Cardiac Microanatomy Imaging Using Forward-Viewing Optical Coherence Tomography Endoscope.

Jürgen Popp

David L. Vasquez Franziska Einmüller Ines Latka Kanchan Kulkarni Nestor Pallares-Lupon Marion Constantin James Marchant Virginie Loyer Stéphane Bloquet Dounia El Hamrani Jerome Naulin Wolfgang Drexler Jürgen Popp Angelika Unterhuber Marco Andreana Richard D. Walton Iwan W. Schie Cardiac Microanatomy Imaging Using Forward-Viewing Optical Coherence Tomography Endoscope. 2026 May 1852-1862 73 IEEE Trans. Biomed. Eng. 5 https://doi.org/10.1109/TBME.2025.3616493 db/journals/tbe/tbe73.html#VasquezELKPCMLBHNDPUAWS26 streams/journals/tbe

Adithya Ashok Chalain Valapil Carl Messerschmidt Maha Shadaydeh Michael Schmitt 0007 Jürgen Popp Joachim Denzler Deep Learning-Assisted Dynamic Mode Decomposition for Non-resonant Background Removal in CARS Spectroscopy. 41-56 2025 DAGM GCPR https://doi.org/10.1007/978-3-032-12840-9_4 conf/dagm/2025 db/conf/dagm/gcpr2025.html#ValapilMSSPD25 streams/conf/dagm

Rodrigo Escobar Díaz Guerrero Jamile Mohammad Jafari Tobias Meyer-Zedler Michael Schmitt Jürgen Popp Thomas Bocklitz LEO: An Open-Source Platform for Linking OMERO with Lab Notebooks and Heterogeneous Metadata Sources. 2025 August abs/2508.00654 CoRR https://doi.org/10.48550/arXiv.2508.00654 db/journals/corr/corr2508.html#abs-2508-00654 streams/journals/corr

Rodrigo Escobar Díaz Guerrero Lina Carvalho Thomas Bocklitz Jürgen Popp José Luís Oliveira A Data Augmentation Methodology to Reduce the Class Imbalance in Histopathology Images. 1767-1782 2024 37 J. Imaging Inform. Medicine 4 https://doi.org/10.1007/s10278-024-01018-9 db/journals/jdi/jdi37.html#GuerreroCBPO24 streams/journals/jdi

Rodrigo Escobar Díaz Guerrero José Luís Oliveira Jürgen Popp Thomas Bocklitz MMIR: an open-source software for the registration of multimodal histological images. 65 2024 December 24 BMC Medical Informatics Decis. Mak. 1 https://doi.org/10.1186/s12911-024-02424-3 db/journals/midm/midm24.html#GuerreroOPB24

Sepehr Razi Nicolae Tarcea Thomas Henkel Ramya Ravikumar Aikaterini Pistiki Annette Wagenhaus Sophie Girnus Martin Taubert Kirsten Küsel Petra Rösch Jürgen Popp Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria. 4503 2024 July 24 Sensors 14 https://doi.org/10.3390/s24144503 db/journals/sensors/sensors24.html#RaziTHRPWGTKRP24 streams/journals/sensors

Edoardo Farnesi Silvia Rinaldi Chen Liu Jonas Ballmaier Orlando Guntinas-Lichius Michael Schmitt 0007 Dana Cialla-May Jürgen Popp Label-Free SERS and MD Analysis of Biomarkers for Rapid Point-of-Care Sensors Detecting Head and Neck Cancer and Infections. 8915 2023 November 23 Sensors 21 https://doi.org/10.3390/s23218915 https://www.wikidata.org/entity/Q130582036 db/journals/sensors/sensors23.html#FarnesiRLBGSCP23

Izabella Jolan Jahn Alexej Grjasnow Henry John Karina Weber Jürgen Popp Walter Hauswald Noise Sources and Requirements for Confocal Raman Spectrometers in Biosensor Applications. 5067 2021 21 Sensors 15 https://doi.org/10.3390/s21155067 https://www.wikidata.org/entity/Q134376754 db/journals/sensors/sensors21.html#JahnGJWPH21

Pranita Pradhan Katharina Köhler Shuxia Guo Olga Rosin Jürgen Popp Axel Niendorf Thomas Bocklitz Data Fusion of Histological and Immunohistochemical Image Data for Breast Cancer Diagnostics using Transfer Learning. 495-506 2021 ICPRAM https://doi.org/10.5220/0010225504950506 conf/icpram/2021 db/conf/icpram/icpram2021.html#PradhanKGRPNB21

