HB-3002-004 R2 HB QIAstat-Dx-ME-Panel CE 0922 ROW
HB-3002-004 R2 HB QIAstat-Dx-ME-Panel CE 0922 ROW
Version 1
For in vitro diagnostic use
691611
R3
Sample to Insight
Contents
Procedure ................................................................................................................ 19
Limitations ................................................................................................................ 41
Clinical performance....................................................................................... 43
References ............................................................................................................... 76
Symbols ................................................................................................................... 77
The following organisms are identified and differentiated using the QIAstat-Dx ME Panel:
Escherichia coli K1, Haemophilus influenzae, Listeria monocytogenes, Neisseria meningitidis
(encapsulated), Streptococcus agalactiae, Streptococcus pneumoniae, Mycoplasma
pneumoniae, Streptococcus pyogenes, Herpes simplex virus 1, Herpes simplex virus 2, Human
herpes virus 6, Enterovirus, Human parechovirus, Varicella-zoster virus and Cryptococcus
neoformans/gattii*.
The QIAstat-Dx ME Panel is indicated as an aid in the diagnosis of specific agents of meningitis
and/or encephalitis and results must be used in conjunction with other clinical,
epidemiological, and laboratory data. Results from the QIAstat-Dx ME Panel are not intended
to be used as the sole basis for diagnosis, treatment, or other patient management decisions.
Positive results do not rule out co-infection with organisms not included in the QIAstat-Dx ME
Panel. The agent or agents detected may not be the definite cause of the disease. Negative
results do not preclude central nervous system (CNS) infection.
Not all agents of CNS infection are detected by this test, and sensitivity in clinical use may
differ from that described in the package insert.
The QIAstat-Dx ME Panel is intended to be used in conjunction with standard of care (e.g.,
culture for organism recovery, serotyping, and antimicrobial susceptibility testing).
The QIAstat-Dx ME Panel is intended for in vitro diagnostic use by laboratory professionals only.
The QIAstat-Dx ME Panel Cartridge is a disposable plastic device that allows performance of
fully automated molecular assays for the detection and identification of nucleic acids from
multiple agents, directly from CSF samples. The main features of the QIAstat-Dx ME Panel
Cartridge include compatibility with a liquid sample type, hermetical containment of the
pre-loaded reagents necessary for testing, and true walk-away operation. All sample preparation
and assay testing steps are performed within the cartridge.
All reagents required for the complete execution of a test run are pre-loaded and self-contained
in the QIAstat-Dx ME Panel Cartridge. The user does not need to come in contact with and/or
manipulate any reagents. During the test, reagents are handled within the cartridge in the
Analytical Module of the QIAstat-Dx Analyzer 1.0 by pneumatically operated microfluidics
and make no direct contact with the actuators. The QIAstat-Dx Analyzer 1.0 houses air filters
for both incoming and outgoing air, further safeguarding the environment. After testing, the
cartridge stays hermetically closed at all times, greatly enhancing its safe disposal.
Within the cartridge, multiple steps are automatically performed in sequence using pneumatic
pressure to transfer samples and fluids via the transfer chamber to their intended destinations.
After the QIAstat-Dx ME Panel Cartridge containing the sample is introduced into the
QIAstat-Dx Analyzer 1.0, the following assay steps occur automatically:
Main port
Swab port
Note: The swab port is not used for the QIAstat-Dx ME Panel assay.
Meningitis and encephalitis are potentially devastating conditions and can be associated with
significant morbidity and mortality.(1) Meningitis is defined as inflammation of the meninges,
encephalitis is defined as inflammation of the brain parenchyma, and meningoencephalitis is
defined as inflammation at both locations. All these conditions can be caused by bacteria,
viruses, or fungi, with encephalitis being more commonly associated with a viral etiology.(2)
Clinical presentations are usually nonspecific; as patients often experience headache, altered
mental status, and, in the case of meningitis, nuchal rigidity. Early diagnosis is vital, as
symptoms can appear suddenly and escalate to brain damage, hearing and/or speech loss,
blindness, or even death. As treatment differs depending on the cause of the disease,
identification of a specific causative agent is necessary to adjust treatment accordingly.
The QIAstat-Dx ME Panel Cartridge allows detection of 15 bacterial, viral, and fungal
pathogenic targets that cause signs and/or symptoms of meningitis and/or encephalitis.
Testing requires a small sample volume and minimal hands-on time, and the results are
available in less than 80 minutes.
Pathogens that can be detected and identified with the QIAstat-Dx ME Panel are listed in Table 1.
Diagnostic tests with the QIAstat-Dx ME Panel are performed on the QIAstat-Dx Analyzer 1.0.
All of the sample preparation and analysis steps are performed automatically by the QIAstat-Dx
Analyzer 1.0. Samples are collected and loaded manually into the QIAstat-Dx ME Panel
Cartridge.
A transfer pipette is used for sample transfer into the main port (Figure 2).
The collection of samples and their subsequent loading into the QIAstat-Dx ME Panel Cartridge
should be performed by personnel trained in safe handling of biological samples.
