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<r><article key="journals/jcisd/Galvez-Llompart21" mdate="2025-03-03">
<author orcid="0000-0002-0718-4143" pid="99/9085">Mar&#237;a G&#225;lvez-Llompart</author>
<author orcid="0000-0002-8343-647X" pid="281/9037">Riccardo Ocello</author>
<author pid="301/1923">Laura Rullo</author>
<author orcid="0000-0002-3019-3857" pid="301/1615">Serena Stamatakos</author>
<author orcid="0000-0003-0288-3719" pid="301/1779">Irene Alessandrini</author>
<author orcid="0000-0002-3388-3730" pid="292/2394">Riccardo Zanni</author>
<author orcid="0000-0002-6995-1838" pid="13/377">I&#241;aki Tu&#241;&#243;n</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author pid="301/2760">Sanzio Candeletti</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0002-3610-2928" pid="301/2484">Patrizia Romualdi</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>Targeting the JAK/STAT Pathway: A Combined Ligand- and Target-Based Approach.</title>
<pages>3091-3108</pages>
<year>2021</year>
<volume>61</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>6</number>
<ee type="oa">https://doi.org/10.1021/acs.jcim.0c01468</ee>
<url>db/journals/jcisd/jcisd61.html#Galvez-Llompart21</url>
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<r><article key="journals/jcisd/EvensethOGMRSC20" mdate="2026-02-25">
<author orcid="0000-0001-8004-6671" pid="281/9330">Linn S. M. Evenseth</author>
<author orcid="0000-0002-8343-647X" pid="281/9037">Riccardo Ocello</author>
<author orcid="0000-0003-3898-1193" pid="144/6108">Mari Gabrielsen</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author pid="63/1543">Ingebrigt Sylte</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>Exploring Conformational Dynamics of the Extracellular Venus flytrap Domain of the GABAB Receptor: A Path-Metadynamics Study.</title>
<pages>2294-2303</pages>
<year>2020</year>
<volume>60</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>4</number>
<ee>https://doi.org/10.1021/acs.jcim.0c00163</ee>
<ee>https://www.wikidata.org/entity/Q90791168</ee>
<url>db/journals/jcisd/jcisd60.html#EvensethOGMRSC20</url>
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<r><article key="journals/jcisd/OcelloFLRDM20" mdate="2025-03-03">
<author orcid="0000-0002-8343-647X" pid="281/9037">Riccardo Ocello</author>
<author orcid="0000-0002-1099-8279" pid="50/8764">Simone Furini</author>
<author orcid="0000-0001-6908-5469" pid="284/2338">Francesca Lugli</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0001-7115-4232" pid="95/11312">Carmen Domene</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<title>Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields.</title>
<pages>6532-6543</pages>
<year>2020</year>
<volume>60</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>12</number>
<ee type="oa">https://doi.org/10.1021/acs.jcim.0c01179</ee>
<ee>https://www.wikidata.org/entity/Q104137243</ee>
<url>db/journals/jcisd/jcisd60.html#OcelloFLRDM20</url>
</article>
</r>
<r><article key="journals/jcisd/SchuetzBBMERMEC19" mdate="2024-10-06">
<author orcid="0000-0001-8615-9554" pid="281/5060">Doris A. Schuetz</author>
<author orcid="0000-0002-4373-9310" pid="202/8225">Mattia Bernetti</author>
<author pid="281/4287">Martina Bertazzo</author>
<author pid="281/4911">Djordje Musil</author>
<author orcid="0000-0003-2202-5826" pid="281/4840">Hans-Michael Eggenweiler</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0003-4209-6883" pid="58/1536">Gerhard F. Ecker</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics.</title>
<pages>535-549</pages>
<year>2019</year>
<volume>59</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>1</number>
<ee>https://doi.org/10.1021/acs.jcim.8b00614</ee>
<ee>https://www.wikidata.org/entity/Q63349842</ee>
<url>db/journals/jcisd/jcisd59.html#SchuetzBBMERMEC19</url>
</article>
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<r><article key="journals/jcisd/BertazzoBRMC18" mdate="2023-09-30">
<author pid="281/4287">Martina Bertazzo</author>
<author orcid="0000-0002-4373-9310" pid="202/8225">Mattia Bernetti</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>Fully Flexible Docking via Reaction-Coordinate-Independent Molecular Dynamics Simulations.</title>
<pages>490-500</pages>
<year>2018</year>
<volume>58</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>2</number>
<ee>https://doi.org/10.1021/acs.jcim.7b00674</ee>
