Caie A2 Level Chemistry 9701 Theory v1
Caie A2 Level Chemistry 9701 Theory v1
ORG
CAIE A2 LEVEL
CHEMISTRY (9701)
SUMMARIZED NOTES ON THE THEORY SYLLABUS
CAIE A2 LEVEL CHEMISTRY (9701)
Note: specific value may not be given and you must use
combination of enthalpies e.g. Exothermic Processes:
Top to bottom:
ΔHfθ
θ
ΔHea
θ
ΔHlatt
θ
ΔHhyd
bonding is
pure ionic, otherwise it is intermediate
between ionic and covalent
Radius of ion: the smaller the radius/smaller the size of water to form a very dilute solution under standard
ion, greater the charge density conditions (can be +ve or –ve)
Charge on ion: Greater charge density, greater e.g. NaCl(s) + aq → NaCl(aq)
electrostatic attraction between ions, ΔHlat
θ more
Enthalpy change of hydration
(ΔHθhyd ):
enthalpy change
exothermic, more stable compound when one mole of specified gaseous ions dissolves in
sufficient water to form a very dilute solution under
standard
conditions
1.4. Electron Affinity
e.g. Na+(g) + aq →
Na+(aq)
First electron Affinity (ΔHθea ): enthalpy change when 1
Factors affecting Δ H θ hyd =
factors affecting Δ H θ lat
mole of electrons is added to 1 mole of gaseous atoms to Solubility of ionic salts depend on value of
ΔH θ sol: the
form 1 mole of gaseous anions under standard more –ve = more
soluble
conditions
e.g: Cl (g) + e- → Cl- (g) 1.7. Ion Polarization
1st electron affinity is exothermic
2nd, 3rd… electron affinities are endothermic
because Ion polarization: distortion of the electron cloud on an
when electron added to –ve ion, increased repulsion anion
by a neighbouring cation
present
therefore requires input of energy
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CAIE A2 LEVEL CHEMISTRY (9701)
Radius of cation increases down group ∴ charge density Pb2+(l) + 2e- → Pb(s)
decreases
Attraction of cation to water molecule decreases ∴
value At the anode: negative ions oxidized to atoms/molecules
of ΔHhyd
θ becomes less
exothermic
2NO3-(l) → NO2(g) +
O2(g) + 2e-
2eZ −
Q = It
in Coulombs (C)
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CAIE A2 LEVEL CHEMISTRY (9701)
Metal loses e-, forms +ve ions Metal ion gains e-, solid metal
= oxidation occurs deposited = reduction occurs
Cell Notation
Zn(s) | Zn2+(aq) Cu2+(aq) | Cu(s)
The more –ve (less +ve) the The more +ve (less -ve) the
Eθ, the more easily it gets Eθ, the more easily it gets 2.8. Measuring Eθ of a Half Cell using
oxidized ∴ stronger reducing reduced ∴ stronger oxidizing
agent agent S.H.E.