The following steps are involved and must be executed by the user:
The extraction, amplification, and detection of nucleic acids in the sample are performed
automatically by the QIAstat-Dx Analyzer 1.0.
1. The sample is homogenized, and cells are lysed in the lysis chamber of the QIAstat-Dx
ME Panel Cartridge, which includes a rotor that turns at high speed.
2. Nucleic acids are purified from the lysed sample via binding to a silica membrane in the
purification chamber of the QIAstat-Dx ME Panel Cartridge in the presence of chaotropic
salts and alcohol.
3. The purified nucleic acids are eluted from the membrane in the purification chamber and
are mixed with the lyophilized PCR chemistry in the dried-chemistry chamber of the
QIAstat-Dx ME Panel Cartridge.
4. The mixture of sample and PCR reagents is dispensed into the QIAstat-Dx ME Panel
Cartridge PCR chambers, which contain lyophilized assay-specific primers and probes.
5. The QIAstat-Dx Analyzer 1.0 creates the optimal temperature profiles to carry out
effective multiplex real-time RT-PCR and performs real-time fluorescence measurements to
generate amplification curves.
6. The QIAstat-Dx Analyzer 1.0 Software interprets the resulting data and process controls
and delivers a test report.
Transfer pipettes† 6
* 6 individually packaged cartridges containing all reagents needed for sample preparation and multiplex real-time
RT-PCR, plus Internal Control.
†
6 individually packaged transfer pipettes for dispensing liquid sample into the QIAstat-Dx ME Panel Cartridge.
QIAstat-Dx Analyzer 1.0 (at least one Operational Module and one Analytical Module)
with software version 1.4 or higher
QIAstat-Dx Analyzer 1.0 User Manual (for use with software version 1.4 or higher)
QIAstat-Dx latest Assay Definition File software for the QIAstat-Dx ME Panel installed in the
Operational Module.
Safety information
When working with chemicals, always wear a suitable lab coat, disposable gloves, and
protective goggles. Protect the skin, eyes, and mucus membranes, and change gloves often
when handling samples. For more information, consult the appropriate safety data sheets
(SDSs). These are available online in PDF format at www.qiagen.com/safety where you can
find, view, and print the SDS for each QIAGEN kit and kit component.
Handle all samples, used cartridges, and transfer pipettes as if they are capable of transmitting
infectious agents. Always observe safety precautions as outlined in relevant guidelines, such as the
Clinical and Laboratory Standards Institute® (CLSI) Protection of Laboratory Workers from
Occupationally Acquired Infections; Approved Guideline (M29), or other appropriate documents.
Follow your institution’s safety procedures for handling biological samples. Dispose of samples,
QIAstat-Dx ME Panel Cartridges, and transfer pipettes according to the appropriate regulations.
The QIAstat-Dx ME Panel Cartridge is a closed single-use device that contains all reagents
needed for sample preparation and multiplex real-time RT-PCR within the QIAstat-Dx Analyzer
1.0. Do not use a QIAstat-Dx ME Panel Cartridge if it appears damaged or leaks fluid. Dispose
of used or damaged cartridges in accordance with all national, state, and local health and
safety regulations and laws.
The following hazard and precautionary statements apply to components of the QIAstat-Dx
ME Panel.
To guard against possible contamination of the specimen and work area standard laboratory
safety and cleaning procedures should be used, including the following precautions:
Samples should be processed in a biosafety cabinet or a similar clean surface ensuring the
user’s protection. If a biosafety cabinet is not used, a dead air box (e.g., AirClean PCR
workstation), a splash shield (e.g., Bel-Art Scienceware Splash Shields), or a face shield
should be used when preparing samples.
A biosafety cabinet that is used for performing CSF pathogen testing (e.g. culture) should
not be used for sample preparation or cartridge loading.
Prior to processing samples, thoroughly clean the work area using a suitable cleaner such
as freshly prepared 10% bleach or a similar disinfectant. To avoid residue buildup and
potential damage to the specimen or interference from disinfectants, wipe disinfected
surfaces with water.
Samples and cartridges should be handled one at a time.
Use clean gloves to remove materials from bulk packaging bags and reseal bulk packaging
bags when not in use.
Change gloves and clean the work area between each sample.
Discard used cartridges in an appropriate biohazard container immediately after the run
has been completed.
Avoid excessive handling of cartridges after test runs.
Avoid damaging the cartridge.
Use clean gloves to remove materials from bulk packaging boxes, and close bulk
packaging when not in use.
The QIAstat-Dx ME Panel Cartridge includes a full process Internal Control, which is titered
Schizosaccharomyces pombe, a yeast (fungi) that is included in the cartridge in dried form
and is rehydrated upon sample loading. This Internal Control material verifies all steps of the
analysis process, including sample homogenization, lysis of viral and cellular structures (by
means of chemical and mechanical disruption), nucleic acid purification, reverse transcription,
and real-time PCR.
A positive signal for the Internal Control indicates that all processing steps performed by the
QIAstat-Dx ME Panel Cartridge were successful.
