Antimicrobial Activity and Stability of Stapled Helices of Polybia-Mp1
Antimicrobial Activity and Stability of Stapled Helices of Polybia-Mp1
RESEARCH ARTICLE
Received: 20 August 2017 / Accepted: 27 September 2017 / Published online: 26 October 2017
Ó The Pharmaceutical Society of Korea 2017
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Antimicrobial activity and stability of stapled helices of polybia-MP1 1415
Fig. 1 Schematic presentation of the ruthenium-based all-hydrocarbon stapling chemistry that tethers positions 6 and 10 yielding a stapled
peptide. Previous studies indicated that the configuration of the i,i ? 4 staple is exclusively cis (Bhattacharya et al. 2008; Zhang et al. 2008;
Phillips et al. 2011)
General
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1416 H. X. Luong et al.
bandwidth, and 0.1 cm path length. All spectra were con- Results
verted to a uniform scale of molar ellipticity after back-
ground subtraction. All the curves were smoothed using The secondary structures of the MP1 analogues were
standard parameters. determined by far ultraviolet circular dichroism (CD)
spectroscopy in a phosphate buffer (Fig. 3). Unmodified
Antimicrobial assay analogue MP1 appeared to be partially helical in the given
aqueous solution, showing 25.6% of helicity. All stapled
The minimum inhibitory concentration (MIC) of each analogues of MP1 displayed the characteristic shape of CD
peptide was determined in duplicate by the standard broth spectra for a-helices: two negative minima at around
microdilution method (Jorgensen and Ferraro 1998) with a 208 nm and 222 nm along with a positive maximum near
slight modification. Briefly, bacteria were incubated in 190 nm (Chen et al. 1972). % Helicities of peptides MP1S,
2 ml of Luria–Bertani (LB) broth at 37 °C overnight. The MP1S-D8N, and MP1S-Q12K were 96.1, 89.4, and
peptides were prepared from 0.2 to 200 lg/ml in 96-well 81.8%, respectively.
round-bottom microtiter plates with twofold dilutions in Antimicrobial and hemolytic activities of the peptides
distilled water. The peptides and the bacterial inoculums are summarized in Table 1. In the antimicrobial assay, the
were then diluted using LB broth and treated with bacterial stapled analogue MP1S showed a 7.7-fold increase in
suspension (106–108 colony-forming units (CFU)/ml). antimicrobial activity against Bacillus subtilis (B. subtilis)
After 24 h-incubation at 37 °C, the MIC of each peptide and Staphylococcus aureus (S. aureus) relative to its
was determined based on the visible turbidity in each well. unmodified counterpart MP1 (Table 1, entry 1 and 2).
All bacterial strains tested in this assay were obtained from However, MP1S did not show any improved activity
the Korean Collection for Type Culture (KCTC) at the against Staphylococcus epidermidis (S. epidermidis) and all
Korean Research Institute of Bioscience and Biotechnol-
ogy (KRIBB, Daejeon, Korea).
Hemolysis assay
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Antimicrobial activity and stability of stapled helices of polybia-MP1 1417
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1418 H. X. Luong et al.
Hilinski 2012). Furthermore, it is well known that the residue (Lys) at position 12 would reinforce the salt bridge
incorporation of the all-hydrocarbon staple significantly network on the hydrophilic face of the MP1 helix. How-
enhances proteolytic stability of peptides (Schafmeister ever, MP1S-Q12K exhibited an even lower helicity than
et al. 2000; Verdine and Hilinski 2012). Therefore, one can MP1S-D8N. We attribute the helix-destabilizing effect of
anticipate that the stapled analogues of polybia-MP1 would the Gln-to-Lys substitution in the stapled scaffold to the
not only be more potent in antimicrobial activity but also increased electrical field caused by the additional cationic
more stable against proteolytic cleavage. residue (dos Santos Cabrera et al. 2008).