Metals in contact with their aq. solution
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CAIE A2 LEVEL CHEMISTRY (9701)
Reaction Eθ
Cl2 + 2e-→ 2Cl- +1.36
Fe3+ + e- ⇌
Fe2+ E θ = 0.77V
z
θ
E = − (+0.77)
Add Eθs together. If positive, reaction occurs and is feasible If conc. less than 1 mol dm-3,
log [oxidized f orm] is –ve
otherwise, does not occur spontaneously. and E is less
than E θ
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CAIE A2 LEVEL CHEMISTRY (9701)
Overall reaction:
constant
Alkaline electrolyte: 3.2. pH Scale
-ve Electrode (anode): Gives strength of acid depending on
2H2(g) + 4OH-(aq)
4H2O(l) + 4e- H+
+ve Electrode (cathode): Use – log of values as they are very small giving pH
Lower pH value, stronger the acid
O2(g) + 2H2O(l) + 4e-
4OH-(aq)
− log [H + ] = pH ⇔
[H + ] = 10−pH
Overall reaction: Calculating pH of a strong acid:
Find the pH of 3.6 × 10-5 mol dm-3
HNO3
O2 + 2H2(g) 2H2O(l)
Solution
It is a strong acid and dissociates completely the conc. of ions
OH- ions removed at -ve electrode replaced by those is
equal to conc. of the acid
produced at +ve electrode so conc. of electrolyte remains
constant [H + ] = [HNO3 ] = 3.6 × 10−5
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CAIE A2 LEVEL CHEMISTRY (9701)
3.7. Calculating pH of Buffer Solutions
Calculating pH of a strong base:
Calculate the pH of a solution of sodium hydroxide of [Salt]
concentration
0.05 mol dm-3 pH = pKa + log ( )
[Acid]
Solution
It is a strong base and dissociates completely the conc. of Calculating pH of buffer solution:
ions is
equal to conc. of the solution A buffer solution is made by adding 3.28g of CH3COONa to 1
dm3 of 0.01 mol dm-3 CH3COOH
[OH − ] = [NaOH] = 0.05
Calculate pOH by logging
1. What is the pH of this buffer (Ka
= 1.8 × 10−5 )
pOH = − log 0.05 = 1.30 What is the change in pH when 1 cm3 of 1 mol
dm-3 NaOH is
added to 1 dm3 of the buffer?
Calculate pH by using the following Solution
Part (a):
pH + pOH = 14
Calculate the moles and concentration of the salt
pH = 14 − pOH = 14 − 1.30 = 12.7 Moles
Mass 3.28
3.4. Buffer Solutions = = = 0.04
Molar Mass 82
The enzyme carbonic anhydrase is present to supply Use formula to calculate pH:
HCO3- ions and increase its conc. similar to
acidic buffers
0.0410
pH = − log (1.8 × 10−5 ) + log ( ) =5.40
8.99 × 10−3
If H+ increases: If H+ decreases:
Eq. shifts to the left Eq. shifts to the right Find the change in pH:
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CAIE A2 LEVEL CHEMISTRY (9701)
Calculating pH of buffer solution with different volumes of Write down the equilibrium expression
acid and
salts:
What is the pH of the buffer solution formed when 40cm3 of Ksp = [M g 2+ ][2F − ]2
2
HNO2(aq) + NaOH(aq) NaNO2(aq) +
H2O(l) 10−3 ) × 2 × (1.22 × 102 )
Calculate the moles of each reactant
Ksp = 7.26 × 10−9 mol3 dm−9
Moles of HNO2
3
When a sparingly soluble salt is shaken with distilled 3.10. Common Ion Effect
water and
left to settle, the water contains aq. ions from
the salt in very
small conc. and a dynamic equilibrium is Common ion effect: lowering of solubility of an ionic
set up between ions and
insoluble solid compound
by addition of a common ion to the solution
Solubility product (Ksp): product of conc. of each
ion in a
saturated solution of sparingly soluble salt at 298K raised
to the power of moles in dissociation equation e.g. Calculating solubility with common ion:
Fe2S3(s) ⇌
2Fe3+(aq) + 3S2-(aq) BaSO4 is a sparingly soluble salt (Ksp
= 1.0 × 10−10 mol2
Ksp =
2Fe3+23S2-3
units: mol5 dm-15 dm-6). Compare the
solubility at 298K of BaSO4 in an aq.
