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Bio Unit 1 Notes

1. The electron transport chain (ETC) occurs in the mitochondrial inner membrane and involves the stepwise transfer of electrons from complexes I-IV and the pumping of protons into the intermembrane space. 2. The proton gradient generated by the ETC is used by ATP synthase (complex V) to phosphorylate ADP to ATP, a process known as oxidative phosphorylation. 3. Inhibitors and mutations affecting the ETC can decrease ATP production and increase oxygen consumption, potentially causing diseases like MELAS or Leigh syndrome.

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106 views7 pages

Bio Unit 1 Notes

1. The electron transport chain (ETC) occurs in the mitochondrial inner membrane and involves the stepwise transfer of electrons from complexes I-IV and the pumping of protons into the intermembrane space. 2. The proton gradient generated by the ETC is used by ATP synthase (complex V) to phosphorylate ADP to ATP, a process known as oxidative phosphorylation. 3. Inhibitors and mutations affecting the ETC can decrease ATP production and increase oxygen consumption, potentially causing diseases like MELAS or Leigh syndrome.

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Nkosi Jupiter
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Electron Transport Chain (ETC) and Oxidative Phosphorylation : Mnemonic

Dr. Sulabh Kumar Shrestha BiochemistryGeneral concepts

General concepts of ETC and Oxidative Phosphorylation:

1. Occurs in cell cytosol: Glycolysis

2. Occurs in mytochondrial matrix: Kreb’s (TCA) cycle

3. Occurs in mitochondrial inner membrane: ETC – Stepwise movement of electrons from high energy to
low energy that activates proton pump which transports proton from the mitochondrial matrix to
mitochondrial inter-membrane and generate Proton gradient.

4. Occurs in mitochondrial intermembrane space: Creation of proton gradient

5. Occurs in mitochondrial inner membrane: Oxidative phosphorylation – This proton gradient


generated from ETC is used by Oxidative Phosphorylation to generate ATP by phosphorylation of ADP to
ATP.

6. Oxygen is the final electron acceptor: We breathe in oxygen with our lungs, transport it with red
blood cells in our arteries to cells, and oxygen is ultimately used inside the mitochondria of every cell to
accept electrons at the end of the electron transport chain to form water.

ATP produced from a molecule of glucose:

Each NADH yields 2.5 ATP and each FADH2 yields 1.5 ATP.

1. Glycolysis:

 2 ATP

 2 NADH → 2 FADH2 (to ETC) = 3 ATP


2. Conversion of Pyruvate to Acetyl CoA:

 1 glucose forms 2 pyruvate

 2 NADH (to ETC) = 5 ATP

3. Kreb’s cycle: 2 Pyruvate from 1 glucose ~ 2 of each of following

 ATP from GTP (1 site: Succinyl-CoA synthetase): 2 ATP

 NADH (3 sites: Isocitrate dehydrogenase, Alpha-ketoglutarate dehydrogenase, Malate


dehydrogenase): 6 NADH = 15 ATP

 FADH2 (1 site: Succinate dehydrogenase): 2 FADH2 = 3 ATP

Total: (2+3) + (5) + (2+15+3) = 30 ATP

In contrast, total yield from 1 molecule of glycogen is 31 ATP:

1. Glycogen is converted into glucose-1-phosphate (G1P)

2. G1P is converted into glucose-6-phosphate (G6P) – this skips the 1st step of glycolysis catalized
by Glucokinase/Hexokinase which uses 1 ATP

MNEMONIC: NADH Sends Bad (negative) charge And Formulate ATP

Complex I (NADH): NADH : CoQ oxidoreductase

 NADH dehdrogenase

 Ubiquinone (CoQ)

Complex II (Sends): Succinate : CoQ oxidoreductase

Complex III (Bad charge):

 Cytochrome b/c1

 Cytochrome c

Complex IV (And): Cytochrome a/a3 (Cytochrome oxidase)

Complex V (Formulate): F0F1 ATP synthase complex

ATP
Complex I: NADH : CoQ oxidoreductase

 NADH dehdrogenase: transfers 2 electrons from NADH to Ubiquinone (CoQ)

 Ubiquinone (CoQ): Ubiquinone (QH2) is reduced to ubiquinol (free to diffuse within membranes)

 4 H+ ions move to intermembranous space

Complex II: Succinate : CoQ oxidoreductase

 Succinate dehydrogenase (In TCA cycle): converts succinate to fumarate and produces FADH2
from FAD

