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Identifying Overfitting in Machine Learning Models Using Scikit-Learn

Last Updated : 21 Apr, 2025
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Overfitting is a critical issue in machine learning that can significantly impact the performance of models when applied to new, unseen data. Identifying overfitting in machine learning models is crucial to ensuring their performance generalizes well to unseen data. In this article, we'll explore how to identify overfitting in machine learning models using scikit-learn, a popular machine learning library in Python.

Understanding Overfitting

Overfitting is a common problem in machine learning where a model learns the training data too well, capturing noise or random fluctuations that are not present in the underlying true relationship between the features and the target variable.

This results in a model that performs well on the training data but generalizes poorly to new, unseen data. This phenomenon is often exacerbated by:

  • Model Complexity: Models with too many parameters relative to the size of the training data are prone to overfitting. These models can capture noise in the data rather than the underlying patterns.
  • Insufficient Training Data: If the training dataset is too small, the model may not have enough information to learn the underlying patterns, leading to overfitting.
  • High Dimensionality: When dealing with high-dimensional data, such as text or images, it's easy for models to overfit if not properly regularized or if feature selection/reduction techniques are not applied.
  • Noise in the Data: If the training data contains a significant amount of noise or irrelevant features, the model may learn to fit the noise rather than the underlying signal.

Techniques for Identifying Overfitting in Scikit-Learn

Identifying overfitting in machine learning models, including those built using Scikit-Learn, is essential to ensure the model generalizes well to unseen data. Several methods can be employed to identify overfitting in Scikit-learn models:

1. Holdout Validation

Holdout validation involves splitting the dataset into training and testing sets. The model is trained on the training set and evaluated on the testing set. A significant performance gap between these sets suggests overfitting.

If the model performs significantly better on the training set than on the testing set, it suggests that the model has memorized the training data rather than learning to generalize. This discrepancy indicates overfitting, as the model struggles to make accurate predictions on new, unseen data.

2. Cross-Validation

Cross-validation, particularly k-fold cross-validation, is a robust method to detect overfitting. It involves dividing the data into k subsets and training the model k times, each time using a different subset as the validation set. This helps in assessing the model's generalization ability.

If the model consistently performs well on the training folds but poorly on the validation folds, it indicates overfitting. Cross-validation reduces the chances of overfitting by ensuring that every data point has a chance to be in the validation set, making it harder for the model to memorize specific data points.

3. Learning Curves

Learning curves plot the training and validation error as a function of the training set size. In an overfitting scenario:

  • If the training error is much lower than the validation error, it suggests overfitting.
  • As the training set size increases, the training and validation errors should converge if the model is not overfitting.

This allows you to observe how the model's ability to generalize improves with more data.

Example: Identifying Overfitting with Polynomial Regression

In polynomial regression, we can identify overfitting by observing the behavior of the mean squared error (MSE) on the testing set as the polynomial degree increases:

  • Decrease in Training Error: As the polynomial degree increases, the model complexity increases, and it becomes more capable of fitting the training data. Consequently, the training error tends to decrease because the model fits the training data more closely.
  • Initial Decrease in Testing Error: Initially, with the increase in polynomial degree, the testing error may decrease. This is because the model captures more complexity from the data, resulting in a better fit to the testing data as well.
  • Subsequent Increase in Testing Error: After reaching a certain degree of polynomial features, the testing error may start to increase. This increase indicates that the model is becoming too complex and is starting to fit the noise in the training data rather than capturing the underlying pattern. This phenomenon is known as overfitting.