Nairveen Ali Johanna Kirchhoff Patrick Igoche Onoja Astrid Tannert Ute Neugebauer Jürgen Popp Thomas Bocklitz Predictive Modeling of Antibiotic Susceptibility in E. Coli Strains Using the U-Net Network and One-Class Classification. 167711-167720 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.3022829 https://www.wikidata.org/entity/Q123203721 db/journals/access/access8.html#AliKOTNPB20

Svetlana N. Agafilushkina Olga Zukovskaja Sergey A. Dyakov Karina Weber Vladimir Sivakov Jürgen Popp Dana Cialla-May Liubov A. Osminkina Raman Signal Enhancement Tunable by Gold-Covered Porous Silicon Films with Different Morphology. 5634 2020 20 Sensors 19 https://doi.org/10.3390/s20195634 https://www.wikidata.org/entity/Q100459913 db/journals/sensors/sensors20.html#AgafilushkinaZD20

Florian Korinth Elmar Schmälzlin Clara Stiebing Tanya Urrutia Genoveva Micheva Christer Sandin André Müller Martin Maiwald Bernd Sumpf Christoph Krafft Günther Tränkle Martin M. Roth Jürgen Popp Wide Field Spectral Imaging with Shifted Excitation Raman Difference Spectroscopy Using the Nod and Shuffle Technique. 6723 2020 20 Sensors 23 https://doi.org/10.3390/s20236723 https://www.wikidata.org/entity/Q103779491 db/journals/sensors/sensors20.html#KorinthSSUMSMMS20

Abdullah S. Mondol Milind D. Patel Jan Rüger Clara Stiebing Andreas Kleiber Thomas Henkel Jürgen Popp Iwan W. Schie Application of High-Throughput Screening Raman Spectroscopy (HTS-RS) for Label-Free Identification and Molecular Characterization of Pollen. 4428 2019 19 Sensors 20 https://doi.org/10.3390/s19204428 https://www.wikidata.org/entity/Q90723388 db/journals/sensors/sensors19.html#MondolPRSKHPS19

Pranita Pradhan Tobias Meyer Michael Vieth Andreas Stallmach Maximilian Waldner Michael Schmitt Jürgen Popp Thomas Bocklitz Semantic Segmentation of Non-linear Multimodal Images for Disease Grading of Inflammatory Bowel Disease: A SegNet-based Application. 396-405 2019 ICPRAM https://doi.org/10.5220/0007314003960405 conf/icpram/2019 db/conf/icpram/icpram2019.html#PradhanMVSWSPB19 David Campos 0001 Renato P. Pinho Ute Neugebauer Jürgen Popp José Luís Oliveira A Computational Pipeline for Sepsis Patients' Stratification and Diagnosis. 408-413 2018 HEALTHINF https://doi.org/10.5220/0006579104080413 conf/biostec/2018hi db/conf/biostec/healthinf2018.html#CamposPNPO18

Olga Zukovskaja Izabella Jolan Jahn Karina Weber Dana Cialla-May Jürgen Popp Detection of <i>Pseudomonas aeruginosa</i> Metabolite Pyocyanin in Water and Saliva by Employing the SERS Technique. 1704 2017 17 Sensors 8 https://doi.org/10.3390/s17081704 https://www.wikidata.org/entity/Q40113892 db/journals/sensors/sensors17.html#ZukovskajaJWCP17

Eliana Cordero Florian Korinth Clara Stiebing Christoph Krafft Iwan W. Schie Jürgen Popp Evaluation of Shifted Excitation Raman Difference Spectroscopy and Comparison to Computational Background Correction Methods Applied to Biochemical Raman Spectra. 1724 2017 17 Sensors 8 https://doi.org/10.3390/s17081724 https://www.wikidata.org/entity/Q41583343 db/journals/sensors/sensors17.html#CorderoKSKSP17

Oleg Ryabchykov Anuradha Ramoji Thomas Bocklitz Martin Foerster Stefan Hagel Claus Kroegel Michael Bauer Ute Neugebauer Jürgen Popp Leukocyte subtypes classification by means of image processing. 309-316 2016 FedCSIS https://doi.org/10.15439/2016F80 https://ieeexplore.ieee.org/xpl/freeabs_all.jsp?arnumber=7733258 conf/fedcsis/2016 db/conf/fedcsis/fedcsis2016.html#RyabchykovRBFHK16

