Organic Reactions

Nucleophilic Acid and Base Nucleophilic

The Mechanism of
Attack By Catalyzed Attack By
Reduction Reactions
Water Hydration Alcohol
Bimolecular Unimolecular
Addition/Elimination
Free Radical Nucleophilic Nucleophilic
Reactions of Carboxylic
Reactions Substitution or Substitution or
Acid Derivatives
SN2 Reactions SN1 Reactions
Substitution
Versus Summary of
Elimination Reactions
Elimination Substitution/Elimination Reactions
Reactions

The Mechanism of Reduction Reactions

Two fundamentally different reducing agents have been used to add hydrogen
across a double bond. A metal can be used to catalyze the reaction between
hydrogen gas and the C=C double bond in an alkene.

A source of the hydride (H-) ion, on the other hand, is used to reduce C=O double
bonds.

The difference between these reactions is easy to understand. The first reaction
uses a nonpolar reagent to reduce a nonpolar double bond. The atoms on the
surface of a metal are different from those buried in the body of the solid because
they cannot satisfy their tendency to form strong metal-metal bonds. Some metals
can satisfy a portion of their combining power by binding hydrogen atoms and/or
alkenes to the surface.

Adding one of the hydrogen atoms to the alkene forms an alkyl group, which can
bond to the metal until the second hydrogen atom can be added to form the alkene.
Although the hydrogen atoms are transferred one at a time, this reaction is fast
enough that both of these atoms usually end up on the same side of the C=C double
bond. This can't be seen in most alkanes produced by this reaction because of the
free rotation around C C bonds. Reduction of a cycloalkene, however, gives a
stereoselective product.

Reduction of an alkyne with hydrogen on a metal catalyst gives the corresponding

alkane. By selectively "poisoning" the catalyst it is possible to reduce an alkyne to
an alkene. Once again, the reaction is stereoselective, adding both hydrogen atoms
from the same side of the C C bond to form the cis-alkene.

Because it is a polar reagent, LiAlH4 won't react with a C=C double bond. It acts as
a source of the H- ion, however, which is a strong Br�nsted base and a strong
nucleophile. The H- ion can therefore attack the + end of a polar C=O double bond.

The neutral AlH3 molecule formed when an AlH4- ion acts as a hydride donor is a
Lewis acid that coordinates to the negatively charged oxygen atom in the product
of this reaction. When, in a second step, a protic solvent is added to the reaction, an
alcohol is formed.
 Nucleophilic Attack By Water

In the 1930s and 1940s, Dashiell Hammett (1894-1961) created the genre of the
"hard-boiled" detective in books such as The Maltese Falcon and The Thin Man. A
common occurrence in this literature was a character who "slipped someone a
Mickey Finn" a dose of the sedative known as chloral hydrate dissolved in a
drink that contains alcohol.

Chloral hydrate

Chloral hydrate is a white solid formed by adding a molecule of water across the
C=O double bond in the corresponding aldehyde.

The equilibrium constant for this reaction is sensitive to the substituents on the
C=O double bond. Electron-withdrawing substituents, such as the Cl3C group in
chloral, drive the reaction toward the dialcohol, or diol (Ka >> 1). Electron-
donating substituents, such as the pair of CH3 groups in acetone, pull the
equilibrium back toward the aldehyde (Ka = 2 x 10-3).

The rate of this reaction can be studied by following the incorporation of

isotopically labeled water. The vast majority (99.76%) of water molecules
contain 16O, but some contain 17O (0.04%) or 18O (0.2%). When acetone is
dissolved in a sample of water that has been enriched in 18O, it gradually picks up
the 18O isotope.
The rate of this reaction is infinitesimally slow in a neutral solution (pH 7). But, in
the presence of a trace of acid (or base), the reaction occurs very rapidly.

Acid and Base Catalyzed Hydration

The role of the acid catalyst is easy to understand. Protonation of the oxygen atom
increases the polarity of the carbonyl bond.

This increases the rate at which a water molecule can act as a nucleophile toward
the positive end of the C=O double bond.

Acid-catalyzed hydration: Step 1

The product of this reaction then loses an H+ ion to form the diol.

Acid-catalyzed hydration: Step 2

The role of the base catalyst is equally easy to understand. The OH- ion is a much
stronger nucleophile than water; strong enough to attack the carbonyl by itself.