The code plot below:

  • Shows relationship between polynomial degree and mean squared error.
  • Train error (blue line) and test error (orange line) plotted against polynomial degree.
  • Interpretation: Underfitting (low degree), optimal complexity (moderate degree), overfitting (high degree).
Python
import numpy as np
import matplotlib.pyplot as plt
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import PolynomialFeatures
from sklearn.linear_model import LinearRegression
from sklearn.metrics import mean_squared_error

# Generate synthetic data
np.random.seed(0)
x = np.linspace(0, 10, 100)
y = np.sin(x) + np.random.normal(scale=0.2, size=x.shape)

# Split data into training and testing sets
x_train, x_test, y_train, y_test = train_test_split(x, y, test_size=0.3, random_state=0)

# Fit polynomial regression models of different degrees
degrees = [1, 3, 10, 20]
train_errors = []
test_errors = []

for degree in degrees:
    poly_features = PolynomialFeatures(degree=degree)
    x_poly_train = poly_features.fit_transform(x_train[:, np.newaxis])
    x_poly_test = poly_features.transform(x_test[:, np.newaxis])
    
    model = LinearRegression()
    model.fit(x_poly_train, y_train)
    
    train_predictions = model.predict(x_poly_train)
    test_predictions = model.predict(x_poly_test)
    
    train_errors.append(mean_squared_error(y_train, train_predictions))
    test_errors.append(mean_squared_error(y_test, test_predictions))

# Plot learning curves
plt.figure(figsize=(10, 6))
plt.plot(degrees, train_errors, label='Train Error', marker='o')
plt.plot(degrees, test_errors, label='Test Error', marker='o')
plt.title('Learning Curves')
plt.xlabel('Polynomial Degree')
plt.ylabel('Mean Squared Error')
plt.xticks(degrees)
plt.legend()
plt.grid(True)
plt.show()

Output:

Figure_2

The output of the above code is a plot showing the learning curves for polynomial regression models with different degrees.

  • X-axis (Polynomial Degree) represents the degree of the polynomial features used in the regression models. The degrees are chosen from the list [1, 3, 10, 20].
  • Y-axis (Mean Squared Error) represents the mean squared error (MSE) of the model's predictions. Lower values indicate better performance.
  • Train Error (Blue Line with Circles): Decreases initially, then remains relatively constant.
  • Test Error (Orange Line with Circles): Decreases initially, then increases after a certain degree.

Interpretation of the Output : Identifying Overfitting with Polynomial Regression

  • Underfitting (Low Polynomial Degree): When the polynomial degree is low (e.g., degree 1), the model is too simple to capture the underlying trend in the data, resulting in high errors both on the training and testing sets.
  • Optimal Complexity (Moderate Polynomial Degree): There is an optimal degree of the polynomial (around 3 or 10 in this case) where the model achieves the lowest test error, indicating a good balance between bias and variance.
  • Overfitting (High Polynomial Degree): When the polynomial degree becomes too high (e.g., degree 20), the model becomes overly complex and starts fitting to noise in the training data. This leads to a decrease in training error but an increase in testing error, indicating poor generalization to new data.

By observing the learning curves, we can identify overfitting by looking for a large gap between the training and testing error. In this example, if the training error is much lower than the testing error, it indicates overfitting.

In the learning curves plot, if you observe a decreasing trend in the testing error followed by an increasing trend after a certain degree of polynomial features, it indicates that the model is overfitted.

Techniques to Mitigate Overfitting in Machine Learning Models

  • Regularization: Regularization techniques like L1 and L2 add a penalty for larger coefficients, discouraging complex models. This helps in reducing overfitting by simplifying the model.
  • Early Stopping: Early stopping involves monitoring the model's performance on a validation set and stopping the training when performance starts to degrade. This prevents the model from learning noise in the training data.
  • Data Augmentation: Increasing the dataset size by adding modified copies of existing data can help improve generalization. This is particularly useful in domains like image processing.
  • Feature Importance Analysis: Analyzing feature importance scores can help identify which features the model relies on most heavily. If the model assigns high importance to irrelevant or noisy features, it may be overfitting.
  • Model Complexity Evaluation: Evaluating the effect of changing model complexity (e.g., polynomial degree in polynomial regression) on performance can help identify overfitting. If increasing complexity improves training performance but not testing performance, the model may be overfitting.

Conclusion

Identifying overfitting is essential to ensure that machine learning models generalize well to unseen data. By using methods such as holdout validation, cross-validation, learning curves, regularization, feature importance analysis, and validation curves, you can effectively identify and mitigate overfitting. These techniques help in selecting the appropriate model complexity and hyperparameters, ensuring that the model performs well on both training and testing data


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