The conc. of ions is independent of amount of solid solution of 0.1 mol
dm-3 H2SO4 to in pure water
Ksp values change only with temperature Solution
Concentration of ions = solubility of salt
Calculate conc. of Ba2+ in pure water
Calculating solubility product from solubility: Ksp = $\lbrack Ba^{2+}\rbrack \lbrack So_4^{2-} \rbrack$ and
A saturated solution of magnesium fluoride, MgF2, has a both conc. are equal $\therefore$
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CAIE A2 LEVEL CHEMISTRY (9701)
Conc. of Solute in Solvent 1
3.11. Titration Curves Kpc =
Conc. of Solute in Solvent 2
100 × 10−3
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CAIE A2 LEVEL CHEMISTRY (9701)
6.0×10−4
conc. of NH∗3(org) 50×10−3 Half-life,
K pc = = Order Graph of
conc. of NH∗3(aq) 9.4×10−3
t1/2
100×10−3
Kpc = 0.1277
[A]1 Constant
4. Reaction Kinetics
[A]2 Increases
4.1. Rate of Reaction
Rate of reaction is the change in concentration of
products/reactants per unit time
2
1
Order
Half-life,
Graph of
∴R= [A] [B ]
3
t1/2
Conc./Time Rate/Conc.
4.4. Calculating Rate Constant from t1/2
Only used with first order reactions
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CAIE A2 LEVEL CHEMISTRY (9701)
therefore:
When temp. is increased, the k.e. of reacting molecules R = k[N O2 ][F2 ]
increases
resulting in more successful collisions
The rate of reaction is dependent on the slowest step that OH- conc. can be found using titration
Plot graph and calculate rate of reaction
needs the
highest activation energy.
Rate equation includes only reactants that are present in
the
rate-determining step. Continuous: method that involves
monitoring a physical
The orders with respect to the reactants are the moles of property over a period of time
the
reactants in the rate determining step
Change in Volume of Gas Produced:
Hydrolysis of Alkyl Halide Mg + 2HCl MgCl2 + H2
Primary alkyl halide mechanism: Measure change in volume of gas using a gas syringe
slow Take down readings at regular intervals
C3 H7 C H 2 B r + OH −
[C3 H7 B rOH]
∴ k[C3 H7 C H2 B r][OH − ]
CH3COCH3 + I2
CH3COCH2I + HI
Tertiary alkyl halide mechanism: I2 starts brown, fades through orange to yellow to
colourless as iodine used up.
slow
(CH3 )3 CBr (CH3 )C + + Br−
Colorimeter measures amount of light absorbed as it
passes through
solution; recorded as absorbance.
f ast
(CH3 )C + + OH −
(CH3 )COH + Br−
∴ R = k[(CH3 )3 CBr]
Constructing rate equation for multistep
reaction
The mechanism for the production of NO2F involves
slow
NO2 + F2 NF2 +
O2
f ast
NF2 + NO2 NO2F + NF
Before experiment, create calibration curve by finding
f ast
NF + O2 NO2F
absorbance of
different conc. I2 and plot a graph of
a. What is the overall stoichiometric equation?
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CAIE A2 LEVEL CHEMISTRY (9701)
concentration
against absorbance
4.11. Examples of Heterogeneous
During experiment, measure absorbance from meter at
regular
intervals, and use calibration curve to convert Catalysis
values into
concentrations
Iron in Haber process:
Iodine-Peroxydisulfate Reaction
Adsorption;
S2O82- + 2I- $\xrightarrow{slow}$
2SO42- + I2
bonds
Mechanism of the catalysed reaction: formed
between
Reaction 1: reduction of Fe3+ to Fe2+ ions
by I- ions
reactant
2I- + 2Fe3+ $\xrightarrow{Low\ Ea}$ I2 + 2Fe2+ and iron:
Reaction 2: oxidation of Fe2+ to Fe3+ ions by strong
S2O82- ions enough to
weaken
S2O82- + 2Fe2+ $\xrightarrow{Lower\ Ea}$