A negative signal of the Internal Control does not negate any positive results for detected and
identified targets, but it does invalidate all negative results in the analysis. Therefore, the test
should be repeated if the Internal Control signal is negative.
The CSF specimen should be collected via lumbar puncture and should not be centrifuged.
1. Thoroughly clean the work area with freshly prepared 10% bleach (or a suitable
disinfectant) followed by a water rinse.
2. Open the package of a QIAstat-Dx ME Panel Cartridge using the tear notches on the sides
of the packaging (Figure 4).
3. Remove the QIAstat-Dx ME Panel Cartridge from the packaging and position it so that the
bar code on the label faces you.
4. Manually write the sample information or place a sample information label on the top of
the QIAstat-Dx ME Panel Cartridge. Make sure that the label is properly positioned and
does not block the lid opening (Figure 5).
5. Open the sample lid of the main port on the front of the QIAstat-Dx ME Panel Cartridge
(Figure 6).
6. Open the tube with the sample to be tested. Use the supplied transfer pipette to draw fluid
up to the second fill line on the pipette (i.e., 200 µL) (Figure 7).
IMPORTANT: Do not draw air into the pipette. If air is drawn into the pipette, carefully
expel the sample fluid in the pipette back into the sample tube and draw up fluid again.
7. Carefully transfer 200 µl of sample into the main port of the QIAstat-Dx ME Panel Cartridge
using the supplied single-use transfer pipette (Figure 8).
9. Visually confirm that the sample has been loaded by checking the sample inspection
window of the QIAstat-Dx ME Panel Cartridge (Figure 10, ).
IMPORTANT: After the sample is placed inside the QIAstat-Dx ME Panel Cartridge, the
cartridge must be loaded into the QIAstat-Dx Analyzer 1.0 within 90 minutes.
1. Power ON the QIAstat-Dx Analyzer 1.0 by pressing the On/Off button on the front of the
instrument.
Note: The power switch on the back of the Analytical Module must be set in the “I”
position. The QIAstat-Dx Analyzer 1.0 status indicators will turn blue.
2. Wait until the Main screen appears and the QIAstat-Dx Analyzer 1.0 status indicators
turn green and stop blinking.
3. Log in to the QIAstat-Dx Analyzer 1.0 by entering the user name and password.
Note: The Login screen will appear if User Access Control is activated. If the User Access Control
is disabled, no user name/password will be required and the Main screen will appear.
4. If the Assay Definition File software has not been installed on the QIAstat-Dx Analyzer
1.0, follow the installation instructions prior to running the test (see Appendix A: Installing
the Assay Definition File, page 72, for additional information).
Running a test
1. Press the Run Test button in the top-right corner of the touchscreen of the QIAstat-Dx
Analyzer 1.0.
2. When prompted, scan the sample ID bar code on the CSF tube containing the sample, or
scan the specimen information barcode located on the top of the QIAstat-Dx ME Panel
Cartridge (see step 3) using the integrated front bar code reader of the QIAstat-Dx
Analyzer 1.0 (Figure 11, ).
Note: It is also possible to enter the sample ID using the virtual keyboard of the touchscreen
by selecting the Sample ID field.
Note: Depending on the chosen system configuration, entering the patient ID may also be
required at this point.
Note: Instructions from the QIAstat-Dx Analyzer 1.0 appear in the Instructions Bar at the
bottom of the touchscreen.
3. When prompted, scan the bar code of the QIAstat-Dx ME Panel Cartridge to be used
(Figure 12, ). The QIAstat-Dx Analyzer 1.0 automatically recognizes the assay to be run
based on the cartridge bar code.
Note: The QIAstat-Dx Analyzer 1.0 will not accept QIAstat-Dx ME Panel Cartridges with
lapsed expiration dates, previously used cartridges, or cartridges for assays that have not
been installed on the unit. An error message will be shown in these cases, and the
QIAstat-Dx ME Panel Cartridge will be rejected. Refer to the QIAstat-Dx Analyzer 1.0 User
Manual for further details on how to install assays.
6. Make sure that both sample lids of the swab port and main port of the QIAstat-Dx ME Panel
Cartridge are firmly closed. When the cartridge entrance port on the top of the QIAstat-Dx
Analyzer 1.0 automatically opens, insert the QIAstat-Dx ME Panel Cartridge with the bar
code facing to the left and the reaction chambers facing down (Figure 14).
Note: There is no need to push the QIAstat-Dx ME Panel Cartridge into the QIAstat-Dx
Analyzer 1.0. Position it correctly into the cartridge entrance port and the QIAstat-Dx
Analyzer 1.0 will automatically move the cartridge into the Analytical Module.
Note: The swab port is not used for the QIAstat-Dx ME Panel assay.
7. Upon detecting the QIAstat-Dx ME Panel Cartridge, the QIAstat-Dx Analyzer 1.0 will
automatically close the lid of the cartridge entrance port and start the test run. No further
action from the operator is required to start the run.
