fix issues with manual

Author: hhoeflin

Makefile

@@ -3,8 +3,8 @@ SHELL:=/bin/bash
 
 R_REVISION?=85786
 HDF5_VERSION?=System
-DOCKER_CRAN_CHECK_ARG=''
-# DOCKER_CRAN_CHECK_ARG='--as-cran'
+# DOCKER_CRAN_CHECK_ARG=''
+DOCKER_CRAN_CHECK_ARG='--as-cran'
 
 R := R --slave --vanilla -e
 Rscript := Rscript -e

NEWS.md

@@ -1,3 +1,6 @@
+# hdf5r 1.3.9
+- Fixed issues with string formatting
+
 # hdf5r 1.3.8
 - Fixed issue in configue.ac that lead to failing builds.
 

R/Common_functions.R

@@ -323,8 +323,7 @@ commonFG <- list(
         "\\url{https://portal.hdfgroup.org/display/HDF5/H5D_CREATE2} for regular groups and"
         "\\url{https://portal.hdfgroup.org/display/HDF5/H5D_CREATE_ANON} for anonymous groups for details."
         "@param name The name of the new dataset. If missing, an anonymous dataset is created"
-        "@param robj An R-object to take as a template for creating the dataset. Either \\code{robj} or both \\code{dtype} and {space}"
-        "have to be provided"
+        "@param robj An R-object to take as a template for creating the dataset. Either \\code{robj} or both \\code{dtype} and \\code{space} have to be provided"
         "@param dtype The datatype to use for the creation of the object. Can be null if \\code{robj} is given."
         "@param space The space to use for the object creation. Can be null if \\code{robj} is given. Otherwise an object of type \\code{H5S} which specifies the dimensions of the dataset."
         "@param dims Dimension of the new dataset; used if \\code{space} is \\code{NULL}. overwrite the dimension guessed from \\code{robj}"

R/R6Classes_H5P.R

@@ -17,13 +17,13 @@
 #############################################################################
 
 
-##' Create an \\code{\\link{H5P}} out of an id
+##' Create an \code{\link{H5P}} out of an id
 ##'
 ##' Function that determines the property list type of an id and creates
 ##' the appropriate class for it.
-##' @title Create an \\code{\\link{H5P}} out of an id
+##' @title Create an \code{\link{H5P}} out of an id
 ##' @param id The id to wrap inside an object
-##' @return An object of class \\code{\\link{H5P}}
+##' @return An object of class \code{\link{H5P}}
 ##' @author Holger Hoefling
 ##' @keywords internal
 H5P_factory <- function(id) {

R/high_level_UI.R

@@ -414,7 +414,7 @@ check_arg_for_hyperslab_func <- function(x, envir) {
 ##' @param post_read Should the reshuffle be computed for post-read (then \code{TRUE}) or pre-write (then \code{FALSE})
 ##' @return A list with 2 parts; Evaluated arguments, regularity report and reshuffle indicators. Will be returned as a list
 ##' with components \code{args_in}, \code{args_point}, \code{is_hyperslab}, \code{hyperslab},
-##' \code{needs_reshuffle}, code{reshuffle}, \code{result_dims_pre_shuffle}, \code{result_dims_post_shuffle}, \code{max_dims}
+##' \code{needs_reshuffle}, \code{reshuffle}, \code{result_dims_pre_shuffle}, \code{result_dims_post_shuffle}, \code{max_dims}
 ##' @author Holger Hoefling
 ##' @keywords internal
 args_regularity_evaluation <- function(args, ds_dims, envir, post_read=TRUE) {