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Added simple genome for testing. Fixed parsing of blank lines in config files. Adding tool for parsing IC in output of client.

rforder2 2013-10-01

changed /0.9.3-dev/src/Makefile
changed /0.9.3-dev/src/core/GeneticAlgorithm.cpp
changed /0.9.3-dev/src/core/Makefile
changed /0.9.3-dev/src/core/Simulation.cpp
changed /0.9.3-dev/src/estremo.cpp
changed /0.9.3-dev/src/example.conf
changed /0.9.3-dev/src/libestremo/Makefile
changed /0.9.3-dev/src/libestremo/libestremo.cpp
changed /0.9.3-dev/src/simple.fas
added /misc-tools
added /misc-tools/compute_ic.py
added /misc-tools/mkeqgenome.py
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/0.9.3-dev/src/libestremo/libestremo.cpp Diff Switch to side-by-side view
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/misc-tools
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/misc-tools/mkeqgenome.py Diff Switch to side-by-side view
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