Note: The QIAstat-Dx Analyzer 1.0 will not accept a QIAstat-Dx ME Panel Cartridge other
than the one used and scanned during the test setup. If a cartridge other than the one scanned
is inserted, an error will be generated and the cartridge will be automatically ejected.
Note: Up to this point, it is possible to cancel the test run by pressing the Cancel button in
the bottom right corner of the touchscreen.
Note: Depending on the system configuration, the operator may be required to re-enter
their user password to start the test run.
Note: The lid of the cartridge entrance port will close automatically after 30 seconds if a
QIAstat-Dx ME Panel Cartridge is not positioned in the port. If this occurs, repeat the
procedure starting with step 18.
8. While the test is running, the remaining run time is displayed on the touchscreen.
10. Press Eject on the touchscreen to remove the QIAstat-Dx ME Panel Cartridge and dispose
of it as biohazardous waste in accordance with all national, state, and local health and
safety regulations and laws. The QIAstat-Dx ME Panel Cartridge should be removed when
the cartridge entrance port opens and ejects the cartridge. If the cartridge is not removed
after 30 seconds, it will automatically move back into the QIAstat-Dx Analyzer 1.0, and
the cartridge entrance port lid will close. If this occurs, press Eject to open the lid of the
cartridge entrance port again and then remove the cartridge.
IMPORTANT: Used QIAstat-Dx ME Panel Cartridges must be discarded. It is not possible
to re-use cartridges for tests for which the execution was started but then subsequently
canceled by the operator, or for which an error was detected.
11. After the QIAstat-Dx ME Panel Cartridge has been ejected, the results Summary screen will
appear. To begin the process for running another test, press Run Test.
Note: For further information on the use of the QIAstat-Dx Analyzer 1.0, refer to the
QIAstat-Dx Analyzer 1.0 User Manual.
Viewing results
The QIAstat-Dx Analyzer 1.0 automatically interprets and saves test results. After ejecting the
QIAstat-Dx ME Panel Cartridge, the results Summary screen is automatically displayed (Figure 16).
Figure 16. Results Summary screen example showing Test Data on the left panel and Test Summary in the main panel.
The main part of the screen provides the following lists and uses color-coding and symbols to
indicate the results:
The first list, under the heading Detected, includes all pathogens detected and identified in
the sample, which are preceded by a sign and are colored red.
The second list, under the heading Equivocal is not used. Equivocal results are not applicable
for the QIAstat-Dx ME Panel, therefore, the Equivocal list will always be empty.
Note: Pathogens detected and identified in the sample are shown in both the Detected and
Tested lists.
If the test failed to complete successfully, a message will indicate Failed followed by the specific
Error Code.
The following Test Data is shown on the left side of the screen:
Sample ID
Patient ID (if available)
Assay Type
Sample Type
Further data about the assay is available, depending on the operator’s access rights, through
the tabs at the bottom of the screen (e.g., amplification plots and test details).
A report with the assay data can be exported to an external USB storage device. Insert the
USB storage device into one of the USB ports of the QIAstat-Dx Analyzer 1.0 and press Save
Report in the bottom bar of the screen. This report can be exported later at any time by selecting
the test from the View Result List.
The report can also be sent to the printer by pressing Print Report in the bottom bar of the
screen.
To view test amplification curves of pathogens detected, press the Amplification Curves tab
(Figure 17).
Details about the tested pathogens and controls are shown on the left and the amplification
curves are shown in the center.
Note: If User Access Control is enabled on the QIAstat-Dx Analyzer 1.0, the Amplification
Curves screen is only available for operators with access rights.
Press the PATHOGENS tab on the left side to display the plots corresponding to the tested
pathogens. Press on the pathogen name to select which pathogens are shown in the
amplification plot. It is possible to select single, multiple, or no pathogens. Each pathogen in
the selected list will be assigned a color corresponding to the amplification curve associated
with the pathogen. Unselected pathogens will be shown in gray.
Press the CONTROLS tab on the left side to view the controls in the amplification plot. Press the
circle next to the control name to select or deselect it (Figure 18).
The amplification plot displays the data curve for the selected pathogens or controls. To
alternate between logarithmic or linear scale for the Y-axis, press the Lin or Log button at the
bottom left corner of the plot.
The scale of the X-axis and Y-axis can be adjusted using the blue pickers on each axis.
Press and hold a blue picker and then move it to the desired location on the axis. Move a blue
picker to the axis origin to return to the default values.
Press Test Details in the Tab Menu bar at the bottom of the touchscreen to review the results
in more detail. Scroll down to see the complete report.
The following Test Details are shown in the center of the screen (Figure 19):
User ID
Cartridge SN (serial number)
Cartridge Expiration Date
Module SN (serial number)
Test Status (Completed, Failed or Canceled by operator)
Error Code (if applicable)
Test Start Date and Time
Test Execution Time
Assay Name
Test ID
Test Result:
List of analytes tested in the assay, with CT and endpoint fluorescence in the event of a
positive signal
Internal Control, with CT and endpoint fluorescence
To view results from previous tests that are stored in the results repository, press View Results
on the Main Menu bar (Figure 20).