2SO42- + 2Fe3+ covalent
bonds
within
N2/H2,
weak
enough to
break and
allow
Oxides of Nitrogen and Acid Rain products to
leave
Reaction;
adsorbed N
and H
atoms react
to form
NH3
SO3 can then react with water to form
H2SO4
Desorption;
bonds
4.10. Heterogeneous Catalysis break
between
Catalyst and reactants in different physical state NH3 and
Catalyst provides surface on which reaction occurs
surface
Reactant particles adsorbed on surface on collision
Diffusion of
with
catalyst
NH3 away
Molecular rearrangement occurs - bonds in reactants
break and
new bonds in product formed from
Product molecules desorbed from surface surface of
Rate of reaction dependant on surface area of catalyst iron
Adsorption: weak bonds formed between reactant
molecules &
surface of catalyst (diffusion on to surface) png)
Desorption: releasing of product molecules from surface
of
catalyst (diffusion away from surface)
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CAIE A2 LEVEL CHEMISTRY (9701)
5. Chemistry of Transition
Elements
Transition element: a d-block element that forms one or dxy , dxz and dyz have
d-orbitals in between axis
more
stable ions with incomplete d orbitals dx2 −y2 and dz2 have d-orbitals along
axis
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CAIE A2 LEVEL CHEMISTRY (9701)
Octahedral
4 from oxygen
2 from nitrogen
4
5.8. Writing Names of Complexes
Tetrahedral
Square Planar
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CAIE A2 LEVEL CHEMISTRY (9701)
(most Ni and Pt) Not ligand exchange; hydroxide ions remove hydrogen
ions from water
ligand
Reaction with Ammonia Solution
\[Ni(CN)4\]2-
Small amount of ammonia
2
Linear
\[Ag(NH3)2\]+
Excess ammonia
Geometric isomerism (cis-trans)
Pt(NH3)2Cl2
Reaction with Chloride Ions
cis-platin trans-platin
Optical isomerism 5.14. Ligand Exchange and Stability
[N i (N H2 C H2 C H2 N H2 )3 ]
Constant
Ligand exchange: a more powerful ligand will substitute a
less
powerful ligand from a cation of the complex and this
can produce a
change in colour and shape
2+ 4
[Cl− ]
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CAIE A2 LEVEL CHEMISTRY (9701)
The greater the Kstab value, the more stable the complex Small ΔE = light absorbed from red = complex
blue-ish
Kstab values may be given on log10 scale as
values large
Stability constants for complexes with bi/polydentate
ligands very
high
6. Arenes
5.15. Colour of Complexes 6.1. Bonding in Benzene Ring
The five d-orbitals in isolated transition metal atoms/ions
are
degenerate; all at the same energy
Coordinate bonding from ligands cause five d-orbitals to
split into
two sets of non-degenerate orbitals at ΔE
For octahedral complexes, ligands approach along axis
and increases
repulsion with dx2 −y2 and dz 2 orbital
the
splitting of d-orbitals):
Magnitude of ΔE
Strength of ligands
Oxidation state of metal ion
Phenylethene
Geometry of complex Methylbenzene
Colour Spectrum
wavelength increases
Phenylamine
f requency and energy increases Nitrobenzene
R O Y G B I V
Phenyl ethanoate
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CAIE A2 LEVEL CHEMISTRY (9701)
Regenerating catalyst:
6.4. Electrophilic Substitution
2HSO4- + H3O+ +
H+→ 2H2SO4 + H2O
Mechanism
Alkylation / Acylation
An H-atom on the ring can be substituted by other
AlCl3
atoms/groups C6H6(l) + RCl/RCOCl
C6H5R/C6H5RCO +
HCl(g)
Reagent:
Reagent:
dry Cl2 gas / pure Br2 liquid
Cl2(g)
Conditions:
Condition:
Temp./press.: r.t.p.