<ee>https://www.wikidata.org/entity/Q49603397</ee>
<url>db/journals/jcisd/jcisd58.html#BertazzoBRMC18</url>
</article>
</r>
<r><article key="journals/jcisd/BernettiRMMPRC18" mdate="2023-09-30">
<author orcid="0000-0002-4373-9310" pid="202/8225">Mattia Bernetti</author>
<author orcid="0000-0001-8384-7992" pid="170/8823">Elena Rosini</author>
<author orcid="0000-0001-5403-9507" pid="170/8748">Luca Mollica</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0003-1733-7243" pid="170/8941">Loredano Pollegioni</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors.</title>
<pages>2255-2265</pages>
<year>2018</year>
<volume>58</volume>
<journal>J. Chem. Inf. Model.</journal>
<number>11</number>
<ee>https://doi.org/10.1021/acs.jcim.8b00518</ee>
<ee>https://www.wikidata.org/entity/Q58610767</ee>
<url>db/journals/jcisd/jcisd58.html#BernettiRMMPRC18</url>
</article>
</r>
<r><article key="journals/jcc/MasettiMBFCCR17" mdate="2025-03-03">
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0003-0200-1712" pid="141/1637">Francesco Musiani</author>
<author orcid="0000-0002-4373-9310" pid="202/8225">Mattia Bernetti</author>
<author orcid="0000-0001-7385-649X" pid="141/3604">Federico Falchi</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0001-9557-926X" pid="141/1838">Stefano Ciurli</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data.</title>
<pages>1834-1843</pages>
<year>2017</year>
<volume>38</volume>
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<url>db/journals/jcc/jcc38.html#MasettiMBFCCR17</url>
</article>
</r>
<r><article key="journals/jcisd/MartinoMCCR13" mdate="2022-10-02">
<author pid="141/3695">Giovanni Paolo Di Martino</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author pid="141/3610">Luisa Ceccarini</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>An Automated Docking Protocol for hERG Channel Blockers.</title>
<pages>159-175</pages>
<year>2013</year>
<volume>53</volume>
<journal>J. Chem. Inf. Model.</journal>
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<ee>https://doi.org/10.1021/ci300326d</ee>
<ee>https://www.wikidata.org/entity/Q51842280</ee>
<url>db/journals/jcisd/jcisd53.html#MartinoMCCR13</url>
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<r><article key="journals/jcisd/BuonfiglioFFCMR13" mdate="2022-10-02">
<author pid="141/3451">Rosa Buonfiglio</author>
<author pid="141/3249">Mariarosaria Ferraro</author>
<author orcid="0000-0001-7385-649X" pid="141/3604">Federico Falchi</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>Collecting and Assessing Human Lactate Dehydrogenase-A Conformations for Structure-Based Virtual Screening.</title>
<pages>2792-2797</pages>
<year>2013</year>
<volume>53</volume>
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<ee>https://doi.org/10.1021/ci400543y</ee>
<ee>https://www.wikidata.org/entity/Q56976736</ee>
<url>db/journals/jcisd/jcisd53.html#BuonfiglioFFCMR13</url>
</article>
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<r><article key="journals/jcamd/NegriRH11" mdate="2021-10-14">
<author pid="58/10356">Matthias Negri</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author pid="49/2180">Rolf W. Hartmann</author>
<title>Computational investigation of the binding mode of bis(hydroxylphenyl)arenes in 17&#946;-HSD1: molecular dynamics simulations, MM-PBSA free energy calculations, and molecular electrostatic potential maps.</title>
<pages>795-811</pages>
<year>2011</year>
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<ee>https://www.wikidata.org/entity/Q84711500</ee>
<url>db/journals/jcamd/jcamd25.html#NegriRH11</url>
</article>
</r>
<r><article key="journals/jcc/MasettiCR08" mdate="2022-10-02">
<author orcid="0000-0002-3757-7802" pid="92/3511">Matteo Masetti</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>Modeling the hERG potassium channel in a phospholipid bilayer: Molecular dynamics and drug docking studies.</title>
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<year>2008</year>
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<url>db/journals/jcc/jcc29.html#MasettiCR08</url>
</article>
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<r><article key="journals/jcc/GraziosoCARM08" mdate="2022-10-02">
<author orcid="0000-0002-3261-9356" pid="51/2183">Giovanni Grazioso</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0002-0236-0662" pid="64/4937">Marco De Amici</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0003-3549-4365" pid="15/6478">Carlo De Micheli</author>