Note: If User Access Control is enabled on the QIAstat-Dx Analyzer 1.0, the data for which the
user has no access rights will be hidden with asterisks.
Select one or more test results by pressing the gray circle to left of the sample ID. A checkmark
will appear next to selected results. Unselect test results by pressing this checkmark. The entire
list of results can be selected by pressing the checkmark circle in the top row (Figure 21).
Figure 21. Example of selecting Test Results in the View Results screen.
Press anywhere in the test row to view the result for a particular test.
The Result column shows the outcome of each test (Table 2).
Positive At least one pathogen is positive Refer to the Summary Result Screen or
pos
Result Printout for pathogen specific
results.
Positive with warning At least one pathogen is positive, Refer to the Summary Result Screen or
pos*
but the Internal Control failed Result Printout for pathogen specific
results.
Failed fail The test failed because either an Repeat the test using a new cartridge.
error occurred, the test was Accept the results of the repeat testing.
canceled by the user, or no If the error persists, contact QIAGEN
pathogens were detected and the Technical Services for further
internal control failed. instructions.
Successful The test is either positive or Login from a user profile with rights to
Suc
negative, but the user does not view the results.
have the access rights to view the
test results.
Press Save Report to save the report(s) for the selected result(s) in PDF format to an external
USB storage device.
Press Search to search the test results by Sample ID, Assay, and Operator ID. Enter the search
string using the virtual keyboard and press Enter to start the search. Only the records containing
the search text will be displayed in the search results.
If the results list has been filtered, the search will only apply to the filtered list.
For other parameters, such as Assay, a dialog will open with a list of assays stored in the
repository. Select one or more assays to filter only the tests that were performed with the
selected assays.
The symbol to the left of a column headline indicates that the column’s filter is active.
From any tab of the View Results screen, select Save Report to export and save a copy of the
test results in PDF format to a USB drive (Figure 22 to Figure 24). The USB port is located on
the front of the QIAstat-Dx Analyzer 1.0. The interpretation of the results in the PDF file is shown
on Table below.
Invalid No symbol The Internal Control failed there is not valid result for
this target and the sample should be retested
Test Status Completed The test was completed and the Internal Control and/or
one or more targets were detected
Figure 23. Sample test report showing details about the test
Make sure a printer is connected to the QIAstat-Dx Analyzer 1.0 and the proper driver is
installed. Press Print Report to send a copy of the PDF test results to the printer.
Result interpretation
Passed The Internal Control amplified The run was completed with success. All results
successfully are valid and can be reported. Detected
pathogens are reported as positive and
undetected pathogens are reported as negative.
Failed The Internal Control failed Positively detected pathogen(s) are reported, but
all negative results (tested but not detected
pathogen[s]) are invalid.
Repeat the testing using a new QIAstat-Dx
Meningitis/Encephalitis Panel Cartridge.
Limitations
Results from the QIAstat-ME Panel are not intended to be used as the sole basis for
diagnosis, treatment, or other patient management decisions.
Positive results do not rule out co-infection with organisms not included in the QIAstat-Dx ME
Panel. The agent or agents detected may not be the definite cause of the disease. Negative
results do not preclude central nervous system (CNS) infection, as not all potential etiological
agents are detected by this assay, and pathogens targeted by the QIAstat-Dx ME Panel may
be present in lower concentrations below the limits of detection of the system
Not all agents of CNS infection are detected by this test, and sensitivity in clinical use may
differ from that described in the package insert.
The QIAstat-Dx ME Panel is not intended for testing of specimens collected from
indwelling CNS medical devices.
A negative result with the ME Panel does not exclude the infectious nature of the
syndrome. Negative assay results may originate from several factors and their
combinations, including sample handling mistakes, variation in the nucleic acid
sequences targeted by the assay, infection by organisms not included in the assay,
organism levels of included organisms that are below the limit of detection for the assay
and use of certain medications, therapies, or agents.
The QIAstat-Dx ME Panel is not intended for testing of samples other than those described in
this Instructions for Use. Test performance characteristics have been established only with CSF.
The QIAstat-Dx ME Panel is intended to be used in conjunction with standard of care (e.g.,
culture for organism recovery, serotyping, and antimicrobial susceptibility testing). The results
from the QIAstat-Dx ME Panel must be interpreted by a trained healthcare professional within
the context of all relevant clinical, laboratory, and epidemiological findings.
*
DiagCORE Analyzer instruments running QIAstat-Dx software version 1.4 or higher can be used as an alternative to
the QIAstat-Dx Analyzer 1.0.
Germany 200
France 194
Denmark 191
Overall/Total 585
Variable Subgroup N %
N.S. 15 2.60
N.S. 15 2.60
Out of the 585 eligible clinical specimens, 579 produced an evaluable result. Contrived
samples (n=367) were included to assess performance of pathogens with low prevalence
(Neisseria meningitidis, Streptococcus agalactiae, Enterovirus, Herpes Virus Simplex 1, and
Human Parechovirus) and for Mycoplasma pneumoniae and Streptococcus pyogenes. For
each pathogen that was contrived, the chosen strains were spiked into negative clinical matrix
in at least 10 different samples or pools of negative CSF. Once prepared, the contrived
samples were randomized and blinded then sent to each of the clinical sites for testing within
the standard workflow. Table 7 shows the samples included in the performance calculation.
