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Hominid Cladogram Analysis Exercise

The document describes an exercise on phylogeny where the student analyzes five fossil animal skeletons to investigate their phylogenetic relationships. They construct a character matrix and cladogram showing character state transformations. The student determines that the first proposed cladogram requires fewer character state changes than the second, making it more parsimonious. They then construct character matrices and three alternative cladograms for four additional animals, identifying the most parsimonious tree.
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0% found this document useful (0 votes)
374 views4 pages

Hominid Cladogram Analysis Exercise

The document describes an exercise on phylogeny where the student analyzes five fossil animal skeletons to investigate their phylogenetic relationships. They construct a character matrix and cladogram showing character state transformations. The student determines that the first proposed cladogram requires fewer character state changes than the second, making it more parsimonious. They then construct character matrices and three alternative cladograms for four additional animals, identifying the most parsimonious tree.
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd

Exercise on Phylogeny

NAME: ASUNCION, KHATE CATHERINE B. DATE: APRIL 11, 2022

You have discovered the skeletons of five new fossil animals, and you would like to investigate their

phylogenetic relationships.

After being told that species "A" is very primitive, you decide to use it as the outgroup for a
phylogenetic analysis.

You construct the following character matrix:

7
6
5
4
3

2
1

1. Mark the character state transformations on the cladogram above.


2. Which character state is present in all five taxa? What is its implication to the tree?
The character state in which it is present in all five taxa is the Orbit. This indicates that the
character state is a common primitive character, often known as symplesiomorphy, which means that
these are useless for reconstructing evolutionary connections.

3. Which derived character states are found in only one terminal taxon? What is its
implication?
The derived character state which are only found in one terminal taxon is the Horn at tip of
snout and Bipedal, which also shows that the character is an autapomorphy, or a one-of-a-kind
derived character. Although autapomorphies can help us understand how an animal lived, they can't
tell us where it belongs in the cladogram.

4. Which derived character states are shared by more than one, but not all, terminal taxa?
Enumerate those characters. What is its implication?
The derived character states which shared by more than one, but not all terminal taxa are the
Forelimb and hindlimb with digits, Infratemporal fenestra, Antorbital fenestra, and
Mandibular fenestra. Its implication is that these character states are referred to as synapomorphies
(shared derived characteristics), and they are utilized to aid in the reconstruction of common ancestral
patterns.

5. How many character state changes are needed on this cladogram?


7-character state changes are needed on this cladogram.
Suppose someone proposes a different cladogram for these animals:

5
6 7 4
5 3
3
4
3

2
1

6. Map the character state changes onto this cladogram.

7. How many character state changes are needed on this cladogram?


11-character state changes are needed on this cladogram.

8. Which of the two cladograms is preferred?


I preferred the 1st cladogram, out of those two cladograms.

9. What was the basis for your decision? Explain.

My choice to use the first cladogram over the second cladogram was based on the fact that
the first cladogram contains the fewest character state changes. The simplest explanation that can
explain the data should be preferred, according to the principle of parsimony. The term "parsimony"
refers to the likelihood of a relationship assumption involving the fewest number of character changes.
As a result, the first cladogram was my personal favorite.

10. Now YOU do it. Four animals are shown below, along with a list of characters that might
help us understand their phylogenetic relationships. Indicate whether the indicated character
state is present or not. Show at least three (3) alternative trees and show the most
parsimonious tree. Animal A is the outgroup.

Complete the character matrix below:


Characters A B C D
1. Teeth missing
from front of YES YES YES YES
mouth
2. Bony frill along NO YES YES YES
back of skull
3. Large horn on NO NO YES YES
snout
4. Large horns NO NO NO YES
above eyes
5. Large hole on
surface of bony NO YES NO NO
frill
TREE NO. 1

B C D
A 4
5

TREE NO. 2
D B C
A
4 5 3
3

TREE NO. 3

D B
C
A 3 5
4
3

Common questions

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An outgroup serves as a reference point in phylogenetic analysis to root the tree and distinguish between derived and primitive character states. It is typically a species or group that is known to be more distantly related to the rest of the taxa being considered, helping to infer the direction of evolutionary change .

Understanding the presence or absence of character states is essential for constructing phylogenetic trees as it helps identify shared primitive traits (symplesiomorphies) and shared derived traits (synapomorphies), crucial for inferring evolutionary relationships and drawing the connections accurately on the phylogenetic tree .

Seven character state changes were necessary for the first cladogram proposed .

If a character state is present in all five taxa, it is considered a common primitive character or symplesiomorphy. This means the character is shared by all members and is not useful for reconstructing evolutionary connections because it does not indicate derived relationships .

A character state present in only one species, known as an autapomorphy, does not help to determine its placement on a cladogram in terms of evolutionary relationships. While it offers insights into the species' specific adaptations, it does not inform about shared evolutionary history or relationships with other taxa .

Synapomorphies are shared derived characteristics found in more than one, but not all, terminal taxa. They are significant because they help in reconstructing common evolutionary ancestries and relationships among taxa by indicating common branches on a phylogenetic tree .

Incorrect use of a character state matrix can lead to inaccurate phylogenetic trees, misidentification of relationships, and erroneous conclusions about evolutionary trajectories. This mistake can result in identifying incorrect synapomorphies and autapomorphies, thereby distorting our understanding of the evolutionary history of the organisms in question .

A phylogenetic tree with fewer character state changes is preferred due to the principle of parsimony, which favors the simplest explanation that accounts for all observations. It reduces the assumptions about evolution, minimizing the complexity of evolutionary paths and supporting the idea that evolution tends to follow the simplest course .

Autapomorphies are considered less useful in determining phylogenetic relationships because they are unique derived characters found only in a single terminal taxon. They do not provide information about the relationships between taxa as they do not indicate shared ancestry with other groups but can offer insights into the unique lifestyle or habitat of the organism .

Parsimony is applied by selecting the phylogenetic tree that involves the fewest number of character state changes. It assumes the simplest explanation for evolution, meaning fewer evolutionary steps are preferred. In the context provided, the first cladogram is preferred because it requires fewer character state changes compared to others, adhering to the parsimony principle .

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