Fisseha Bekele Legesse Anna Medyukhina Sandro Heuke Jürgen Popp Texture analysis and classification in coherent anti-Stokes Raman scattering (CARS) microscopy images for automated detection of skin cancer. 36-43 2015 43 Comput. Medical Imaging Graph. https://doi.org/10.1016/j.compmedimag.2015.02.010 https://www.wikidata.org/entity/Q42474577 db/journals/cmig/cmig43.html#LegesseMHP15

Ute Neugebauer Christian M. Kurz Thomas Bocklitz Tina Berger Thomas Velten Joachim H. Clement Christoph Krafft Jürgen Popp Raman-Spectroscopy Based Cell Identification on a Microhole Array Chip. 204-215 2014 5 Micromachines 2 https://doi.org/10.3390/mi5020204 https://www.wikidata.org/entity/Q56045650 db/journals/micromachines/micromachines5.html#NeugebauerKBBVCKP14

Elmar Schmälzlin Benito Moralejo Monika Rutowska Ana Monreal-Ibero Christer Sandin Nicolae Tarcea Jürgen Popp Martin M. Roth Raman Imaging with a Fiber-Coupled Multichannel Spectrograph. 21968-21980 2014 14 Sensors 11 https://doi.org/10.3390/s141121968 https://www.wikidata.org/entity/Q35446168 db/journals/sensors/sensors14.html#SchmalzlinMRMST14

Martin De Biasio Ged McGunnigle Raimund Leitner Jürgen Popp Petra Rösch D. Balthasar Identification of single bacteria using micro Raman spectroscopy. 34-39 2013 ICST https://doi.org/10.1109/ICSensT.2013.6727612 conf/icsenst/2013 db/conf/icsenst/icst2013.html#BiasioMLPRB13 Michael Kemmler Joachim Denzler Petra Rösch Jürgen Popp Classification of Microorganisms via Raman Spectroscopy Using Gaussian Processes. 81-90 2010 DAGM-Symposium https://doi.org/10.1007/978-3-642-15986-2_9 conf/dagm/2010 db/conf/dagm/dagm2010.html#KemmlerDRP10 Svetlana N. Agafilushkina Nairveen Ali Marco Andreana Jonas Ballmaier D. Balthasar Michael Bauer Tina Berger Martin De Biasio Stéphane Bloquet Thomas Bocklitz David Campos 0001 Lina Carvalho Dana Cialla-May Joachim H. Clement Marion Constantin Eliana Cordero Joachim Denzler Wolfgang Drexler Sergey A. Dyakov Franziska Einmüller Edoardo Farnesi Martin Foerster Sophie Girnus Alexej Grjasnow Rodrigo Escobar Díaz Guerrero Orlando Guntinas-Lichius Shuxia Guo Stefan Hagel Dounia El Hamrani Walter Hauswald Thomas Henkel Sandro Heuke Jamile Mohammad Jafari Izabella Jolan Jahn Henry John Michael Kemmler Johanna Kirchhoff Andreas Kleiber Katharina Köhler Florian Korinth Christoph Krafft Claus Kroegel Kanchan Kulkarni Christian M. Kurz Kirsten Küsel Ines Latka Fisseha Bekele Legesse Raimund Leitner Chen Liu Virginie Loyer Martin Maiwald James Marchant Ged McGunnigle Anna Medyukhina Carl Messerschmidt Tobias Meyer Tobias Meyer-Zedler Genoveva Micheva Abdullah S. Mondol Ana Monreal-Ibero Benito Moralejo André Müller Jerome Naulin Ute Neugebauer Axel Niendorf José Luís Oliveira Patrick Igoche Onoja Liubov A. Osminkina Nestor Pallares-Lupon Milind D. Patel Renato P. Pinho Aikaterini Pistiki Pranita Pradhan Anuradha Ramoji Ramya Ravikumar Sepehr Razi Silvia Rinaldi Petra Rösch Olga Rosin Martin M. Roth Jan Rüger Monika Rutowska Oleg Ryabchykov Christer Sandin Iwan W. Schie Elmar Schmälzlin Michael Schmitt Michael Schmitt 0007 Maha Shadaydeh Vladimir Sivakov Andreas Stallmach Clara Stiebing Bernd Sumpf Astrid Tannert Nicolae Tarcea Martin Taubert Günther Tränkle Angelika Unterhuber Tanya Urrutia Adithya Ashok Chalain Valapil David L. Vasquez Thomas Velten Michael Vieth Annette Wagenhaus Maximilian Waldner Richard D. Walton Karina Weber Olga Zukovskaja