Variable Subgroup N %
Enterovirus 60 6.34
Positive percent agreement (PPA) was calculated as 100% x (TP/(TP+FN)). True positive (TP)
indicates that both the QIAstat-Dx ME Panel and reference/comparator method had a positive
result for the specific analyte, and false negative (FN) indicates that the QIAstat-Dx result was
negative while the comparator result was positive. Negative percent agreement (NPA) was
calculated as 100% x (TN/(TN+FP)). True negative (TN) indicates that both QIAstat-Dx ME Panel
and the reference/comparator method had negative results, and a false positive (FP) indicates
Table 8. Clinical Performance acceptance criteria assessment for sensitivity and specificity – after discordant resolution
to SoC Test
PPA NPA
Bacteria Escherichia coli Clinical 1/1 100.00% 20.65%- 579/579 100.00% 99.34%-
K1 100.00% 100.00%
PPA NPA
There were eleven (11) cartridges (out of 596 cartridge runs) that failed to provide a valid result,
yielding a 98.16% success rate on cartridge run.
Conclusion
The Analytical Sensitivity or Limit of Detection (LoD) is defined as the lowest concentration at
which ≥95% of samples tested generates a positive call.
The LoD for each QIAstat-Dx Meningitis/Encephalitis Panel pathogen was assessed by
analyzing dilutions of analytical samples prepared from stocks obtained from commercial
suppliers (ZeptoMetrix® and ATCC®).
The LoD concentration was determined for a total of 40 pathogen strains. The LoD of the
QIAstat-Dx Meningitis/Encephalitis Panel was determined per analyte using selected strains
representing individual pathogens that are possible to detect with the QIAstat-Dx
Meningitis/Encephalitis Panel. All sample dilutions were prepared using negative clinical CSF.
To confirm the established LoD concentration, the required detection rate of all replicates was
≥95% .
At least 4 different cartridge lots and at least 3 different QIAstat-Dx Analyzers were used for
LoD determination for every pathogen.
Individual LoD values for each QIAstat-Dx ME Panel target is shown in Table 9.
Cryptococcus gattii Serotype B strain R272, type VGIIb ATCC CFU/ml 1.32E+04
The inclusivity (analytical reactivity) Study extended the list of pathogen strains tested during
the QIAstat-Dx Meningitis/Encephalitis Limit of Detection (LoD) Study to confirm the reactivity
of the detection system in the presence of different strains of the same organisms at a
concentration near the respective Limit of Detection.
A variety of clinically relevant strains of each target organism of the QIAstat-Dx ME Panel
(Inclusivity Strains) representing organism sub-types, strains, and serotypes of different
temporal and geographic diversity of each analyte were included in the study. Analytical
Reactivity (Inclusivity) was performed in two steps:
NCDC Bi 7509-41
ATCC
Serotype O7:K1(L):NM
L-378 ATCC
Type 4b ZeptoMetrix
Gibson ATCC
EGDe ATCC
PI 1428 ATCC
M129 ZeptoMetrix
UTMB-10P ATCC
MAC ATCC
W135 ATCC
MC58 ATCC
Z019 ZeptoMetrix
Z023 ZeptoMetrix
19F ZeptoMetrix
A2 Fl [Fleetwood] ATCC
A7 - 275/58 ATCC
Coxsackievirus B5 ZeptoMetrix
Coxsackievirus B4 ZeptoMetrix
Enterovirus B
Echovirus 6 ZeptoMetrix
Echovirus 9 ZeptoMetrix
Coxsackievirus B3 ZeptoMetrix
Echovirus 18 NCPV
ATCC VR-260 HF
ATCC VR-733 F
NCTC 1806147v P6
G ATCC
ATCC-2011-2 ATCC
131596 NCPV
HG52 NCPV
Herpes simplex virus 2
Isolate 1 ZeptoMetrix
Isolate 11 Zeptometrix
Isolate 15 Zeptometrix
Isolate 20 Zeptometrix
6B - strain SF ATCC
Human herpes virus 6 6B - strain HST NCPV
Human β-lymphotropic
ATCC
virus strain GS
Serotype 3 ZeptoMetrix
Serotype 2. Strain
ZeptoMetrix
Williamson
Serotype 4 ZeptoMetrix
Human parechovirus Serotype 5 ZeptoMetrix
Serotype 6 ZeptoMetrix
Ellen ZeptoMetrix
Oka ATCC
Isolate A ZeptoMetrix
Isolate B ZeptoMetrix
Pathogen Strain/Serotype
Exclusivity
The analytical specificity study was carried out by in vitro testing and in silico analysis to assess
the potential cross-reactivity and exclusivity of the QIAstat-Dx ME Panel. On-panel organisms
were tested to assess the potential for intra-panel cross-reactivity and Off-panel organisms were
tested to evaluate cross-reactivity with organisms not covered by the panel content.