<title>Alpha7 nicotinic acetylcholine receptor agonists: Prediction of their binding affinity through a molecular mechanics Poisson-Boltzmann surface area approach.</title>
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<url>db/journals/jcc/jcc29.html#GraziosoCARM08</url>
</article>
</r>
<r><article key="journals/jcisd/ColizziRC08" mdate="2022-10-02">
<author orcid="0000-0001-5601-1452" pid="140/9886">Francesco Colizzi</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>Mechanical Features of <i>Plasmodium falciparum</i> Acyl Carrier Protein in the Delivery of Substrates.</title>
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<url>db/journals/jcisd/jcisd48.html#ColizziRC08</url>
</article>
</r>
<r><article key="journals/jcisd/BottegoniCR06" mdate="2022-10-02">
<author orcid="0000-0003-1251-583X" pid="14/2347">Giovanni Bottegoni</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>A Comparative Study on the Application of Hierarchical-Agglomerative Clustering Approaches to Organize Outputs of Reiterated Docking Runs.</title>
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<url>db/journals/jcisd/jcisd46.html#BottegoniCR06</url>
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<r><inproceedings key="conf/ismb/BottegoniRRC06" mdate="2022-10-02">
<author orcid="0000-0003-1251-583X" pid="14/2347">Giovanni Bottegoni</author>
<author orcid="0000-0003-2480-7151" pid="85/5611">Walter Rocchia</author>
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<author orcid="0000-0002-6370-1176" pid="23/4501">Andrea Cavalli</author>
<title>AClAP, Autonomous hierarchical agglomerative Cluster Analysis based protocol to partition conformational datasets.</title>
<pages>58-65</pages>
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<crossref>conf/ismb/2006</crossref>
<booktitle>ISMB (Supplement of Bioinformatics)</booktitle>
<ee>https://doi.org/10.1093/bioinformatics/btl212</ee>
<ee>https://www.wikidata.org/entity/Q48437357</ee>
<url>db/conf/ismb/ismb2006.html#BottegoniRRC06</url>
</inproceedings>
</r>
<r><article key="journals/jcamd/Recanatini96" mdate="2021-10-14">
<author orcid="0000-0002-0039-0518" pid="53/5840">Maurizio Recanatini</author>
<title>Comparative molecular field analysis of non-steroidal aromatase inhibitors related to fadrozole.</title>
<pages>74-82</pages>
<year>1996</year>
<volume>10</volume>
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<url>db/journals/jcamd/jcamd10.html#Recanatini96</url>
<ee>https://doi.org/10.1007/BF00124467</ee>
<ee>https://www.wikidata.org/entity/Q71483792</ee>
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<co c="0"><na f="b/Bernetti:Mattia" pid="202/8225">Mattia Bernetti</na></co>
<co c="0"><na f="b/Bertazzo:Martina" pid="281/4287">Martina Bertazzo</na></co>
<co c="0"><na f="b/Bottegoni:Giovanni" pid="14/2347">Giovanni Bottegoni</na></co>
<co c="0"><na f="b/Buonfiglio:Rosa" pid="141/3451">Rosa Buonfiglio</na></co>
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<co c="0"><na f="e/Eggenweiler:Hans=Michael" pid="281/4840">Hans-Michael Eggenweiler</na></co>
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<co c="0"><na f="f/Falchi:Federico" pid="141/3604">Federico Falchi</na></co>
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<co c="0"><na f="g/G=aacute=lvez=Llompart:Mar=iacute=a" pid="99/9085">Mar&#237;a G&#225;lvez-Llompart</na></co>
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<co c="0"><na f="p/Pollegioni:Loredano" pid="170/8941">Loredano Pollegioni</na></co>
<co c="0"><na f="r/Rocchia:Walter" pid="85/5611">Walter Rocchia</na></co>
<co c="0"><na f="r/Romualdi:Patrizia" pid="301/2484">Patrizia Romualdi</na></co>
<co c="0"><na f="r/Rosini:Elena" pid="170/8823">Elena Rosini</na></co>
<co c="0"><na f="r/Rullo:Laura" pid="301/1923">Laura Rullo</na></co>
<co c="0"><na f="s/Schuetz:Doris_A=" pid="281/5060">Doris A. Schuetz</na></co>
<co c="0"><na f="s/Stamatakos:Serena" pid="301/1615">Serena Stamatakos</na></co>
<co c="0"><na f="s/Sylte:Ingebrigt" pid="63/1543">Ingebrigt Sylte</na></co>
<co c="0"><na f="t/Tu=ntilde==oacute=n:I=ntilde=aki" pid="13/377">I&#241;aki Tu&#241;&#243;n</na></co>
<co c="0"><na f="z/Zanni:Riccardo" pid="292/2394">Riccardo Zanni</na></co>
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