Base-catalyzed hydration: Step 1

The product of this reaction then picks up a proton from a water molecule to form
the diol and regenerate the OH- ion.

Base-catalyzed hydration: Step 2

There is a fundamental relationship between the mechanisms of the reactions at the

carbonyl group introduced so far. In each case, a nucleophile or Lewis base attacks
the positive end of the carbonyl group. And, in each case, the rate of reaction can
be increased by coordinating a Lewis acid or electrophile at the other end of the
carbonyl.

There is a subtle difference between these reactions, however. Very strong

nucleophiles, such as Grignard reagents or the hydride ion, add to the carbonyl in
an irreversible reaction.

Attack by a weaker nucleophile, such as water, is a reversible reaction that can

occur in either direction.
 Nucleophilic Attack by an Alcohol

What would happen if we dissolved an aldehyde or ketone in an alcohol, instead of

water? We would get a similar reaction, but now an ROH molecule is added across
the C=O double bond.

Once again, the reaction is relatively slow in the absence of an acid or base
catalyst. If we bubble HCl gas through the solution, or add a small quantity of
concentrated H2SO4, we get an acid-catalyzed reaction that occurs by a mechanism
analogous to that described in the previous section.

Acid-catalyzed reaction of an alcohol with a carbonyl

The product of this reaction is known as a hemiacetal (literally, "half of an

acetal"). If an anhydrous acid is added to a solution of the aldehyde in a large
excess of alcohol, the reaction continues to form an acetal.

Hemiacetals can be recognized by looking for a carbon atom that has both an
OH and an OR group.
 A hemiacetal

Acetals, on the other hand, contain a carbon atom that has two OR groups.

An acetal

Hemiacetals and acetals play an important role in the chemistry of carbohydrates.

Consider what would happen, for example, if the OH group on the fifth carbon
atom in a glucose molecule attacked the aldehyde at other end of this molecule.

The product of this reaction is a hemiacetal that contains a six-membered ring

known as a pyranose. Two isomers of glucopyranose can be formed, depending on
whether the OH group attacks from above or below the C=O group.

-D-Glucopyranose

or

-D-Glucopyranose

or
An analogous intramolecular reaction can occur within a fructose molecule.

In this case, a hemiacetal is formed that contains a five-membered furanose ring.

Once again, there are two isomers, depending on how the OH group attacks the
C=O group.

-D-Fructofuranose -D-Fructofuranose

Sugars, such as glucose and fructose, can be linked to form complex carbohydrates
by forming an acetal linkage between the OH group on one sugar and the
hemiacetal on the other. Sucrose, or cane sugar, for example, is an acetal formed
by linking -D-gluco-pyranose and -D-fructofuranose residues.

Sucrose

Addition/Elimination Reactions of Carboxylic Acid Derivatives

The following reaction can be used to illustrate the synthesis of an ester from a
carboxylic acid
These reactions occur very slowly in the absence of a strong acid. When gaseous
HCl is bubbled through the solution, or a small quantity of concentrated H2SO4 is
added, these reactions reach equilibrium within a few hours. Once again, the acid
protonates the oxygen of the C=O double bond, thereby increasing the polarity of
the carbonyl group, which makes it more susceptible to attack by a nucleophile.

As might be expected, the first step in this reaction involves attack by a

nucleophile at the positively charged end of the C=O double bond. A pair of
nonbonding electrons on the oxygen atom of the alcohol is donated to the carbon
atom of the carbonyl to form a C O bond. As this bond forms, the electrons in
the bond of the carbonyl are displaced onto the oxygen atom. A proton is then
transferred back to the solvent to give a tetrahedral addition intermediate.

Nucleophilic addition

One of the OH groups in this intermediate picks up a proton, loses a molecule of

water, and then transfers a proton back to the solvent to give the ester.

Nucleophilic elimination

The combination of addition and elimination reactions has the overall effect of
substituting one nucleophile for another in this case, substituting an alcohol for
water. The rate of these nucleophilic substitution reactions is determined by the
ease with which the elimination step occurs. As a rule, the best leaving groups in
nucleophilic substitutions reactions are weak bases. The most reactive of the
carboxylic acid derivatives are the acyl chlorides because the leaving group is a
chloride ion, which is a very weak base (Kb 10-20).