 Like in Complex I, FADH2 transfers 2 electrons to CoQ

 Other electron donors from FADH2 are: Fatty Acyl CoA Dehydrogenase, Glycerol 3 Phosphate
shuttle

 It is not a proton pump

Complex III (Fe/heme protein):


 Cytochrome b/c1: removes 2 electron from QH2 and transfers to 2 molecules of cytochrome C

 Cytochrome c: water-soluble and located in outer mitochondrial membrane

 Pumps 4 protons across membrane

Complex IV (Copper/heme protein): Cytochrome a/a3 (Cytochrome c oxidase)

 Removes 4 electrons from 4 molecules of Cytochrome c and trasfers to O2 [In hypoxia, rate of
ETC and ATP production decreases, which leads to increase in glycolysis (anaerobic in the
abscence of oxygen) leading to lactic acidosis]

 Produces 2 molecules of H2O (water)

 Pumps 4 protons across membrane

4 “C”s of Complex 4

 Cytochrome oxidase

 Copper/heme protein

 Carbon monoxide inhibits it

 Cyanide inhibits it

Complex V: F0F1 ATP synthase complex

 F0 component: Proton flows back to mitochondrial matrix from intermembrane space producing
energy

 F1 component: Energy produced is used to phosphorylate ADP using Pi

ATP:

 1 NADH = 2.5 ATP

 1 FADH2 = 1.5 ATP

INHIBITORS OF ELECTRON TRANSPORT CHAIN

Inhibitors of any step result in:

1. Decreased oxygen consumption

2. Increased intracellular NADH/NAD and FADH2/FAD ratio

3. Decreased ATP

Mnemonic: CRAP Tightens Muscle And Produces Muscle ACHe

Complex I inhibitors: CRAP


 Chlorpromazine

 Rotenone (Fish poison, pesticide – Remember “one” in the last)

 Amobarbital/Amytal (Barbiturate)

 Piercidin A

Doxorubicin inhibits CoQ

Complex II inhibitors: Tightens Muscle

 Thenoyltrifluoroacetone (TTA)

 Malonate

Complex III inhibitors: AND Produces Muscle

 Antimycin A (Antifungal)

 Napthoquinone

 Dimercaprol (ABC)

 Phenformin

 Myxothiazole

Complex IV inhibitors: ACH

Remember, All complex IV inhibitors end with “-ide”

 Azide

 Carbon monoxide, Cyanide

 Hydrogen sulphide

Cyanide poisoning: Thiosulfate forms thiocyanate which is less toxic and excreted by kidneys; Nitrites
convert hemoglobin to methemoglobin (which binds cyanide in blood before reaching to tissues) – must
be given shortly after exposure

Carbon monoxide poisoning: Headache, nausea, tachycardia, tachypnea, cherry-red lips and cheeks,
respiratory depression and coma (treated with oxygen)

Complex V inhibitor:

 Oligomycin (antibiotic)

ATP/ADP translocase inhibitor:

 Atractyloside (plant toxin)


UNCOUPLERS

Uncouplers uncouples ETC and oxidative phosphorylation by decreasing the proton gradient causing:

 Decreased ATP synthesis

 Increased oxygen consumption

 Increased oxidation of NADH

Because the rate of ETC increases, with no ATP synthsis, energy is released as heat. Important
uncouplers are:

1. 2,4 – Dinitrophenol (2,4-DNP)

2. Aspirin (and other salicylates)

3. Brown adipose tissue (thermogenin/natural uncoupling protein – kidneys, neck, breastplate,


scapula in newborns)

Mnemonic: Uncouplers are BAD

 Brown fat

 Aspirin

 Dinitrophenol

MUTATIONS IN ELECTRON TRANSPORT CHAIN (ETC)

Mutations in mitochondrial DNA affect highly aerobic tissues (nerve, muscle) and is characterized by:

1. Maternal inheritance

2. Metabolic (Lactic) acidosis

3. Massive proliferation of mitochondria in muslce (ragged red fibers)

Mnemonic: 3 “M“s of Mitochondrial DNA Mutation

1. MELAS (Mitochondrial Encephalopathy, Lactic Acidosis, Stroke): Mutation in Complex I

2. LHON (Leber’s Hereditary Optic Neuropathy – Loss of Central vision): Mutation in Cytochrome
reductase

3. Kearns-Sayre Syndrome (short stature, external ophthalmoplegia, pigmentary retinopathy, ataxia,


cardiac conduction defects): Mutation in Complex II

4. Leigh disease (lactic acidemia, developmental delay, seizure, extraocular palsies, hypotonia; fatal by
age 2): Mutation in Complex IV

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