CHARMM-GUI Bicelle Builder: An Extension of Membrane Builder for Modeling and Simulation of Bicelle Systems.

D. Peter Tieleman

Seonghan Kim Nathan R. Kern Lauren Paolucci Alan Jaemin Jo Christopher P. Baryiames D. Peter Tieleman Linda Columbus Wonpil Im CHARMM-GUI Bicelle Builder: An Extension of Membrane Builder for Modeling and Simulation of Bicelle Systems. 7081-7088 2025 65 J. Chem. Inf. Model. 13 https://doi.org/10.1021/acs.jcim.5c00841 db/journals/jcisd/jcisd65.html#KimKPJBTCI25 streams/journals/jcisd

Beibei Wang Changqing Zhong D. Peter Tieleman Supramolecular Organization of SARS-CoV and SARS-CoV-2 Virions Revealed by Coarse-Grained Models of Intact Virus Envelopes. 176-186 2022 62 J. Chem. Inf. Model. 1 https://doi.org/10.1021/acs.jcim.1c01240 db/journals/jcisd/jcisd62.html#WangZT22

Besmir Sejdiu D. Peter Tieleman ProLint: a web-based framework for the automated data analysis and visualization of lipid-protein interactions. 544-550 2021 49 Nucleic Acids Res. Webserver-Issue https://doi.org/10.1093/nar/gkab409 db/journals/nar/nar49.html#SejdiuT21

Nicolas Sapay D. Peter Tieleman Combination of the CHARMM27 force field with united-atom lipid force fields. 1400-1410 2011 32 J. Comput. Chem. 7 https://doi.org/10.1002/jcc.21726 https://www.wikidata.org/entity/Q83676992 db/journals/jcc/jcc32.html#SapayT11

Luca Monticelli Eric J. Sorin D. Peter Tieleman Vijay S. Pande Giorgio Colombo 0001 Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories. 1740-1752 2008 29 J. Comput. Chem. 11 https://doi.org/10.1002/jcc.20935 https://www.wikidata.org/entity/Q51966682 db/journals/jcc/jcc29.html#MonticelliSTPC08

Zhitao Xu Harry H. Luo D. Peter Tieleman Modifying the OPLS-AA force field to improve hydration free energies for several amino acid side chains using new atomic charges and an off-plane charge model for aromatic residues. 689-697 2007 28 J. Comput. Chem. 3 https://doi.org/10.1002/jcc.20560 https://www.wikidata.org/entity/Q79461109 db/journals/jcc/jcc28.html#XuLT07

Christian Kandt Eliud O. Oloo D. Peter Tieleman Domain coupling in the ABC transporter system BtuCD/BtuF: molecular dynamics simulation, normal mode analysis and protein-protein docking. 17 2007 conf/hpcs/2007 HPCS https://doi.org/10.1109/HPCS.2007.15 https://doi.ieeecomputersociety.org/10.1109/HPCS.2007.15 db/conf/hpcs/hpcs2007.html#KandtOT07

Justin L. MacCallum D. Peter Tieleman Calculation of the water-cyclohexane transfer free energies of neutral amino acid side-chain analogs using the OPLS all-atom force field. 1930-1935 2003 24 J. Comput. Chem. 15 https://doi.org/10.1002/jcc.10328 https://www.wikidata.org/entity/Q44600334 db/journals/jcc/jcc24.html#MacCallumT03

Christopher P. Baryiames Giorgio Colombo 0001 Linda Columbus Wonpil Im Alan Jaemin Jo Christian Kandt Nathan R. Kern Seonghan Kim Harry H. Luo Justin L. MacCallum Luca Monticelli Eliud O. Oloo Vijay S. Pande Lauren Paolucci Nicolas Sapay Besmir Sejdiu Eric J. Sorin Beibei Wang Zhitao Xu Changqing Zhong