Esters are less reactive because the leaving group is an alcohol, which is a slightly
better base (Kb 10-14).

Amides are even less reactive because the leaving group is ammonia or an amine,
which are significantly more basic (Kb 10-5).

Free Radical Reactions

The starting point for reactions at a carbonyl involves attack by a nucleophile on

the carbon atom of the C=O double bond.

Or it involves the heterolytic splitting of a bond to form a nucleophile that can

attack the carbonyl group.
In either case, the reaction is carried by a reagent that donates a pair of electrons to
a carbon atom to form a new covalent bond.

Free-radical halogenation of an alkane occurs by a very different mechanism. The

first step in these reactions is the homolytic splitting of a bond to give a pair of
free radicals.

Chain initiation

A series of reactions then occurs that involves a chain-reaction. Consider the

chlorination of propane, for example. A Cl� atom can attack the CH3 group at one
end of the molecule.

Chain propagation

Or it can attack the CH2 group in the center of the molecule.

Chain propagation
The free radicals generated in these reactions then react with chlorine to form
either 1-chloro-propane or 2-chloropropane and regenerate a Cl� radical.

Chain propagation

There are six hydrogen atoms in the two CH3 groups and two hydrogens in the
CH2 group in propane. If attack occurred randomly, six-eighths (or three-quarters)
of the product of this reaction would be 1-chloropropane. The distribution of
products of this reaction, however, suggests that 1-chloropropane is formed
slightly less often than 2-chloropropane.

This can be explained by noting that the 2 radical formed by removing a hydrogen
atom from the CH2 group in the center of the molecule is slightly more stable than
the 1 radical produced when a hydrogen atom is removed from one of the
CH3 groups at either end of the molecule.

The difference between these radicals can be appreciated by considering the energy
it takes to break the C H bond in the following compounds.

H = -381 kJ/molrxn

H = -395 kJ/molrxn
 H = -410 kJ/molrxn

These data suggest that it takes less energy to break a C H bond as the number of
alkyl groups on the carbon atom that contains this bond increases. This can be
explained by assuming that the products of the bond-breaking reaction
become more stable as the number of alkyl groups increases. Or, in other words,
3� radicals are more stable than 2� radicals, which are more stable than 1�
radicals.

The activation energy for the chain-propagation steps in free-radical bromination

reactions is significantly larger than the activation energy for these steps during
chlorination. As a result, free-radical bromination reactions are more selective than
chlorination reactions. Bromination reactions are far more likely to give the
product predicted from the relative stability of the free-radical intermediate.
Bromination of 2-methylpropane, for example, gives almost exclusively 2-bromo-
2-methylpropane, not the statistically more likely 1-bromo-2-methylpropane.

Bimolecular Nucleophilic Substitution or SN2 Reactions

Most of our knowledge of the mechanisms of chemical reactions has come from
the study of the factors that influence the rate of these reactions. The type of
reaction that has been studied more than any other involves attack by a nucleophile
on a saturated carbon atom. Consider the following reaction, for example, which
converts an alkyl bromide into an alcohol.

In the course of this reaction, one nucleophile (the OH- ion) is substituted for
another (the Br- ion). This is therefore a nucleophilic substitution reaction.
The rate of this reaction is first-order in both CH3Br and the OH- ion, and second-
order overall.

Rate = k(CH3Br)(OH-)

In the 1930s, Sir Christopher Ingold proposed a mechanism for this reaction in
which both the alkyl halide and the hydroxyl ion are involved in the rate-limiting
or slowest step of the reaction. The OH- ion attacks the "backside" of the CH3Br
molecule. (It attacks the carbon atom at a point directly opposite to the Br
substituent or leaving group.) When this happens, a pair of nonbonding electrons
on the OH- ion are used to form a covalent bond to the carbon atom at the same
time that the carbon-bromine is broken, as shown in the figure below.

Because the rate-limiting step in this reaction involves both the CH3Br and
OH- molecules, it is called a bimolecular nucleophilic substitution, or SN2,
reaction.