u.v. light
Catalyst: anhydrous AlCl3(s) / FeBr3(s)
With excess Cl2 a mixture of di, tri chloromethyl benzene
Generating electrophile:
can be obtained
catalysts are e- deficient halogen carriers, form
dative
bond drawing e- from halogen molecule
producing X+
Benzoic Acid
AlCl3 + Cl2 → [AlCl4]- +
Cl+
Regenerating catalyst: C6H5CH3(l) + 3[O] →
C6H5COOH(l) + 2H2O
H+ + −
[AICl4 ] → HCl + AlCl3
Type of reaction:
oxidation
Nitration Reagent:
KMnO4(aq) or
K2Cr2O7(aq)
C6H6(l) +
H2SO4/HNO3 →
C6H5NO2(l) +
H2SO4(g) + H2O
Condition:
Reagent:
heat under reflux (2 to 3 hours)
nitrating mixture
Alkyl gp. always oxidized regardless of chain length
conc. HNO3 / conc. H2SO4
If more than one alkyl gp., each one oxidized
Condition:
Temp.: 45-55oC under reflux
6.8. Ring Activating/Deactivating
Generating electrophile:
2H2SO4 + HNO3 → 2HSO4- + NO2+ + H3O+ Groups
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CAIE A2 LEVEL CHEMISTRY (9701)
7. Haloarenes
7.1. Reactivity of Benzene &
Chlorobenzene
OH group forms H-bonds with water molecules however
there are weak
VDW forces due to heavy nonpolar
Chlorobenzene is less reactive than benzene because:
benzene ring hence phenol partially
soluble in water
Chlorine is a ring deactivating group Solution of phenol is slightly acidic because –OH in
Chlorine is more electronegative than carbon, and draws phenol breaks
to form H+
electrons in
the ring towards itself. Bond breaks readily because phenoxide ion formed is
Hence electron density around ring decreases, less stabilized by
partial delocalization of –ve charge over the
attractive for
electrophiles and so reaction is slower benzene ring
H2O
7.3. Nucleophilic Substitution Reaction Type of reaction:
Neutralization
Hydrolysis Reagent:
sodium hydroxide
C6H5Cl(l) + NaOH(aq)
→ C6H5OH(l) +
NaCl(aq) Condition:
Type of reaction: r.t.p.
nucleophilic substitution Regenerating phenol:
Reagent: When strong acid (HCl) added to solution of sodium
sodium hydroxide phenoxide,
phenol regenerated
Condition:
C6H5O-Na+(aq) + HCl(aq) →
C6H5OH(l) + NaCl
Temp.: 300-330oC Initially dense white emulsion formed then slowly oily
Press.: 150-300 atm liquid
layer of phenol separates
Rate of Hydrolysis: (slowest to fastest)
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CAIE A2 LEVEL CHEMISTRY (9701)
8.5. Relative Acidities
Reaction with Sodium
r.t.p
C6H5OH(l) + Na(s)
C6H5O-Na+(aq) + ½H2(g)
Type of reaction:
metal and acid, redox
Condition:
r.t.p. The stronger the acid:
Reacts with Na liberating H2 gas Higher the Ka value
Note: phenol does not react with metal carbonate to
More easily H+ is donated
liberate
CO2 hence shows its fairly weaker than other
More stable is the conjugate base
carboxylic
acids
8.4. Reaction with Benzene Ring Ethanol: C2H5OH + H2O
⇌ C2H5O- +
H3O+
Bromination
Type of reaction: Phenol: C6H5OH + H2O
⇌ C6H5O- +
H3O+
electrophilic substitution
Reagent: Ka: 10-10 mol
dm-3
dilute nitric acid Ability to donate H+ ions:
Condition:
OH is a ring activating gp. & the lone pair of e-s on
O
r.t.p.