For the sites of staple incorporation in the polybia-MP1 Compared to its unmodified control MP1, the stapled
sequence (MP1), positions 6 and 10 were chosen to gen- analogue MP1S exhibited a significant improvement in
erate a stapled analogue MP1S (Fig. 2a); leucine and ala- inhibitory activity against two Gram-positive strains, B.
nine at the respective positions are located in the middle of subtilis and S. aureus, but failed to show any increased
the hydrophobic face of the amphipathic helix of MP1, and activity against the other Gram-positive S. epidermidis and
replacing these residues with the hydrophobic staple would all Gram-negative strains tested in this study (Table 1,
minimize the disruption of its amphipathicity (Fig. 2b). entries 1 and 2). The incorporation of the helix-stabilizing
Aspartate (Asp) at position 8 is known to play a key role in staple also increased in hemolytic activity, most likely due
contributing to the relatively low hemolytic activity of to the increased hydrophobicity by the hydrocarbon staple.
polybia-MP1 (dos Santos Cabrera et al. 2008). To examine Similar results have been observed in our previous studies,
if Asp residue maintains its role in a stapled scaffold, we and therefore further sequence modifications were required
designed MP1S-D8N, which bears an asparagine (Asn) to optimize the physical and biological properties of the
residue in place of Asp at the position. Polybia-MP1 has six stapled analogues of linear AMPs (Pham et al. 2013; Dinh
charged functional groups in its sequence, three lysine et al. 2014). Compared to MP1S, MP1S-D8N displayed
(Lys) and two Asp residues and a free N-terminal amino more potent inhibitory activity not only against B. subtilis
group. This makes the net charge of MP1 ?2, which is and S. aureus but also against S. epidermidis (Table 1,
relatively small compared to other cationic AMPs. There- entry 3). This improved antimicrobial activity of MP1S-
fore, we designed MP1S-Q12K, which bears an additional D8 N may be attributed to the increased net charge, which
Lys residue in place of glutamine (Gln) at position 12. We would promote a more favorable interaction with the
envisioned that this substitution would expand the cationic anionic bacterial membranes. However, MP1S-D8N also
patch on the hydrophilic face of MP1 helix, which would showed a notably increased hemolytic activity. This is
thereby fortify its interaction with bacterial membrane. possible because, despite the increased net charge, the
Structural analysis of the peptides using CD spec- hydrophobicity of MP1S-D8N is higher than that of MP1S
troscopy confirms the highly effective helix-stabilizing due to the elimination of a charged residue by the Asp-to-
capability of Verdine’s all-hydrocarbon stapling system Asn substitution. This result also confirms the important
(Fig. 3a). Helical contents of all stapled analogues were role of Asp residue at position 8 in lowering hemolytic
increased by more than a three-fold compared to their activity in the polybia-MP1 sequence (dos Santos Cabrera
unmodified counterpart, MP1 (Fig. 3b). MP1S appears to et al. 2008). MP1S-Q12K also displayed improved inhi-
be the most helical among this panel of peptides, showing bitory activity against Gram-positive strains compared to
96% helicity, which is 3.7-fold higher than that of MP1. MP1S (Table 1, entry 4), which may also be explained by
MP1S-D8N and MP1S-Q12K showed slightly lower its increased net charge resulted from the Gln-to-Lys sub-
helical contents (89.4 and 81.8%, respectively). Asp resi- stitution at position 12. Interestingly, unlike MP1S-D8N,
due at position 8 is known to form a salt bridge network the impact of the substitution on hemolytic activity was
with three Lys residues at positions 4, 5, and 11 and a Gln negligible. Although both Asp-to-Asn and Gln-to-Lys
residue at position 12 that makes notable contribution to substitutions result in the same net charge (?3), the latter
helix stabilization in the polybia-MP1 sequence (dos San- would not cause an increase in hydrophobicity since it adds
tos Cabrera et al. 2008). MP1S would still maintain this an ionic residue while the former removes one. Therefore,
salt bridge network as an additional helix-stabilizing ele- the relatively low hemolytic activity of MP1S-Q12K may
ment, which may contribute to the unusually high level of be due to its relatively low hydrophobicity compared to
helical content of MP1S. However, the salt bridge network MP1S-D8N. It is interesting to note that both MP1S-D8N
would be significantly weakened with the Asp-to-Asn and MP1S-Q12K showed relatively low helicity compared
substitution at position 8, to which we attribute the rela- to MP1S but their inhibitory activity was more potent. This
tively low helicity of MP1S-D8N in comparison to MP1S. suggests that, upon stabilization by a staple, biological
With this perspective, we predicted MP1S-Q12K to be activity is determined more by their sequence rather than
more helical than MP1S because we expected that the the subtle difference in helicity.
substitution of a neutral amino acid (Gln) with a cationic
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Antimicrobial activity and stability of stapled helices of polybia-MP1 1419
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Research Foundation of Korea (NRF) grant funded by the Korea Almeida RN, Pagnocca FC, Konno K, Palma MS (2005)
government (MSIT) (2015R1D1A1A01060265). Structural and functional characterization of two novel peptide
toxins isolated from the venom of the social wasp Polybia
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