CellWhisperer/launch.json at main · smsabidi/CellWhisperer · GitHub

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{
    "version": "0.2.0",
    "configurations": [
        {
            "type": "python",
            "request": "launch",
            "name": "Train immgen",
            "program": "${workspaceFolder}/src/cellwhisperer/jointemb/training.py",
            "condaEnv": "cellwhisperer",
            "args": [
                "fit",
                "--model.model_config.projection_dim",
                "128",
                "--model.model_config.locking_mode",
                "LU",
                "--model.model_config.transcriptome_model_type",
                "geneformer",
                "--data.nproc",
                "0",
                "--data.dataset_name",
                "immgen",
                "--log_level",
                "INFO",
                "--trainer.fast_dev_run",
                "true",
            ],
            "cwd": "${workspaceFolder}",
            "module": null,
            "justMyCode": true,
        },
        {
            "type": "python",
            "request": "launch",
            "name": "Run training fast_dev_run with default config",
            "program": "${workspaceFolder}/src/cellwhisperer/jointemb/training.py",
            "args": [
                "fit",
                "--trainer.fast_dev_run",
                "true",
                "--model.model_config.projection_dim",
                "128",
                "--model.model_config.locking_mode",
                "LU",
                "--model.model_config.transcriptome_model_type",
                "geneformer",
                "--data.nproc",
                "0"
            ],
            "cwd": "${workspaceFolder}",
            "module": null,
            "justMyCode": true,
        },
        {
            "type": "python",
            "request": "launch",
            "name": "Run training fit with run_config.yaml",
            "program": "${workspaceFolder}/src/cellwhisperer/jointemb/training.py",
            "args": [
                "fit",
                "--config",
                "${workspaceFolder}/run_config.yaml",
                "--data.nproc",
                "0"
            ],
            "cwd": "${workspaceFolder}",
            "module": null,
            "justMyCode": false,
        },
        {
            "name": "Remote DAP debugging (meduni)",
            "type": "python",
            "request": "attach",
            "connect": {
                "host": "s0-n02.hpc.meduniwien.ac.at",
                "port": 5679
            },
            "pathMappings": [
                {
                    "localRoot": "/home/moritz/Projects/cellwhisperer",
                    "remoteRoot": "/msc/home/mschae83/cellwhisperer_private"
                }
            ],
            "justMyCode": false
        },
        {
            "type": "python",
            "request": "launch",
            "name": "Debug sweeping",
            "program": "${workspaceFolder}/src/cellwhisperer/jointemb/sweeping.py",
            "args": [
                "--sweep_config",
                "${workspaceFolder}/src/experiments/sweeps/debug_sweep/sweep_config.yaml",
            ],
            "cwd": "${workspaceFolder}",
            "module": null,
            "justMyCode": false,
        },
    ]
}