What's Changed

• FIX do not show labels for invisible shapes by @mvdoc in #429
• MNT Deal with rgb vs rgba for different blender versions. by @cchen23 in #430
• FIX Check if overlays file exists before unlinking. by @cchen23 in #431
• FIX change location of filestore during the install by @TomDLT in #433
• REF Changed name of cortex.align.fs_manual to cortex.align.manual by @marklescroart in #434
• FIX ignore masked voxels when averaging with nanmean=True by @TomDLT in #436

Full Changelog: 1.2.3...1.2.4

FIX: GitHub actions pushing to pypi

Full Changelog: 1.2.3...1.2.3a

What's Changed

• FIX BrainData division overrides for Python 3 by @kroq-gar78 in #405
• FIX division by 0 in quickflat.utils.make_flatmap_image when nanmean=True by @mvdoc in #404
• ENH Long-overdue update to Blender 2.8+ by @marklescroart in #406
• ENH added config file specfication of domain name; blank by default by @marklescroart in #407
• FIX Tiny blender bug fix by @marklescroart in #410
• MNT Setup github actions by @mvdoc in #411
• MNT enable actions on PRs by @mvdoc in #412
• FIX add downloaded subjects to the cortex database by @TomDLT in #413
• FIX create intermediate dirs for config file by @mvdoc in #415
• FIX update sources before apt-get installing by @mvdoc in #418
• ENH add option for intermediate image in bbregister by @TomDLT in #417
• FIX keep current sampler when dataview changes by @TomDLT in #420
• Revert "FIX keep current sampler when dataview changes (#420)" by @mvdoc in #421
• FIX keep current sampler when dataview changes - v2 by @TomDLT in #422
• FIX set interpolation and layers only for volumes by @mvdoc in #423
• FIX ensure c-ordering for flatmap image by @mvdoc in #424
• ENH add blend_curvature method to Vertex, Vertex2D, and VertexRGB by @TomDLT in #425
• ENH,FIX add dropout option to make_svg, fix transparency by @mvdoc in #426

New Contributors

• @kroq-gar78 made their first contribution in #405

Full Changelog: 1.2.2...1.2.3

What's Changed

• FIX add more informative error in get_texture if inkscape is not installed by @mvdoc in #391
• NF Add Blue/Purple/Red/Orange/Green colormap by @mvdoc in #395
• ENH Enhancements to cortex.export by @mvdoc in #394
• DEP Use encodebytes instead of encodestring. by @cchen23 in #397
• FIX set default imshow interpolation to nearest for composite.add_data by @mvdoc in #402
• FIX: allow vertex data to be passed to cortex.segment.cut_surface(). … by @marklescroart in #399
• MNT Release version 1.2.2 by @mvdoc in #403

New Contributors

• @cchen23 made their first contribution in #397

Full Changelog: 1.2.1...1.2.2

Added

• Allow option to perform automatic alignment with Freesurfer's BBR for volumes without distortion correction (5d7d6ca)
• Add line_lanczos to available mappers (7721253)
• Use Freesurfer's BBR by default for automatic alignment (#384)

Fixed

• Parameter names for freesurfer.import_flat (4371b26))
• Fix left/right location of hemispheres for medial-pivot view (c3b029e)
• Animation functions in webgl.view (#372)
• Various fixes to 2D volumes
• Installation with numpy < 1.2 (#385)
• String encoding in openctm.pyx (6dc80db)

Added

• More functionality to import fMRIprep-processed data (#315)
• Function to rotate flatmaps (f88a)
• Option to ignore NaNs when averaging across the thickness of cortex (#355)
• New views for cortex.export.plot_panels and passing of additional kwargs (#361, #362)
• Specify colorbar location with default positionings for quickflat (#364)
• Pass custom colors for VolumeRGB (#366)

Fixed

• Bug with automatic creation of SVGs with ROIs (#340)
• Python 2/3 compatibilities for svgoverlay (#352)
• from_freesurfer/to_freesurfer handling of NIFTI images (#354)
• ROI label display parameters (#356)
• Improve documentation for install and demo (#359)
• Inkscape compatibility with newer versions (#365)
• Use correct contrast for automatic alignment with FreeSurfer's bbregister (39d8)

Fixed

• Installation fix for PyPi

Added

• Added function cortex.utils.download_subject to download new subjects for pycortex from web URLs. This function allows users to download FreeSurfer's fsaverage surface, with a flatmap and ROI labels made by Mark Lescroart (#344)
• Vertex objects have a new method .map() that allows mapping from one surface to another (#334)
• Add cortex.freesurfer.get_mri_surf2surf_matrix to create a sparse matrix implementing the mri_surf2surf command (#334 )
• Add function to plot and save 3D views and plot panels (#337 )
• Axis object can be passed to quickshow (#325)
• Help menu for the 3D WebGL viewer can be accessed with a shortcut (#319, #321)
• New keyboard shortcuts (list)
• Convenience function to import data preprocessed with fmriprep (#301 )
• Added option to use FreeSurfer's BBR for automatic alignment and function to use Freeview for manual alignment

Fixed

• Fix DataView2D to allow plotting of 2D datasets with quickflat
• Fix VertexRGB and VolumeRGB when alpha is not set
• Allow arbitrary positioning of the colorbar with quickflat
• Make quickflat more robust to extraneous polygons (#333)
• Fix mouse behavior when unfold > 0.5 in WebGL viewer (#330 )
• Sub surfaces fixes (#307)
• Firefox compatibility fixes (#306 )
• Miscellaneous python 3 fixes