The most important point to remember about the mechanism of SN2 reactions is
that they occur in a single step. The species in the middle of Figure O3.2 is known
as a transition state. If you envision this reaction as an endless series of snapshots
that capture the infinitesimally small changes which occur as one bond forms and
the other bond breaks, the transition state is the snapshot in this series that has the
highest energy and is therefore the least stable. The transition state has an
infinitesimally short lifetime, on the order of 10-12 seconds.

In the course of an SN2 reaction, the other three substituents on the carbon atom are
"flipped" from one side of the atom to the other. This inevitably leads to inversion
of the configuration at a stereocenter. Consider the following reaction, for example,
in which cis-1-bromo-3-methylcyclopentane is converted into trans-3-
methylcyclopentanol.

Or the reaction in which the 2-butanol. R isomer of 2-bromobutane is transformed

into the S isomer of
 Unimolecular Nucleophilic Substitution or SN1 Reactions

The kinetics of nucleophilic substitution reactions have been studied in greater

detail than any other type of reaction because they don't always proceed through
the same mechanism. Consider the reaction between the OH- ion and t-butyl
bromide, for example.

The rate of this reaction depends only on the concentration of the alkyl bromide.
(Adding more OH- ion to the solution has no effect on the rate of reaction.)

Rate = k((CH3)3CBr)

Ingold and coworkers argued that this rate law is consistent with a mechanism in
which the rate-limiting or slowest step involves the breaking of the carbon-bromine
bond to form a pair of ions. As one might expect, the pair of electrons in the C
Br bond end up on the more electronegative bromine atom.

Rate-limiting step:

Because the bromine atom has formally gained an electron from the carbon atom, it
is now a negatively charged Br- ion. Because the carbon atom has formally lost an
electron, it is now a "carbocation."

The first step in this mechanism is a relatively slow reaction. (The activation
energy for this step is roughly 80 kJ/mol.) If this reaction is done in water, the next
step is extremely fast. The (CH3)3C+ ion is a Lewis acid because it has an empty
orbital that can be used to accept a pair of electrons. Water, on the other hand, is a
reasonably good Lewis base. A Lewis acid-base reaction therefore rapidly occurs
in which a pair of nonbonding electrons on a water molecule are donated to the
carbocation to form a covalent C O bond.
The product of this reaction is a stronger acid than water. As a result, it transfers a
proton to water.

Because the slowest step of this reaction only involves t-butyl bromide, the overall
rate of reaction only depends on the concentration of this species. This is therefore
a unimolecular nucleophilic substitution, or SN1, reaction.

The central carbon atom in the t-butyl carbocation formed in the first step of this
reaction is planar, as shown in the figure below.

This means that water can attack this carbocation in the second step with equal
probability from either side of the carbon atom. This has no effect on the products
of this reaction, because the starting material is not optically active. But what
would happen if we started with an optically active halide, such as 2-bromobutane?

Regardless of whether we start with the R or S isomer, we get the same

intermediate when the C Br bond breaks.

The intermediate formed in the first step in the SN1 mechanism is therefore achiral.

Mixtures of equal quantities of the +/- or R/S stereoisomers of a compound are said
to be racemic. This term traces back to the Latin racemus, which means "a cluster
of grapes." Just as there is an equal probability of finding grapes on either side of
the stem in a cluster of grapes, there is an equal probability of finding
the Rand S enantiomers in a racemic mixture. SN1 reactions are therefore said
to proceed with racemization. If we start with a pure sample of (R)-2-
bromobutane, for example, we expect the product of the SN1 reaction with the
OH- ion to be a racemic mixture of the two enantiomers of 2-butanol.

We are now ready to address a pair of important questions. First, why does CH3Br
react with the OH- ion by the SN2 mechanism if (CH3)3CBr does not? The SN2
mechanism requires direct attack by the OH- ion on the carbon atom that carries the
C Br bond. It is much easier for the OH- ion to get past the small hydrogen atoms
in CH3Br than it is for this ion to get past the bulkier CH3 groups in (CH3)3CBr.

Thus, SN2 reactions at the 1� carbon atom in CH3Br are much faster than the
analogous reaction at the 3� carbon atom in (CH3)3CBr.

Why, then, does (CH3)3CBr react with the OH- ion by the SN1 mechanism if CH3Br
does not? The SN1 reaction proceeds through a carbocation intermediate, and the
stability of these ions decreases in the following order.

Organic chemists explain this by noting that alkyl groups are slightly "electron
releasing."