If concentrated nitric acid used, then trinitrophenol becomes part of delocalized e- system
produced Decreases e- density on O of OH and attraction
between O and H decreases so H+ lost more easily
Stability of conjugate base:
In phenoxide ion, -ve charge on O delocalized around
ring and
reduces tendency to attract H+
Conjugate base stable
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CAIE A2 LEVEL CHEMISTRY (9701)
Test 1:
9.3. Nucleophilic Condensation
Reagent: Iron(III) Chloride
(FeCl3(aq)) – yellowish brown Mechanism
Observation: violet colour obtained
Test 2:
9. Acyl Chlorides
9.1. Preparation of Acyl Chlorides
These are derivatives of carboxylic acids; -OH gp. of acid 9.4. Nucleophilic Condensation
replaced
by Cl
Named after corresponding acid using suffix –oyl Reactions
followed by
chloride
Hydrolysis
e.g. ethanoyl chloride
Forming Amides
Primary amides:
R—CO—Cl + NH3 →R—CO—NH2 + HCl
Reagent: ammonia
Secondary amides:
R—CO—Cl + R’NH2 → R—CO—NHR’ + HCl
Reagent: alkyl amine
Note: If excess NH3 used,
the HCl formed is neutralized to
NH4Cl
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CAIE A2 LEVEL CHEMISTRY (9701)
−Increasing ease of hydrolysis→ Chlorine atoms show a –ve inductive effect withdrawing –
Alkyl ve charge
from the molecule, reducing the strength of the
Aryl Chlorides Acyl Chlorides
Chlorides O–H, and hence
making H+ be lost more easily
Conjugate base is more stabilized due to the extended
R–Cl
delocalization
of the negative charge on the –COO- and so
less likely to
bond with a H+ ion
Aryl chlorides do not undergo hydrolysis at r.t.p because
the
p-orbitals from chlorine overlap with delocalized p-
electrons giving
the C–Cl bond a double bond character Note:
Alkyl chlorides require a strong alkali (NaOH) under reflux
to
be hydrolysed as carbon doesn’t have a high δ + If an e- donating gp. present molecule less acidic
Acyl chlorides undergo hydrolysis with neutral water at If an e- withdrawing gp. present molecule more acidic
r.t.p
because the carbon atom is bonded to two highly
electronegative
atoms hence has a high δ + therefore
10.4. Oxidation of Carboxylic Acids
attack by a nucleophile
is much more rapid
Acid + Oxidizing Agent (warm) $\rightarrow$ CO2 + H2O
10. Carboxylic Acids Methanoic Acid
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CAIE A2 LEVEL CHEMISTRY (9701)
nucleophilic substitution
Reagent:
hot conc. NH3 in ethanol
Condition: Lone pair of e-s on N
Ethyl e- donating group,
heat under reflux gets partially delocalized
by interaction with increases e- density on
N
Reduction benzene e- cloud
R–CO–NH2 + 4\[H\] → R– Lone pair less available Enhanced ability to
R–C ≡
N + 4\[H\] →
R–CH2NH2
CH2NH2 + H2O for coordination to donate lone pair of e-s
Type of reaction: reduction of Type of reaction: reduction of proton to proton
a nitrile an amide Alkyl ammonium cation
Reagent: hydrogen gas Reagent: hydrogen gas formed more stable
Reducing Agents (catalyst):
Reducing Agent (catalyst): than NH4+ cation from
LiAlH4 in dry ether ammonia
LiAlH4 in dry ether
Nickel
Conditions: high temp. and
Conditions: r.t.p. 11.6. Reactions of phenyl amine
pressure
Bromination
11.3. Formation of Aryl Amines
Reduction
Type of reaction:
electrophilic substitution
Reagent:
aq. Bromine
Type of reaction:
Conditions:
reduction of nitrobenzene
r.t.p. (no catalyst)
Reagent:
Forms a white ppt.
conc. HCl with Tin
Condition:
heat Diazotization
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CAIE A2 LEVEL CHEMISTRY (9701)
not available to be
donated to e.g. H+ ions
Hence, amides are neutral
Type of reaction:
nucleophilic substitution
Reagent:
conc. NH3(aq)
Condition:
r.t.p.