The result of the in silico analysis performed for all primer/probe designs included in the
QIAstat-Dx Meningitis Encephalitis Panel pointed at 6 potential cross-reactions with off-panel
targets (listed on Table 13)
Samples were prepared by spiking potential cross-reactive organisms into artificial CSF matrix
at 105 TCID50/ml for viral targets and 106 CFU/ml for bacterial and fungal targets, or the
highest concentration possible based on the organism stock.
All strains tested for exclusivity are detailed on Table 14. For pathogens marked with * either
quantitative synthetic DNA or inactivated material was used.
Cronobacter (Enterobacter)
CDC 4562-70 ATCC 29544
sakazakii
Haemophilus
536 [NCTC 8479] ATCC 10014
parahaemolyticus
NCTC 9633
Klebsiella pneumoniae ATCC 13883
[NCDC 298-53, NCDC 410-68]
Streptococcus
CDC-SS-1757 ATCC BAA-960
pseudopneumoniae
All tested organisms/viruses showed negative results in all three replicates tested (no
unexpected positive signals detected), except for the pathogens shown in the table below.
Pathogens exhibiting cross-reactivity with the panel, and the lowest concentration where cross
reactivity is detected are listed in Table 15.
* Propionibacterium acnes was not predicted to cross-react with the Mycoplasma pneumoniae.
†
The in silico predicted cross-reactivity for Listeria innocua with the Listeria monocytogenes assay and Cryptococcus
depauperatus with Cryptococcus neoformans/gattii assay were not confirmed in vitro
Combined samples containing a mixture of two different targets spiked at low and high
concentrations into artificial CSF were tested. Bacterial, viral and yeast targets were included,
and organisms detected in the same reaction chamber were chosen for sample preparation
and testing. Selection and combinations of targets tested was based on clinical relevance.
Three replicates were tested per sample.
A summary of the final co-infection mixes whereby the High Percentage Analyte (HPA) does
not inhibit the Low Percentage Analyte (LPA) is shown in Table 16.
Table 16. Co-infection Mixes where concentration of the HPA does not inhibit the LPA
LPA HPA*
Haemophilus CFU/ml
9.48E+02 CFU/ml Escherichia coli K1 1.00E+06
influenzae
Mycoplasma TCID50/ml
2.84E+02 CFU/ml HSV1 1.00E+05
pneumoniae
Mycoplasma CFU/ml
HSV1 2.67E+02 TCID50/ml 1.00E+03
pneumoniae
Haemophilus TCID50/ml
9.48E+02 CFU/ml HSV2 1.00E+02
influenzae
Listeria cp/ml
5.58E+03 CFU/ml HHV6 1.00E+05
monocytogenes
Streptococcus CFU/ml
HSV1† 2.67E+02 TCID50/ml 1.00E+02
pneumoniae
LPA HPA*
Streptococcus
6.78E+02 CFU/ml HSV1 1.00E+05 TCID50/ml
pneumoniae
Haemophilus Streptococcus
9.48E+02 CFU/ml 1.00E+06 CFU/ml
influenzae pneumoniae
Streptococcus Haemophilus
6.78E+02 CFU/ml 1.00E+06 CFU/ml
pneumoniae influenzae
Listeria Streptococcus
5.58E+03 CFU/ml 1.00E+06 CFU/ml
monocytogenes pneumoniae
Streptococcus Listeria
6.78E+02 CFU/ml 1.00E+06 CFU/ml
pneumoniae monocytogenes
Cryptococcus Streptococcus
6.63E+03 CFU/ml 1.00E+06 CFU/ml
neoformans pneumoniae
Streptococcus Cryptococcus
6.78E+02 CFU/ml 1.00E+05 CFU/ml
pneumoniae neoformans
Neisseria Haemophilus
3.99E+01 CFU/ml 1.00E+06 CFU/ml
meningitidis influenzae
Haemophilus Neisseria
9.48E+02 CFU/ml 1.00E+06 CFU/ml
influenzae meningitidis
Neisseria
VZV 1.62E+02 CFU/ml 1.00E+06 CFU/ml
meningitidis
Neisseria
3.99E+01 CFU/ml VZV 1.00E+05 CFU/ml
meningitidis
Streptococcus
Enterovirus 4.80E+02 TCID50/ml 1.00E+06 CFU/ml
pyogenes
Streptococcus
1.71E+03 CFU/ml Enterovirus 1.00E+05 TCID50/ml
pyogenes
Parechovirus 1.01E+02 CFU/ml Enterovirus 1.00E+05 TCID50/ml
The effect of potentially interfering substances on the detectability of the QIAstat-Dx ME Panel
organisms was evaluated. The substances tested in the study (31) included endogenous as well
as exogenous substances that are commonly found and/or introduced into CSF specimens
during specimen collection.
All QIAstat-Dx ME Panel target organisms were tested at 3x LoD in artificial CSF matrix and testing
was performed in triplicates. Potential interfering substances were spiked into the samples at a level
predicted to be above the concentration of the substance likely to be found in CSF sample.