They can donate electron density to a neighboring group. This tends to delocalize
the charge over a larger volume of the molecule, which stabilizes the carbocation.

When we encountered a similar phenomenon in the chemistry of free radicals we

noted that 3� radicals are roughly 30 kJ/mol more stable than 1 radicals. In this
case, the difference is much larger. A 3� carbocation is 340 kJ/mol more stable
than a 1� carbocation! As a result, it is much easier for (CH3)3CBr to form a
carbocation intermediate than it is for CH3Br to undergo a similar reaction.

In theory, both starting materials could undergo both reaction mechanisms. But the
rate of SN2 reactions for CH3Br are much faster than the corresponding SN1
reactions, whereas the rate of SN1 reactions for (CH3)3CBr are very much faster
than SN2 reactions.
 Elimination Reactions

Why do we need to worry about whether a nucleophilic substitution reaction

occurs by an SN1 or SN2 mechanism? At first glance, it would appear that the same
product is obtained regardless of the mechanism of the reaction. Consider the
following substitution reaction, for example.

The only apparent difference between the two mechanisms is the stereochemistry
of the product. If the reaction proceeds through an SN2 mechanism, it gives
inversion of configuration conversion of an R starting material into
an S product, or vice versa. If the reaction proceeds through a carbocation
intermediate via an SN1 mechanism, we get a racemic mixture.

The importance of understanding the mechanism of nucleophilic substitution

reactions can best be appreciated by studying the distribution of products of the
example given above. When 2-bromopropane is allowed to react with the
methoxide ion in methanol, less than half of the starting material is converted into
methyl isopropyl ether; the rest is transformed into 2-propene.

The reaction that produces the alkene involves the loss of an HBr molecule to form
a C=C double bond. It is therefore an example of an elimination reaction.

Starting materials that are likely to undergo an bimolecular SN2 reaction undergo
elimination reactions by a bimolecular E2 mechanism. This is a one-step reaction
in which the nucleophile attacks a C H bond on the carbon atom adjacent to the
site of SN2 reaction.

Starting materials that are likely to undergo a unimolecular SN1 reaction undergo
elimination reactions by a unimolecular E1 mechanism. As might be expected,
the rate-limiting step is the formation of the carbocation.
Rate-limiting Step:

The solvent then acts as a base, removing an H+ ion from one of the alkyl groups
adjacent to the carbocation. The electrons in the C H bond that is broken are
donated to the empty orbital on the carbocation to form a double bond.

Substitution Versus Elimination Reactions

There are three ways of pushing the reaction between an alkyl halide and a
nucleophile toward elimination instead of substitution.

 Start with a highly substituted substrate, which is more likely to undergo

elimination. Only 10% of a primary alkyl bromide undergoes elimination to
form an alkene, for example, when it reacts with an alkoxide ion dissolved
in alcohol. The vast majority of the starting material goes on to form the
product expected for an SN2 reaction.

More than half of a secondary alkyl bromide undergoes elimination under the same
conditions, as we have already seen.

When the starting material is a tertiary alkyl halide, more than 90% of the product
is formed by an E1 elimination reaction.
  Use a very strong base as the nucleophile. When we use a relatively weak
base, such as ethyl alcohol, only about 20% of t-butyl bromide undergoes
elimination.

In the presence of the ethoxide ion, which is a much stronger base, the product of
the reaction is predominantly the alkene.

 Increase the temperature at which the reaction is run. Because both E1 and
E2 reactions lead to an increase in the number of particles in the system, they
are associated with a positive entropy term. Thus, increasing the temperature
of the reaction makes the overall free energy of reaction more negative, and
the reaction more favorable.

Summary of Substitution/Elimination Reactions

 Methyl halides and primary alkyl halides such as CH3CH2Br undergo

nucleophilic substitution reactions.

 Secondary alkyl halides undergo SN2 reactions when handled gently at

low temperatures and with moderate strength nucleophiles.
  At high temperatures, or in the presence of a strong base, secondary halides
undergo E2 elimination reactions.

Tertiary halides undergo a combination of SN1 and E1 reactions. If the reaction is

kept cool, and the nucleophile is a relatively weak base, it is possible to get
nucleophilic substitution. At high temperatures, or with strong bases, elimination
reactions predominate.