Example:
Zwitterion: ion that contains regions of +ve & –ve charge
Amino acids solids at r.t.p. due to ionic bonds that exist
between
zwitterions
Presence of zwitterions means that amino acids are
ethanoyl chloride + methyl amine → N-methyl soluble in water
methanamide
11.13. Amino Acids in Acidic/Basic
11.9. Neutrality of Amides Conditions
The presence of the electron withdrawing oxygen atom
means that the
lone pair on the amide’s nitrogen atom is
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CAIE A2 LEVEL CHEMISTRY (9701)
12. Polymerisation
12.1. Addition Polymerisation
11.14. Peptide Bonds
Monomers are alkenes; polymer formed is polyalkene
Amide link formed by nucleophilic attack of –NH2 group Alkene joins to itself, no molecule lost
of
one amino acid on –COOH group of another E.g. nA → −A − A − A − A− or (−A−) n
Physical Properties of Polymers:
Electrophoresis is used to separate, identify and purify Hard plastic made with non-
Highly branched chains
amino
acids obtained when protein hydrolysed polar polymer
Technique based on separating ions placed in an electric Low melting point Unbranched chains
field. When
sample placed between two electrodes: Chains cannot pack closely
+ve charge ions move towards –ve charged electrode due to random branching High melting point
–ve charge ions move towards +ve charged electrode leaving gaps
Closely packed chains, less
= low density
gaps
= high density
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CAIE A2 LEVEL CHEMISTRY (9701)
Natural Rubber:
Nylon 6, 6
Monomers:
Polyamides Polyesters
Monomers joined by ester
Monomers joined by amide
link:
(peptide) link:
Nylon 6
Polymer:
Benzene-1, 4-diamine benzene-1, 4-dioic acid
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CAIE A2 LEVEL CHEMISTRY (9701)
adenine guanine thymine cytosine
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12.6. Proteins
Proteins: a natural polyamide; many polypeptide chains 12.8. DNA Replication
held together
by intermolecular forces
Amino acid residue: an amino acid unit within a Process of copying DNA during cell division
polypeptide chain
Semi-conservative replication:
Examples of Amino Acids:
H-bonds and VDWs between base pairs in part of a DNA
Non-Polar R-Group: Polar R-Group: are broken and
this part of the double helix unwinds
In the nucleus, there are nucleotides to which two extra
phosphates
have been added (nucleotide triphosphate)
The bases of the nucleotide triphosphates pair up with
complimentary
bases on the old strand and H-bonds &
VDW forces form between
original and new strands.
serine Enzymes catalyse the polymerization reaction
alanine valine cysteine Each new strand contains a sequence of bases that is
Electrically Charged R-Group: complimentary
to the original strand e.g.
Original strand: – A T G C C G T T A A G T –
New strand: – T A C G G C A A T T C A –
aspartic acid lysine
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12.7. Structure of DNA
Significance of H-bonding in replication of DNA:
DNA are polynucleotides; made by condensation When a new strand built on template of old strand,
polymerization of
nucleotides. the incoming
nucleotide is selected for its ability to
pair with base in the
old strand
H-bonding plays an important role in the recognition
Functions of deoxyribonucleic acid (DNA): as
different number of H-bonds involved in each pair
Can make copies of itself so that genetic information can
be pass on
from generation to generation 12.9. Non-solvent based Adhesives
Contains sequence of bases that form genetic code used
to synthesize
proteins Silyl modified polymers (SMP):
Nucleotides in DNA are made up of:
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CAIE A2 LEVEL CHEMISTRY (9701)
Disadvantages of plastics:
Epoxy Resins: Non-biodegradable
On combustion, give out harmful vapours
Example of thermosets: polymers that form extensive
networks of
covalent cross-links
Very strong and cannot be melted and remoulded Biodegradable Plastics:
Formed by reacting a monomer with expoyethane
Can contain small amounts of starch: bacteria and fungi
(triangular molecule
CH2CH2O) and a diamine are mixed
in moist
soil can break it down into smaller compounds,
For example: increase surface area
and easier to decompose
Can be made from monomers derived from plants e.g.
PLA: soil
microorganism can digest it easily
Can be hydrolysed in acidic conditions:
Polyamides broken down to carboxylic acids & amines
Polyesters broken down to carboxylic acids & alcohols
The polymer produced forms a giant network of cross-
linking with
other polymers:
Photodegradable Plastics:
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Next, calculate entropy change in the surroundings Form Hess’s cycle and calculate Free Energy as you would
θ
−ΔHreaction enthalpies
(using moles etc.)
