVS-P2. 643-646 2006 conf/iih-msp/2006 IIH-MSP https://doi.org/10.1109/IIH-MSP.2006.265084 https://doi.ieeecomputersociety.org/10.1109/IIH-MSP.2006.141 db/conf/iih-msp/iih-msp2006.html#WuYTH06 Yongqiang Bao Pietro Borghesani Shaobin Cai Tianyang Cao Yongjie Chang Chang Wen Chen Zhuoxiao Chen Michael E. Cholette Boya Di Feng Ding Rui Ding 0002 Long Duong Haozhe Feng Shu Fu Qianli Gao Xin Gao 0001 Vikram Garaniya Qilong Han Lingxiao He Bingshan Hu Hong Hu Wanjun Huang Yaoming Huang Zhilin Huang Tianxiang Ji Jinglei Jiang Tao Jiang 0021 Liang Jin Geoff Kent Faisal Khan 0001 Yuan-Fang Li Haodong Liu Yadong Liu 0001 Yongjing Liu Hongrun Lu Yadan Luo Lin Ma Fang Miao Yangyi Pu Chujun Qin Sinda Rebello Bin Tang Yujie Tang 0001 Feijie Wang Guangde Wang Hao Wang Wenjin Wang 0001 Yadong Wang 0001 Yu Wang 0027 Zhenyu Wu Yifei Xing 0001 Ying Xu Bin Yang Ling Yang 0006 Wenming Yang Xue Yang Nianmin Yao Hengyu Yin Yujie You F. Richard YuFei Richard Yu Hongjiang C. Yu Le Zhang 0004 WenJia Zhang Bing Zheng Xiangxin Zhou