Endogenous substances
gDNA 2 µg/ml No
D(+)Glucose 10 mg/ml No
Exogenous substances
Ethanol 7% (v/v) No
Acyclovir 69 µg/ml No
Ganciclovir 25 µg/ml No
Gentamicin 30 µg/ml No
Voriconazole 11 µg/ml No
Non-target microorganisms
Note: Any solvents or buffers used in the preparation of interfering substances were also tested for possible
interference, none was found.
All potentially interfering endogenous and exogenous substances have been evaluated and have
been confirmed not to interfere with any of the panel target assays at concentrations potentially
found in clinical samples. This is except for Bleach and gDNA, where interference was observed
and as such the lowest concentration of the substance causing interference has been determined.
For the reproducibility assessment, a multi-site scheme was followed by testing both negative
and positive samples at two different study sites with varying workflow variables, such as sites,
days, instruments, operators and cartridge lots that could have an impact on the precision of
the system. Negative samples consisted of artificial CSF. Positive combined samples consisted
of artificial CSF spiked with a representative panel of pathogens covering all types targeted
by the QIAstat-Dx ME Panel (i.e. DNA virus, RNA virus, gram (+) bacteria, gram (-) bacteria
and yeast) at the limit of detection (1x LoD) and at 3x LoD. For each site, testing was performed
across 5 non-consecutive days per mix with 9 replicates per day per mix (leading to a total of
45 replicates per target, concentration, and site), a minimum of 9 different QIAstat-Dx
Analyzers per site, and at least 3 operators on each testing day.
Reproducibility testing was designed to evaluate the critical variables that may impact the
performance of the QIAstat-Dx ME Panel in the context of its routine and intended use.
For the repeatability study, the same sample panel was tested following a single-site scheme.
Repeatability testing was designed to evaluate the precision of a QIAstat-Dx ME Panel
cartridge under similar (intra laboratory) conditions. Repeatability study was assessed with
the same samples used for Reproducibility testing using Site 1.
Note: Whenever a new version of the QIAstat-Dx ME Panel assay is released, the new
QIAstat-Dx ME Panel Assay Definition File must be installed prior to testing.
Note: Assay Definition Files are available at www.qiagen.com. The Assay Definition File
(.asy file type) must be saved onto a USB Drive prior to installation on the QIAstat-Dx
Analyzer 1.0. This USB Drive must be formatted with a FAT32 file system.
To import assays to the QIAstat-Dx Analyzer 1.0, proceed with the following steps:
12. Insert the USB storage device containing the Assay Definition File into one of the USB
ports on the QIAstat-Dx Analyzer 1.0.
13. Press the Options button and then select Assay Management. The Assay Management
screen appears in the Content area of the display (Figure 25).
14. Press the Import icon in the bottom left of the screen.
19. Assign the active assay to the user by pressing the Options button and then the User
Management button. Select the user who should be allowed to run the assay. Next, select
Assign Assays from the User Options. Enable the assay and press the Save button (Figure 27).
Analytical Module (AM): The main QIAstat-Dx Analyzer 1.0 hardware module, in charge of
executing tests on QIAstat-Dx Meningitis/Encephalitis Panel Cartridges. It is controlled by the
Operational Module. Several Analytical Modules can be connected to one Operational
Module.
QIAstat-Dx Analyzer 1.0: The QIAstat-Dx Analyzer 1.0 consists of an Operational Module
and an Analytical Module. The Operational Module includes elements that provide
connectivity to the Analytical Module and enables user interaction with the QIAstat-Dx
Analyzer 1.0. The Analytical Module contains the hardware and software for sample testing
and analysis.
QIAstat-Dx ME Panel Cartridge: A self-contained disposable plastic device with all pre-loaded
reagents required for the complete execution of fully automated molecular assays for the
detection of meningitis/encephalitis pathogens.
Main port: In the QIAstat-Dx ME Panel Cartridge, inlet for transport medium liquid samples.
Operational Module (OM): The dedicated QIAstat-Dx Analyzer 1.0 hardware that provides the
user interface for 1–4 Analytical Modules (AM).
User: A person who operates the QIAstat-Dx Analyzer 1.0/QIAstat-Dx ME Panel Cartridge in
the intended way.
2. Meningitis. https://www.cdc.gov/meningitis/index.html
Use by
Catalog number
Lot number
Temperature limitation
Manufacturer
Caution
Serial number
Do not reuse
Risk of harm
Date Changes
Trademarks: QIAGEN®, Sample to Insight®, QIAstat-Dx®, DiagCORE® (QIAGEN Group); AirClean (AirClean Systems, Inc.); Bel-Art Scienceware® (Bel-Art Products); Clinical and Lab
(Clinical Laboratory and Standards Institute, Inc.). Registered names, trademarks, etc., used in this document, even when not specifically marked as such, are not to be considered un
HB-3002-004 R3 09/2022 © 2022 QIAGEN, all rights reserved.
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HB-3002-004 09/2022 QIAstat-Dx ME Panel Instructions for Use (Handbook) 09/2022