ΔSsurroundings
θ =
T
Negative sign part of equation, always put it Enthalpy-driven reaction: flow of thermal
If ∆H > T∆S energy provides most of the free energy in
Use values calculated to find total entropy change the reaction
ΔS θ total = ΔS θ system −ΔS θ surroundings
Entropy-driven reaction: increased disorder
If ΔStotal
θ positive, reaction
is feasible If ∆H < T∆S provides most of the free energy in the
reaction
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re-running in
a different solvent
mobile phase
and adsorbed to the stationary phase Technique Separation Method
Adsorption: separation due to different attraction Paper chromatography Partition
between the
compound and the stationary phase, Thin-layer chromatography Adsorption
relative to their solubility in
the solvent Gas/liquid chromatography Partition
The solid in stationary phase is either Al2O3
or SiO2; it is
spread onto a microscope slide as a slurry
using water
and then dried into a white coating 14.5. Mass Spectrometry
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14.7. Proton (1H) NMR Spectroscopy Causes peaks to split in particular patterns due to
spin-spin
splitting
14.8. (n + 1) Rule
n hydrogens on an adjacent carbon atom will split a peak
into
n + 1 smaller peaks
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of hydrogens
attached to the carbon atom next door
15. Organic Synthesis
14.9. Identifying –OH or –NH Signal
15.1. Chiral Drugs from Natural Sources
The –OH signal always appears as a single peak because
the H atom is
exchanged rapidly with those in water Most chiral drugs extracted from natural sources often
causing it to appear
unaffected to spin-spin splitting contain only
a single optical isomer.
In biological systems, molecules are synthesized and
ROH + H2O $\rightleftharpoons$ RO + H3O
broken down by
reactions involving enzymes
Deuterium is an isotope of hydrogen that behaves These reactions work by a lock-and-key mechanism and a
chemically like H
but different magnetic properties to H molecule has
to be the right shape to fit the enzyme
so don't produce peaks in the
area of spectrum with H Different arrangements around a chiral center will force
Organic compounds are shaken with deuterium oxide an entirely
different shape on the molecule, and it may
(D2O)
and the H-atoms bonded to electronegative atoms no longer fit the enzyme
(–OH and –NH) are
replaced; deuterium exchange So enzyme systems will tend to produce a single optical
isomer
because that is the only shape, they work with
ROH + D2O $\rightarrow$ ROD +DHO
When this is done, the NMR signal due to –OH and –NH 15.2. Synthesis of Chiral Drug Molecules
hydrogen
disappears, confirming that the peaks were caused
by those groups Each chiral center will have two possible arrangements of
bonds
around it and a different arrangement of bonds
14.10. Describing an NMR Spectra will mean a
differently shaped molecule
Differently shaped molecules won't necessarily fit the
For example: active site
of an enzyme, and hence wouldn’t function
e.g. one enantiomer of a drug used to treat tuberculosis
is
effective while the other can cause blindness
Using pure enantiomers will be beneficial as it:
Reduces patient’s dosage by half as pure enantiomer
is more
potent; better therapeutic activity
Minimizes risk of side effects thereby protecting
To identify the protons present, set up a table as follows patients from
further problems
Reduces cost of production because all that is
No. of Chemical Type of Splitting No. of H on produced can be
used as the drug
H shift proton pattern adj. C Producing pure enantiomers:
3 1.30 -CH3 Doublet 1 Optical resolution: the drug is produced following
traditional synthesis route and then a single
6 3.30 -O-CH3 Singlet 0
enantiomer is
separated physically by adding a
1 4.60 -O-CHR2 Quartet 3 substance that reacts with the
other isomer
Optically active starting material: drug produced from
Final molecule: (CH3O)2CH-CH3 optically active starting material (e.g. carbohydrates or
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Chemistry (9701)